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Gene.java
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124 lines (111 loc) · 5.21 KB
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import java.util.ArrayList;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.JsonProperty;
import com.fasterxml.jackson.annotation.JsonPropertyDescription;
import com.fasterxml.jackson.annotation.JsonPropertyOrder;
import org.apache.commons.lang.builder.EqualsBuilder;
import org.apache.commons.lang.builder.HashCodeBuilder;
import org.apache.commons.lang.builder.ToStringBuilder;
/**
* Gene
* <p>
*
*
*/
@JsonInclude(JsonInclude.Include.NON_NULL)
@JsonPropertyOrder({
"gene_associated_with_condition",
"genetically_interacts_with",
"has_gene_product"
})
public class Gene {
/**
* holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with
*
*/
@JsonProperty("gene_associated_with_condition")
@JsonPropertyDescription("holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with")
private List<String> geneAssociatedWithCondition = new ArrayList<String>();
/**
* holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality.
*
*/
@JsonProperty("genetically_interacts_with")
@JsonPropertyDescription("holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality.")
private List<String> geneticallyInteractsWith = new ArrayList<String>();
/**
* holds between a gene and a transcribed and/or translated product generated from it
*
*/
@JsonProperty("has_gene_product")
@JsonPropertyDescription("holds between a gene and a transcribed and/or translated product generated from it")
private List<String> hasGeneProduct = new ArrayList<String>();
/**
* holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with
*
*/
@JsonProperty("gene_associated_with_condition")
public List<String> getGeneAssociatedWithCondition() {
return geneAssociatedWithCondition;
}
/**
* holds between a gene and a disease or phenotypic feature that the gene or its alleles/products may influence, contribute to, or correlate with
*
*/
@JsonProperty("gene_associated_with_condition")
public void setGeneAssociatedWithCondition(List<String> geneAssociatedWithCondition) {
this.geneAssociatedWithCondition = geneAssociatedWithCondition;
}
/**
* holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality.
*
*/
@JsonProperty("genetically_interacts_with")
public List<String> getGeneticallyInteractsWith() {
return geneticallyInteractsWith;
}
/**
* holds between two genes whose phenotypic effects are dependent on each other in some way - such that their combined phenotypic effects are the result of some interaction between the activity of their gene products. Examples include epistasis and synthetic lethality.
*
*/
@JsonProperty("genetically_interacts_with")
public void setGeneticallyInteractsWith(List<String> geneticallyInteractsWith) {
this.geneticallyInteractsWith = geneticallyInteractsWith;
}
/**
* holds between a gene and a transcribed and/or translated product generated from it
*
*/
@JsonProperty("has_gene_product")
public List<String> getHasGeneProduct() {
return hasGeneProduct;
}
/**
* holds between a gene and a transcribed and/or translated product generated from it
*
*/
@JsonProperty("has_gene_product")
public void setHasGeneProduct(List<String> hasGeneProduct) {
this.hasGeneProduct = hasGeneProduct;
}
@Override
public String toString() {
return new ToStringBuilder(this).append("geneAssociatedWithCondition", geneAssociatedWithCondition).append("geneticallyInteractsWith", geneticallyInteractsWith).append("hasGeneProduct", hasGeneProduct).toString();
}
@Override
public int hashCode() {
return new HashCodeBuilder().append(hasGeneProduct).append(geneAssociatedWithCondition).append(geneticallyInteractsWith).toHashCode();
}
@Override
public boolean equals(Object other) {
if (other == this) {
return true;
}
if ((other instanceof Gene) == false) {
return false;
}
Gene rhs = ((Gene) other);
return new EqualsBuilder().append(hasGeneProduct, rhs.hasGeneProduct).append(geneAssociatedWithCondition, rhs.geneAssociatedWithCondition).append(geneticallyInteractsWith, rhs.geneticallyInteractsWith).isEquals();
}
}