Skip to content

Commit 8c90c46

Browse files
committed
first draft tooling update
1 parent bcf26e8 commit 8c90c46

26 files changed

+251
-82
lines changed

config.toml

Lines changed: 57 additions & 18 deletions
Original file line numberDiff line numberDiff line change
@@ -75,11 +75,6 @@ relativeURLs = false
7575
name = "About COVIDcast"
7676
url = "/covid19/"
7777
weight = 1
78-
[[menu.main]]
79-
parent = "covid19"
80-
name = "About CTIS"
81-
url = "/covid19/ctis"
82-
weight = 10
8378
[[menu.main]]
8479
identifier = "covid19-covidcast"
8580
parent = "covid19"
@@ -124,36 +119,63 @@ relativeURLs = false
124119
weight = 1
125120
[[menu.main]]
126121
parent = "tools"
127-
name = "Delphi Epidata Dashboard"
128-
url = "/covidcast/"
129-
weight = 10
122+
name = "Delphi Tooling Book"
123+
url = "https://cmu-delphi.github.io/delphi-tooling-book/"
124+
weight = 5
125+
# packages
130126
[[menu.main]]
131127
parent = "tools"
132-
name = "COVIDcast R Package"
133-
url = "https://cmu-delphi.github.io/covidcast/covidcastR/"
134-
weight = 11
128+
identifier = "Packages"
129+
name = "Packages"
130+
weight = 6
135131
[[menu.main]]
136-
parent = "tools"
137-
name = "COVIDcast Python Package"
138-
url = "https://cmu-delphi.github.io/covidcast/covidcast-py/html/"
139-
weight = 12
132+
parent = "Packages"
133+
name = "Epidatr"
134+
url = "https://cmu-delphi.github.io/epidatr/"
135+
weight = 7
136+
[[menu.main]]
137+
parent = "Packages"
138+
name = "Epidatpy"
139+
url = "https://github.com/cmu-delphi/epidatpy"
140+
weight = 20
141+
[[menu.main]]
142+
parent = "Packages"
143+
name = "EpiProcess"
144+
url = "https://cmu-delphi.github.io/epiprocess/"
145+
weight = 7
146+
[[menu.main]]
147+
parent = "Packages"
148+
name = "EpiPredict"
149+
url = "https://cmu-delphi.github.io/epipredict/"
150+
weight = 7
151+
# utils
140152
[[menu.main]]
141153
parent = "tools"
154+
identifier = "utils"
155+
name = "Dashboards and online utils"
156+
weight = 9
157+
[[menu.main]]
158+
parent = "utils"
159+
name = "Delphi Epidata Dashboard"
160+
url = "/covidcast/"
161+
weight = 10
162+
[[menu.main]]
163+
parent = "utils"
142164
name = "Indicator Status"
143165
url = "/covidcast/indicator-status"
144166
weight = 20
145167
[[menu.main]]
146-
parent = "tools"
168+
parent = "utils"
147169
name = "Dashboard Builder"
148170
url = "/covidcast/dashboard"
149171
weight = 30
150172
[[menu.main]]
151-
parent = "tools"
173+
parent = "utils"
152174
name = "Forecast Evaluation"
153175
url = "/forecast-eval/"
154176
weight = 40
155177
[[menu.main]]
156-
parent = "tools"
178+
parent = "utils"
157179
name = "EpiVis"
158180
url = "/epivis/"
159181
weight = 50
@@ -163,6 +185,23 @@ relativeURLs = false
163185
url = "/tools/archive/"
164186
weight = 80
165187

188+
[[menu.main]]
189+
parent = "tools"
190+
identifier = "forecasting"
191+
name = "Forecasting"
192+
url = "https://www.cdc.gov/flu/weekly/flusight/index.html"
193+
weight = 50
194+
195+
[[menu.main]]
196+
parent = "forecasting"
197+
name = "COVID Forecasting"
198+
url = "https://covid19forecasthub.org/"
199+
weight = 1
200+
[[menu.main]]
201+
parent = "forecasting"
202+
name = "Flu Forecasting"
203+
url = "https://www.cdc.gov/flu/weekly/flusight/index.html"
204+
weight = 2
166205

167206
[[menu.main]]
168207
identier = "github"

content/tools/_index.md

Lines changed: 7 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -3,14 +3,16 @@ title: Tools Overview
33
linkTitle: Tools
44
layout: single
55
---
6+
## Forecasting
67

7-
## Operational Systems
8-
9-
{{<systems>}}
8+
{{<forecasting>}}
109

10+
## Packages
1111

12-
## Publicly Available Tools
12+
All source code is freely available on [GitHub](https://github.com/cmu-delphi/).
1313

