Hello,
My input file is the result of minigraph , the ekg recommend https://github.com/vgteam/vg/issues/3129#issuecomment-746383277 your gfautil to convert the format, but when I run the command gfautil -i ./pangenome.gfa id-convert --namemap ./ > pangenome.convertID.gfa, get this error:
thread 'main' panicked at 'GFA must contain at least two paths', src/commands/gfa2vcf.rs:92:13
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
if here could not provide the P line in GFA file (minigraph outfile is NULL), how we should convert the format?
Best wishes~
Hello,
My input file is the result of
minigraph, the ekg recommend https://github.com/vgteam/vg/issues/3129#issuecomment-746383277 yourgfautilto convert the format, but when I run the commandgfautil -i ./pangenome.gfa id-convert --namemap ./ > pangenome.convertID.gfa, get this error:if here could not provide the
Pline in GFA file (minigraph outfile is NULL), how we should convert the format?Best wishes~