-
Notifications
You must be signed in to change notification settings - Fork 45
Open
Description
Hi , can I get help with this error please? Thank you!
frac_table
[,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8]
[1,] 1 0.5254 0.3832 0.2525 0.1818 0.0909 0.0707 0.0303
parents
[1] 0 1 1 1 1 1 1 1
fish <- createFishObject(frac_table, parents=parents)
Error in frac.table[neighbors, timept] : subscript out of bounds
using data from pyclone output
cluster_summary <- pyclone %>%
group_by(cluster_id) %>%
summarise(mean_prev = mean(cellular_prevalence)) %>%
arrange(desc(mean_prev)) # sort largest clone first
Fractions matrix (1 row = 1 sample, columns = clusters)
frac_table <- matrix(cluster_summary$mean_prev, nrow=1)
parents <- c(0,1,1,1,1,1,1,1)
Metadata
Metadata
Assignees
Labels
No labels