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remove ryantibs as code owner, some styling
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.github/CODEOWNERS

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* @ryantibs @dajmcdon @brookslogan
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* @dajmcdon @brookslogan

R/data.R

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#' Subset of JHU daily cases and deaths from California, Florida, Texas, New York, Georgia, and Pennsylvania
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#' Subset of JHU daily state cases and deaths
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#'
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#' This data source of confirmed COVID-19 cases and deaths
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#' is based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data ranges from Mar 1, 2020 to Dec 31, 2021, and is limited to California, Florida, Texas, New York, Georgia, and Pennsylvania.
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#' This data source of confirmed COVID-19 cases and deaths
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#' is based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data ranges from Mar 1, 2020 to Dec 31, 2021, and is limited to
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#' California, Florida, Texas, New York, Georgia, and Pennsylvania.
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#'
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#' @format A tibble with 4026 rows and 6 variables:
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#' \describe{
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#' \item{geo_value}{the geographic value associated with each row of measurements.}
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#' \item{geo_value}{the geographic value associated with each row
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#' of measurements.}
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#' \item{time_value}{the time value associated with each row of measurements.}
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#' \item{case_rate_7d_av}{7-day average signal of number of new confirmed COVID-19 cases per 100,000 population, daily}
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#' \item{death_rate_7d_av}{7-day average signal of number of new confirmed deaths due to COVID-19 per 100,000 population, daily}
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#' \item{case_rate_7d_av}{7-day average signal of number of new
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#' confirmed COVID-19 cases per 100,000 population, daily}
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#' \item{death_rate_7d_av}{7-day average signal of number of new confirmed
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#' deaths due to COVID-19 per 100,000 population, daily}
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#' \item{cases}{Number of new confirmed COVID-19 cases, daily}
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#' \item{cases_7d_av}{7-day average signal of number of new confirmed COVID-19 cases, daily}
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#' \item{cases_7d_av}{7-day average signal of number of new confirmed
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#' COVID-19 cases, daily}
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#' }
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#' @source This object contains a modified part of the \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University} as \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{republished in the COVIDcast Epidata API}. This data set is licensed under the terms of the
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#' \href{https://creativecommons.org/licenses/by/4.0/}{Creative Commons Attribution 4.0 International license}
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#' by the Johns Hopkins University on behalf of its Center for Systems Science in Engineering.
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#' Copyright Johns Hopkins University 2020.
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#'
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#' @source This object contains a modified part of the
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#' \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University}
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#' as \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{republished in the COVIDcast Epidata API}.
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#' This data set is licensed under the terms of the
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#' \href{https://creativecommons.org/licenses/by/4.0/}{Creative Commons Attribution 4.0 International license}
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#' by the Johns Hopkins University on behalf of its Center for Systems Science
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#' in Engineering. Copyright Johns Hopkins University 2020.
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#'
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#' Modifications:
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{From the COVIDcast Epidata API}: These signals are taken directly from the JHU CSSE \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 GitHub repository} without changes. The 7-day average signals are computed by Delphi by calculating moving averages of the preceding 7 days, so the signal for June 7 is the average of the underlying data for June 1 through 7, inclusive.
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#' * Furthermore, the data has been limited to a very small number of rows, the signal names slightly altered, and formatted into a tibble.
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{From the COVIDcast Epidata API}:
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#' These signals are taken directly from the JHU CSSE
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#' \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 GitHub repository}
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#' without changes. The 7-day average signals are computed by Delphi by
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#' calculating moving averages of the preceding 7 days, so the signal for
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#' June 7 is the average of the underlying data for June 1 through 7,
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#' inclusive.
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#' * Furthermore, the data has been limited to a very small number of rows,
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#' the signal names slightly altered, and formatted into a tibble.
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"jhu_csse_daily_subset"
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#' Subset of daily doctor visits and cases from California, Florida, Texas, and New York in archive format
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#' Subset of daily doctor visits and cases in archive format
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#'
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#' This data source is based on information about outpatient visits,
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#' provided to us by health system partners, and also contains confirmed
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#' COVID-19 cases based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data ranges from June 1, 2020 to Dec 1, 2021, and is also limited to California, Florida, Texas, and New York.
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#' This data source is based on information about outpatient visits,
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#' provided to us by health system partners, and also contains confirmed
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#' COVID-19 cases based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data ranges from June 1, 2020 to Dec 1, 2021, and
