@@ -37,10 +37,6 @@ def write_to_csv(df, geo_level, write_se, day_shift, out_name, output_path=".",
3737
3838 # shift dates forward for labeling
3939 df ["timestamp" ] += day_shift
40- if start_date is None :
41- start_date = min (df ["timestamp" ])
42- if end_date is None :
43- end_date = max (df ["timestamp" ])
4440
4541 # suspicious value warnings
4642 suspicious_se_mask = df ["se" ].gt (5 )
@@ -49,7 +45,7 @@ def write_to_csv(df, geo_level, write_se, day_shift, out_name, output_path=".",
4945 if write_se :
5046 logging .info ("========= WARNING: WRITING SEs TO {0} =========" .format (out_name ))
5147 else :
52- df . loc [:, "se" ] = np .nan
48+ df [ "se" ] = np .nan
5349
5450 assert not df ["val" ].isna ().any (), " val contains nan values"
5551 suspicious_val_mask = df ["val" ].gt (90 )
@@ -113,13 +109,13 @@ def __init__(self,
113109
114110 # output file naming
115111 if self .numtype == "covid" :
116- signals = [ SMOOTHED_ADJ if self .weekday else SMOOTHED ]
112+ signal_name = SMOOTHED_ADJ if self .weekday else SMOOTHED
117113 elif self .numtype == "cli" :
118- signals = [ SMOOTHED_ADJ_CLI if self .weekday else SMOOTHED_CLI ]
119- signal_names = add_prefix (
120- signals ,
121- wip_signal = wip_signal )
122- self .updated_signal_names = signal_names
114+ signal_name = SMOOTHED_ADJ_CLI if self .weekday else SMOOTHED_CLI
115+ else :
116+ raise ValueError ( f'Unsupported numtype received " { numtype } ",'
117+ f' must be one of ["covid", "cli"]' )
118+ self .signal_name = add_prefix ([ signal_name ], wip_signal = wip_signal )[ 0 ]
123119
124120 # initialize members set in shift_dates().
125121 self .burnindate = None
@@ -231,21 +227,20 @@ def update_sensor(self,
231227 # conform to naming expected by create_export_csv()
232228 df = df .reset_index ().rename (columns = {"date" : "timestamp" , "rate" : "val" })
233229 # df.loc[~df['incl'], ["val", "se"]] = np.nan # update to this line after nancodes get merged in
234- df = df [df [' incl' ]]
230+ df = df [df [" incl" ]]
235231
236232 # write out results
233+ dates = write_to_csv (
234+ df ,
235+ geo_level = self .geo ,
236+ start_date = min (self .sensor_dates ),
237+ end_date = max (self .sensor_dates ),
238+ write_se = self .se ,
239+ day_shift = Config .DAY_SHIFT ,
240+ out_name = self .signal_name ,
241+ output_path = output_path
242+ )
237243 stats = []
238- for signal in self .updated_signal_names :
239- dates = write_to_csv (
240- df ,
241- geo_level = self .geo ,
242- start_date = min (self .sensor_dates ),
243- end_date = max (self .sensor_dates ),
244- write_se = self .se ,
245- day_shift = Config .DAY_SHIFT ,
246- out_name = signal ,
247- output_path = output_path
248- )
249- if len (dates ) > 0 :
250- stats .append ((max (dates ), len (dates )))
244+ if len (dates ) > 0 :
245+ stats = [(max (dates ), len (dates ))]
251246 return stats
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