From 36f77db755c1cb507ee8b736acdbe6fd477be8b5 Mon Sep 17 00:00:00 2001
From: clemsgrs <clementnet@outlook.com>
Date: Wed, 10 Dec 2025 10:40:10 +0000
Subject: [PATCH 1/3] Bump version to 1.0.0

---
 hs2p/__init__.py | 2 +-
 pyproject.toml   | 2 +-
 setup.cfg        | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/hs2p/__init__.py b/hs2p/__init__.py
index 6c8e6b9..5becc17 100644
--- a/hs2p/__init__.py
+++ b/hs2p/__init__.py
@@ -1 +1 @@
-__version__ = "0.0.0"
+__version__ = "1.0.0"
diff --git a/pyproject.toml b/pyproject.toml
index faae7f1..8d49991 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,7 +23,7 @@ warn_unused_configs = true
 no_implicit_reexport = true
 
 [tool.bumpver]
-current_version = "0.0.0"
+current_version = "1.0.0"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit = false       # We do version bumping in CI, not as a commit
 tag = false          # Git tag already exists — we don't auto-tag
diff --git a/setup.cfg b/setup.cfg
index 6759cc4..771c68f 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = hs2p
-version = 0.0.0
+version = 1.0.0
 description = Embedding of whole slide images with Foundation Models
 author = Clément Grisi
 platforms = unix, linux, osx, cygwin, win32

From d0c0b6831a504632a229a5168eff4da1158b7a17 Mon Sep 17 00:00:00 2001
From: clemsgrs <clementnet@outlook.com>
Date: Wed, 10 Dec 2025 11:04:59 +0000
Subject: [PATCH 2/3] fix pr test

---
 .github/workflows/pr-test.yaml | 10 ----------
 setup.cfg                      |  4 +++-
 2 files changed, 3 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/pr-test.yaml b/.github/workflows/pr-test.yaml
index fb4e83e..a13ceb0 100644
--- a/.github/workflows/pr-test.yaml
+++ b/.github/workflows/pr-test.yaml
@@ -16,9 +16,6 @@ jobs:
     # don't run secret-using job on forked PRs
     if: ${{ github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository }}
 
-    env:
-      HF_TOKEN: ${{ secrets.HF_TOKEN }}
-
     steps:
       - name: Check out repository
         uses: actions/checkout@v4
@@ -56,17 +53,10 @@ jobs:
           cache-from: type=gha
           cache-to: type=gha,mode=max
 
-      - name: Guard required secret (if needed)
-        if: ${{ github.event_name != 'pull_request' }}  # or drop the condition if PRs from same repo need it
-        run: |
-          set -euo pipefail
-          test -n "${HF_TOKEN:-}" || { echo "HF_TOKEN is required but not set"; exit 1; }
-
       - name: Generate outputs in container
         run: |
           set -euo pipefail
           docker run --rm \
-            -e HF_TOKEN="$HF_TOKEN" \
             -v "$GITHUB_WORKSPACE/test/input:/input" \
             -v "$GITHUB_WORKSPACE/test/output:/output" \
             hs2p:${{ github.sha }} \
diff --git a/setup.cfg b/setup.cfg
index 771c68f..70ae6af 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -40,7 +40,9 @@ testing =
     tox>=3.24
 
 [options.package_data]
-hs2p = py.typed
+hs2p =
+    py.typed
+    configs/*.yaml
 
 [flake8]
 max-line-length = 160

From 4818ceb1623c8324c52b8b643b236f17c5a6d5f3 Mon Sep 17 00:00:00 2001
From: clemsgrs <clementnet@outlook.com>
Date: Wed, 10 Dec 2025 11:20:35 +0000
Subject: [PATCH 3/3] fix csv path for pr test

---
 test/input/config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/input/config.yaml b/test/input/config.yaml
index 6cbcbfd..cf947af 100644
--- a/test/input/config.yaml
+++ b/test/input/config.yaml
@@ -1,4 +1,4 @@
-csv: "/data/temporary/clement/code/hs2p/test/input/tmp.csv"
+csv: "/input/test.csv"
 
 output_dir: "/output"
 visualize: true