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#' is also limited to California, Florida, Texas, and New York.
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#'
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#' @format An `epi_archive` data format. The data table DT has 129,638 rows and 5 columns:
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#' \describe{
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#' \item{percent_cli}{percentage of doctor’s visits with CLI (COVID-like illness) computed from medical insurance claims}
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#' \item{case_rate_7d_av}{7-day average signal of number of new confirmed deaths due to COVID-19 per 100,000 population, daily}
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#' }
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#' @source
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#' @source
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#' This object contains a modified part of the \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 Data Repository by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University} as \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{republished in the COVIDcast Epidata API}. This data set is licensed under the terms of the
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#' \href{https://creativecommons.org/licenses/by/4.0/}{Creative Commons Attribution 4.0 International license}
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#' by Johns Hopkins University on behalf of its Center for Systems Science in Engineering.
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#' Copyright Johns Hopkins University 2020.
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#'
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#'
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#' Modifications:
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/doctor-visits.html}{From the COVIDcast Doctor Visits API}: The signal `percent_cli` is taken directly from the API without changes.
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{From the COVIDcast Epidata API}: `case_rate_7d_av` is taken directly from the JHU CSSE \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 GitHub repository} without changes. The 7-day average signals are computed by Delphi by calculating moving averages of the preceding 7 days, so the signal for June 7 is the average of the underlying data for June 1 through 7, inclusive.
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#' Subset of JHU daily cases from California and Florida
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#'
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#' This data source of confirmed COVID-19 cases
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#' is based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data is a snapshot as of Oct 28, 2021 and captures the cases from June 1, 2020 to May 31, 2021
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#'
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#' This data source of confirmed COVID-19 cases
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#' is based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data is a snapshot as of Oct 28, 2021 and captures the cases
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#' from June 1, 2020 to May 31, 2021
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#' and is limited to California and Florida.
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#'
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#'
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#' @format A tibble with 730 rows and 3 variables:
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#' \describe{
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#' \item{geo_value}{the geographic value associated with each row of measurements.}
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#' \href{https://creativecommons.org/licenses/by/4.0/}{Creative Commons Attribution 4.0 International license}
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#' by the Johns Hopkins University on behalf of its Center for Systems Science in Engineering.
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#' Copyright Johns Hopkins University 2020.
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#'
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#'
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#' Modifications:
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{From the COVIDcast Epidata API}:
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#' These signals are taken directly from the JHU CSSE \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 GitHub repository} without changes.
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{From the COVIDcast Epidata API}:
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#' These signals are taken directly from the JHU CSSE \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 GitHub repository} without changes.
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#' * Furthermore, the data has been limited to a very small number of rows, the signal names slightly altered, and formatted into a tibble.
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"incidence_num_outlier_example"
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#' Subset of JHU daily cases from counties in Massachusetts and Vermont
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#'
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#' This data source of confirmed COVID-19 cases and deaths
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#' is based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data ranges from Mar 1, 2020 to Dec 31, 2021, and is limited to Massachusetts and Vermont.
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#' This data source of confirmed COVID-19 cases and deaths
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#' is based on reports made available by the Center for
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#' Systems Science and Engineering at Johns Hopkins University.
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#' This example data ranges from Mar 1, 2020 to Dec 31, 2021,
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#' and is limited to Massachusetts and Vermont.
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#'
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#' @format A tibble with 16,212 rows and 5 variables:
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#' \describe{
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#' \href{https://creativecommons.org/licenses/by/4.0/}{Creative Commons Attribution 4.0 International license}
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#' by the Johns Hopkins University on behalf of its Center for Systems Science in Engineering.
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#' Copyright Johns Hopkins University 2020.
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#'
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#'
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#' Modifications:
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#' * \href{https://cmu-delphi.github.io/delphi-epidata/api/covidcast-signals/jhu-csse.html}{From the COVIDcast Epidata API}: These signals are taken directly from the JHU CSSE \href{https://github.com/CSSEGISandData/COVID-19}{COVID-19 GitHub repository} without changes. The 7-day average signals are computed by Delphi by calculating moving averages of the preceding 7 days, so the signal for June 7 is the average of the underlying data for June 1 through 7, inclusive.
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#' * Furthermore, the data has been limited to a very small number of rows, the signal names slightly altered, and formatted into a tibble.
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"jhu_csse_county_level_subset"

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