1414
{{<tools>}}
1515

16-
All source code is freely available on [GitHub](https://github.com/cmu-delphi/).
16+
## Operational Systems
17+
18+
{{<systems>}}

content/tools/archive.md

Lines changed: 29 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -4,10 +4,37 @@ layout: single
44
---
55

66

7-
### [COVIDcast 1.0 ("Classic")]({{<relref "/covidcast/classic" >}})
7+
### [COVIDcast 1.0 ("Classic")](/covidcast/classic)
88

99
A map-first single-page webapp for visualizing COVID-19 pandemic indicators.
1010

1111
### [Crowdcast](/crowdcast)
1212

13-
Delphi’s "Wisdom of crowds" forecasting system: Used for Chikungunya, flu and most recently Covid. In it's archived configuration, this system is set up to forecast ILI during the COVID-19 pandemic
13+
Delphi’s "Wisdom of crowds" forecasting system: Used for Chikungunya, flu and most recently Covid. In it's archived configuration, this system was set up to forecast ILI during the COVID-19 pandemic
14+
15+
### [ILI Nearby](/nowcast)
16+
17+
Flu nowcasting system.
18+
19+
**Note:** This system is designed to nowcast ILI driven by seasonal
20+
influenza and is NOT designed to nowcast ILI during the COVID-19 pandemic.
21+
22+
### [Epiforecast](https://github.com/cmu-delphi/epiforecast-R)
23+
24+
R package that implements several methods for epidemiological forecasting empirical bayes (EB), basis regression (BR), and time-weighted kernel density estimation (twkde).
25+
26+
### [Nowcast](https://github.com/cmu-delphi/nowcast)
27+
28+
A sensor fusion based nowcasting system developed to predict ILI before the COVID-19 pandemic
29+
30+
### [utils](https://github.com/cmu-delphi/utils)
31+
32+
Old python utility package, mainly for handling dates and locations.
33+
34+
### [Fluscores](https://delphi.cmu.edu/misc/fluscores/)
35+
36+
Visual comparison of scored submissions to CDC Flu Forecasting Challenge for 2014-16 (provide your own score files).
37+
38+
## COVIDcast packages
39+
### [COVIDcast R package](https://cmu-delphi.github.io/covidcast/covidcastR/)
40+
### [COVIDcast Python package](https://cmu-delphi.github.io/covidcast/covidcast-py/html/)
Lines changed: 10 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,10 @@
1+
---
2+
title: COVID forecasting
3+
externallink: https://covid19forecasthub.org/
4+
order: 20
5+
---
6+
7+
We participate in weekly COVID hospital admissions forecasting at the state and national level.
8+
Our current system for generating forecasts can be found [here](https://github.com/cmu-delphi/covid-hosp-forecast).
9+
In addition to publishing the individual forecasts from the participating groups, the Reich lab makes an ensemble prediction, and hosts a [visualization of both](https://viz.covid19forecasthub.org).
10+
We host a comparison tool for [retrospective analysis of the forecasters](https://delphi.cmu.edu/forecast-eval/).
Lines changed: 8 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,8 @@
1+
---
2+
title: Flu forecasting FluSight
3+
externallink: https://www.cdc.gov/flu/weekly/flusight/index.html
4+
order: 22
5+
---
6+
7+
We participate in the weekly Flu forecasting hub run by the CDC during the flu season. Our current system for generating forecasts can be found [here](https://github.com/cmu-delphi/flu-hosp-forecast/).
8+
From these dozens of individual forecasts by various groups, the CDC publishes a weekly [ensemble prediction](https://www.cdc.gov/flu/weekly/flusight/flu-forecasts.htm).

content/tools/forecasting/index.md

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,5 @@
1+
---
2+
# flag to disable rendering individual pages
3+
headless: true
4+
---
5+
Lines changed: 7 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,7 @@
1+
---
2+
title: COVID Forecasting Evaluation
3+
externallink: https://delphi.cmu.edu/forecast-eval/
4+
order: 20
5+
---
6+
7+
A forecast evaluation dashboard to compare the historical performance of the forecasts submitted to the [COVID-19 Forecast Hub](https://covid19forecasthub.org/), a collaboration between various modeling teams to produce forecasts of daily hospital admissions.

content/tools/systems/crowdcast.md

Lines changed: 0 additions & 9 deletions
This file was deleted.
Lines changed: 7 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,7 @@
1+
---
2+
title: Dashboard Builder
3+
internallink: covidcast/dashboard
4+
order: 21
5+
---
6+
7+
A builder that allows you to customize the [Delphi Epidata Dashboard](/covidcast/).
File renamed without changes.

0 commit comments

Comments
 (0)