deploy_docs.yml

name: Deploy Documentation

on:
  push:
    branches:
      - main

jobs:
  build:
    runs-on: ubuntu-latest

    steps:
    - name: Checkout repository
      uses: actions/checkout@v2

    - name: Setup R
      uses: r-lib/actions/setup-r@v2

    - name: Install rmarkdown
      run: Rscript -e 'install.packages("rmarkdown")'

    - name: Install remotes
      run: Rscript -e 'if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")' 

    - name: Install plotcli
      env:
        GITHUB_PAT: ${{ secrets.GH_PAGES_PAT }}
      run: Rscript -e 'Sys.setenv(GITHUB_PAT = Sys.getenv("GITHUB_PAT")); remotes::install_github("cheuerde/plotcli", upgrade = "never")'
  


    - name: Install pandoc
      run: sudo apt update && sudo apt install -y pandoc

    - name: Render RMarkdown to HTML
      run: Rscript -e 'rmarkdown::render("plotcli_docs.Rmd", output_file = "index.html")'

    - name: Deploy to GitHub Pages
      uses: peaceiris/actions-gh-pages@v3
      with:
        github_token: ${{ secrets.GH_PAGES_PAT }}
        publish_dir: ./
        publish_branch: gh-pages