Update GraphQL schema for STRs to reflect new ES schema

Author: phildarnowsky-broad

graphql-api/src/graphql/types/short-tandem-repeat.graphql

@@ -31,52 +31,48 @@ type ShortTandemRepeatRepeatUnit {
   classification: String!
 }
 
-type ShortTandemRepeatAlleleSizeDistributionPopulation {
-  id: String!
-  distribution: [[Int!]!]!
-}
-
-type ShortTandemRepeatAlleleSizeDistributionRepeatUnit {
-  repeat_unit: String!
-  distribution: [[Int!]!]!
-  populations: [ShortTandemRepeatAlleleSizeDistributionPopulation!]!
-}
-
-type ShortTandemRepeatAlleleSizeDistribution {
+type ShortTandemRepeatAgeDistributionBin {
+  age_range: [Int]!
   distribution: [[Int!]!]!
-  populations: [ShortTandemRepeatAlleleSizeDistributionPopulation!]!
-  repeat_units: [ShortTandemRepeatAlleleSizeDistributionRepeatUnit!]!
 }
 
-type ShortTandemRepeatGenotypeDistributionPopulation {
-  id: String!
-  distribution: [[Int!]!]!
+type ShortTandemRepeatAlleleSizeItem {
+  repunit_count: Int!
+  frequency: Int!
 }
 
-type ShortTandemRepeatGenotypeDistributionRepeatUnit {
-  repeat_units: [String!]!
-  distribution: [[Int!]!]!
-  populations: [ShortTandemRepeatGenotypeDistributionPopulation!]!
+type ShortTandemRepeatAlleleSizeDistributionCohort {
+  ancestry_group: String!
+  sex: String!
+  repunit: String!
+  quality_description: String!
+  q_score: Float!
+  distribution: [ShortTandemRepeatAlleleSizeItem!]!
 }
 
-type ShortTandemRepeatGenotypeDistribution {
-  distribution: [[Int!]!]!
-  populations: [ShortTandemRepeatGenotypeDistributionPopulation!]!
-  repeat_units: [ShortTandemRepeatGenotypeDistributionRepeatUnit!]!
+type ShortTandemRepeatGenotypeItem {
+  short_allele_repunit_count: Int!
+  long_allele_repunit_count: Int!
+  frequency: Int!
 }
 
-type ShortTandemRepeatAgeDistributionBin {
-  age_range: [Int]!
-  distribution: [[Int!]!]!
+type ShortTandemRepeatGenotypeDistributionCohort {
+  ancestry_group: String!
+  sex: String!
+  short_allele_repunit: String!
+  long_allele_repunit: String!
+  quality_description: String!
+  q_score: Float!
+  distribution: [ShortTandemRepeatGenotypeItem!]!
 }
 
 type ShortTandemRepeatAdjacentRepeat {
   id: String!
   reference_region: ShortTandemRepeatReferenceRegion!
   reference_repeat_unit: String!
   repeat_units: [String!]!
-  allele_size_distribution: ShortTandemRepeatAlleleSizeDistribution!
-  genotype_distribution: ShortTandemRepeatGenotypeDistribution!
+  allele_size_distribution: [ShortTandemRepeatAlleleSizeDistributionCohort!]!
+  genotype_distribution: [ShortTandemRepeatGenotypeDistributionCohort!]!
   age_distribution: [ShortTandemRepeatAgeDistributionBin!]
 }
 
@@ -85,7 +81,8 @@ type ShortTandemRepeat {
   gene: ShortTandemRepeatGene!
   associated_diseases: [ShortTandemRepeatAssociatedDisease!]!
   stripy_id: String!
-  reference_region: ShortTandemRepeatReferenceRegion!
+  main_reference_region: ShortTandemRepeatReferenceRegion!
+  reference_regions: [ShortTandemRepeatReferenceRegion!]!
   reference_repeat_unit: String!
 }
 
@@ -94,11 +91,12 @@ type ShortTandemRepeatDetails {
   gene: ShortTandemRepeatGene!
   associated_diseases: [ShortTandemRepeatAssociatedDisease!]!
   stripy_id: String
-  reference_region: ShortTandemRepeatReferenceRegion!
+  main_reference_region: ShortTandemRepeatReferenceRegion!
+  reference_regions: [ShortTandemRepeatReferenceRegion!]!
   reference_repeat_unit: String!
   repeat_units: [ShortTandemRepeatRepeatUnit!]!
-  allele_size_distribution: ShortTandemRepeatAlleleSizeDistribution!
-  genotype_distribution: ShortTandemRepeatGenotypeDistribution!
+  allele_size_distribution: [ShortTandemRepeatAlleleSizeDistributionCohort!]!
+  genotype_distribution: [ShortTandemRepeatGenotypeDistributionCohort!]!
   age_distribution: [ShortTandemRepeatAgeDistributionBin!]
   adjacent_repeats: [ShortTandemRepeatAdjacentRepeat!]!
 }