I fixed 2 issues

[flyant2]

ISSUES1:
File "/home/biox/stu10/bio-app/WGSassembly/MIX/bin/Mix.py", line 781, in lower_duplication
for (n,d_in),(n,d_out) in zip(D.in_degree_iter(),D.out_degree_iter()):
AttributeError: 'DiGraph' object has no attribute 'in_degree_iter'

FIX:
$ vi /home/biox/stu10/bio-app/WGSassembly/MIX/bin/Mix.py
change "in_degree_iter" to "in_degree" and "out_degree_iter" to "out_degree" .

ISSUES2: about nucmer
origin:
nucmer --maxmatch -c 30 -l 30 -banded -prefix=alignments contigs.fa contigs.fa

my code:
nucmer (4.0.0beta2)
nucmer --maxmatch --threads 10 -c 30 -l 30 -b 200 --prefix=alignments contigs1.fasta contigs2.fasta