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Fixed misplaced file
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R/test-step_naomit2.R

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tests/testthat/step_naomit2.R

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library(dplyr)
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library(epiprocess)
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library(parsnip)
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library(workflows)
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# Random generated dataset
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set.seed(100)
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x <- tibble(geo_value = rep("nowhere",200),
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time_value = as.Date("2021-01-01") + 0:199,
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case_rate = rpois(100,20) + 1:200,
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death_rate = rpois(100,10) + 1:200) %>%
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as_epi_df()
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y <- tibble(geo_value = rep("nowhere",200),
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time_value = as.Date("2021-01-01") + 0:199,
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case_rate = rpois(100,20) + 1:200,
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death_rate = rpois(100,10) + 1:200) %>%
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as_epi_df()
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# Tests
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test_that("Check that epi_ahead shifts properly", {
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r1 <- epi_recipe(x) %>%
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step_epi_ahead(death_rate, ahead = 7) %>%
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step_epi_lag(death_rate, lag = c(0,7,14))
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r2 <- epi_recipe(y) %>%
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step_epi_ahead(death_rate, ahead = 7) %>%
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step_epi_lag(death_rate, lag = c(0,7,14))
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r3 <- r1 %>%
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step_naomit(all_predictors()) %>%
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step_naomit(all_outcomes(), skip = TRUE)
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r4 <- step_naomit2(r2)
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expect_identical(r3,r4)
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})

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