Skip to content

Argument list too long #15

@gpcr

Description

@gpcr

Is there a limit on the number of infofields to print?

I was trying to print all the dbnsfp annotated info fields: getting below error

Traceback (most recent call last):
  File "/usr/local/bin/vawk", line 274, in <module>
    sys.exit(main())
  File "/usr/local/bin/vawk", line 269, in main
    vawk(args.debug, args.header, args.var, args.info_col, args.cmd, args.vcf)
  File "/usr/local/bin/vawk", line 254, in vawk
    p = Popen(cmd, stdout=PIPE, stderr=STDOUT)
  File "/usr/lib64/python2.7/subprocess.py", line 711, in __init__
    errread, errwrite)
  File "/usr/lib64/python2.7/subprocess.py", line 1327, in _execute_child
    raise child_exception
OSError: [Errno 7] Argument list too long

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions