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Jingjing TangJingjing Tang
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update signal names
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  • nchs_mortality/delphi_nchs_mortality

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nchs_mortality/delphi_nchs_mortality/run.py

Lines changed: 11 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -22,6 +22,15 @@
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'pneumonia_deaths', 'pneumonia_and_covid_deaths', 'influenza_deaths',
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'pneumonia_influenza_or_covid_19_deaths'
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]
25+
SENSOR_NAME_MAP = {
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"covid_deaths": "deaths_covid_incidence",
27+
"total_deaths": "deaths_allcause_incidence",
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"percent_of_expected_deaths": "deaths_percent_of_expected",
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"pneumonia_deaths": "deaths_pneumonia_notflu_incidence",
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"pneumonia_and_covid_deaths": "deaths_covid_and_pneumonia_notflu_incidence",
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"influenza_deaths": "deaths_flu_incidence",
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"pneumonia_influenza_or_covid_19_deaths": "deaths_pneumonia_or_flu_or_covid_incidence"
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}
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SENSORS = [
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"num",
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"prop"
@@ -62,7 +71,7 @@ def run_module():
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df["val"] = df[metric]
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df["se"] = np.nan
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df["sample_size"] = np.nan
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sensor_name = "_".join(["wip", metric])
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sensor_name = "_".join(["wip", SENSOR_NAME_MAP[metric]])
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export_csv(
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df,
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geo_name=geo_res,
@@ -79,7 +88,7 @@ def run_module():
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df["val"] = df[metric] / df["population"] * INCIDENCE_BASE
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df["se"] = np.nan
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df["sample_size"] = np.nan
82-
sensor_name = "_".join(["wip", metric, sensor])
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sensor_name = "_".join(["wip", SENSOR_NAME_MAP[metric], sensor])
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export_csv(
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df,
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geo_name=geo_res,

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