genetic_algorithm.xml

<?xml version="1.0"?>
<tool id="fit_model_with_GA" name="Fit Prediction Model using Genetic Algorithm">
  <description></description>
  
  <inputs>
    <param name="pssm" format="txt" type="data" label="PSSM Data" />
    <param name="answer" format="txt" type="data" label="ANSWER Data" />
    <param name="method" type="select" label="Machine Learning Method">
        <option value="SVM">Support Vector Machine</option>
        <option value="neuralNetwork">Neural Network</option>
        <option value="randomForest">Random Forest</option>
    </param>
  </inputs>

  <outputs>
    <data format="txt" name="parameter" />
    <!--<data format="txt" name="ga_log" />-->
    <!--<data format="txt" name="raw_log" />-->
  </outputs>

  <command interpreter="python">genetic_algorithm.py -m '$method' -b '$answer' -p '$pssm' -l '/tmp/${method}_raw_log.txt' -o '$parameter' > 'tmp/${method}_ga.log'</command>

  <help>
  </help>
</tool>