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Example Index

This page mirrors the MATLAB Examples help index and points to the canonical Python notebook or script equivalent for each workflow.

Paper cross-reference:

Class and Object Workflows

  • SignalObjExamples: notebooks/SignalObjExamples.ipynb
  • CovariateExamples: notebooks/CovariateExamples.ipynb
  • CovCollExamples: notebooks/CovCollExamples.ipynb
  • nSpikeTrainExamples: notebooks/nSpikeTrainExamples.ipynb
  • nstCollExamples: notebooks/nstCollExamples.ipynb
  • EventsExamples: notebooks/EventsExamples.ipynb
  • HistoryExamples: notebooks/HistoryExamples.ipynb
  • TrialExamples: notebooks/TrialExamples.ipynb
  • TrialConfigExamples: notebooks/TrialConfigExamples.ipynb
  • ConfigCollExamples: notebooks/ConfigCollExamples.ipynb
  • ConfidenceIntervalOverview: notebooks/ConfidenceIntervalOverview.ipynb

Fitting, Assessment, and Analysis

  • AnalysisExamples: notebooks/AnalysisExamples.ipynb
  • AnalysisExamples2: notebooks/AnalysisExamples2.ipynb
  • FitResultExamples: notebooks/FitResultExamples.ipynb
  • FitResultReference: notebooks/FitResultReference.ipynb
  • FitResSummaryExamples: notebooks/FitResSummaryExamples.ipynb

Simulation and Example-Data Analyses

  • PPThinning: notebooks/PPThinning.ipynb
  • PPSimExample: notebooks/PPSimExample.ipynb
  • PSTHEstimation: notebooks/PSTHEstimation.ipynb
  • ValidationDataSet: notebooks/ValidationDataSet.ipynb
  • mEPSCAnalysis: notebooks/mEPSCAnalysis.ipynb
  • ExplicitStimulusWhiskerData: notebooks/ExplicitStimulusWhiskerData.ipynb
  • HippocampalPlaceCellExample: notebooks/HippocampalPlaceCellExample.ipynb

Decoding and Network Workflows

  • DecodingExample: notebooks/DecodingExample.ipynb
  • DecodingExampleWithHist: notebooks/DecodingExampleWithHist.ipynb
  • StimulusDecode2D: notebooks/StimulusDecode2D.ipynb
  • HybridFilterExample: notebooks/HybridFilterExample.ipynb
  • NetworkTutorial: notebooks/NetworkTutorial.ipynb

Consolidated Paper Workflow

All five paper examples are self-contained scripts mirroring their MATLAB counterparts:

Example Script What it demonstrates
01 — mEPSC Poisson example01_mepsc_poisson.py Constant vs piecewise Poisson under Mg2+ washout
02 — Whisker Stimulus example02_whisker_stimulus_thalamus.py Explicit-stimulus GLM with lag and history selection
03 — PSTH and SSGLM example03_psth_and_ssglm.py PSTH comparison and state-space GLM dynamics
04 — Place Cells example04_place_cells_continuous_stimulus.py Gaussian vs Zernike receptive-field models
05 — PPAF and PPHF example05_decoding_ppaf_pphf.py Adaptive and hybrid point-process decoding
  • Generated gallery and figure index: Paper Examples
  • Master notebook: notebooks/nSTATPaperExamples.ipynb

Supplementary (README) Examples

These smaller demos serve as quick install and plotting checks:

Example Run command
Multitaper spectrum + spectrogram python examples/readme_examples/example1_multitaper_and_spectrogram.py
Simulated CIF spike train python examples/readme_examples/example2_simulate_cif_spiketrain_10s.py
Spike-train raster python examples/readme_examples/example3_nstcoll_raster_from_example2.py