SNPs and MNPs are poorly classified

[Flavia95]

Hi Chris,
I use rs-gfa-utils on a pangenome of mouse.

I see inconsistencies on the VCF file (flaviav@penguin2:/home/flaviav/data/out_18/chr18.pan+ref.fa.pggb-E-s10000-l50000-p98.5-n6-a0-K16.vcf.gz)

SNPs and MNPs are poorly classified.

REF#chr18       3119250 .       G       G       .       .       TYPE=snv
REF#chr18       3119237 .       GTTGGGCCCTGG    G       .       .   TYPE=mnp