From 87ca2b9125237e8a409f6ceca29bc2f0ba6d71a4 Mon Sep 17 00:00:00 2001 From: malteos Date: Fri, 15 Aug 2025 13:18:38 +0000 Subject: [PATCH 01/23] feat: Adding filter_cdx and warc_by_cdx commands --- cdx_toolkit/cli.py | 91 ++++++++++++++++ cdx_toolkit/filter_cdx/__init__.py | 167 +++++++++++++++++++++++++++++ cdx_toolkit/filter_cdx/args.py | 64 +++++++++++ cdx_toolkit/filter_cdx/matcher.py | 67 ++++++++++++ setup.py | 3 + 5 files changed, 392 insertions(+) create mode 100644 cdx_toolkit/filter_cdx/__init__.py create mode 100644 cdx_toolkit/filter_cdx/args.py create mode 100644 cdx_toolkit/filter_cdx/matcher.py diff --git a/cdx_toolkit/cli.py b/cdx_toolkit/cli.py index 6ffa393..4d0ae13 100644 --- a/cdx_toolkit/cli.py +++ b/cdx_toolkit/cli.py @@ -4,9 +4,14 @@ import sys import json import os +from typing import Iterable + +import smart_open import cdx_toolkit from cdx_toolkit.commoncrawl import normalize_crawl +from cdx_toolkit.filter_cdx import run_filter_cdx +from cdx_toolkit.filter_cdx.args import add_filter_cdx_args LOGGER = logging.getLogger(__name__) @@ -54,6 +59,20 @@ def main(args=None): warc.add_argument('url') warc.set_defaults(func=warcer) + warc_by_cdx = subparsers.add_parser('warc_by_cdx', help='iterate over capture content based on an CDX index file, creating a warc') + warc_by_cdx.add_argument('--prefix', default='TEST', help='prefix for the warc filename') + warc_by_cdx.add_argument('--subprefix', type=str, default=None, help='subprefix for the warc filename, default None') + warc_by_cdx.add_argument('--size', type=int, default=1000000000, help='target for the warc filesize in bytes') + warc_by_cdx.add_argument('--creator', action='store', help='creator of the warc: person, organization, service') + warc_by_cdx.add_argument('--operator', action='store', help='a person, if the creator is an organization') + warc_by_cdx.add_argument('--warc-download-prefix', action='store', help='prefix for downloading content, automatically set for CC') + warc_by_cdx.add_argument('index_path') + warc_by_cdx.set_defaults(func=warcer_by_cdx) + + filter_cdx = subparsers.add_parser('filter_cdx', help='Filter CDX files based on SURT prefixes whitelist') + add_filter_cdx_args(filter_cdx) + filter_cdx.set_defaults(func=run_filter_cdx) + size = subparsers.add_parser('size', help='imprecise count of how many results are available') size.add_argument('--details', action='store_true', help='show details of each subindex') size.add_argument('url') @@ -214,8 +233,80 @@ def warcer(cmd, cmdline): writer.write_record(record) + +def warcer_by_cdx(cmd, cmdline): + """Like warcer but fetches WARC records based on an CDX index file. + + Approach: + - Iterate over CDX file to extract capture object (file, offset, length) + - Fetch WARC record based on capture object + - Write to new WARC file with metadata + """ + cdx, kwargs = setup(cmd) + + ispartof = cmd.prefix + if cmd.subprefix: + ispartof += '-' + cmd.subprefix + + info = { + 'software': 'pypi_cdx_toolkit/'+get_version(), + 'isPartOf': ispartof, + 'description': 'warc extraction generated with: '+cmdline, + 'format': 'WARC file version 1.0', # todo: if we directly read a warc, have this match the warc + # TODO add information from the index file + } + if cmd.creator: + info['creator'] = cmd.creator + if cmd.operator: + info['operator'] = cmd.operator + + kwargs_writer = {} + if 'size' in kwargs: + kwargs_writer['size'] = kwargs['size'] + del kwargs['size'] + + writer = cdx_toolkit.warc.get_writer(cmd.prefix, cmd.subprefix, info, **kwargs_writer) + + def get_caputure_objects_from_index_file(index_path: str, warc_download_prefix=None) -> Iterable[cdx_toolkit.CaptureObject]: + """Read CDX index file and generate CaptureObject objects.""" + with smart_open.open(index_path) as f: + for line in enumerate(f): + cols = line.split(" ", maxsplit=2) + + if len(cols) == 3: + # TODO can there be a different format? + # surt, timestamp, json_data = cols + data = json.loads(cols[2]) + data["timestamp"] = cols[1] + else: + raise ValueError(f"Cannot parse line: {line}") + + yield cdx_toolkit.CaptureObject( + data=data, wb=None, warc_download_prefix=warc_download_prefix + ) + + # TODO probably we should support multiple indices as input + + # The index file holds all the information to download specific objects (file, offset, length etc.) + for obj in get_caputure_objects_from_index_file(index_path=cmd.index_path, warc_download_prefix=cmd.warc_download_prefix): + url = obj['url'] + + timestamp = obj['timestamp'] + try: + record = obj.fetch_warc_record() + except RuntimeError: # pragma: no cover + LOGGER.warning('skipping capture for RuntimeError 404: %s %s', url, timestamp) + continue + if obj.is_revisit(): + LOGGER.warning('revisit record being resolved for url %s %s', url, timestamp) + writer.write_record(record) + def sizer(cmd, cmdline): cdx, kwargs = setup(cmd) size = cdx.get_size_estimate(cmd.url, **kwargs) print(size) + + +if __name__ == "__main__": + main() diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py new file mode 100644 index 0000000..1b7437c --- /dev/null +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -0,0 +1,167 @@ + +import logging +import time +import os +import sys +import glob + +from cdx_toolkit.filter_cdx.args import validate_args +from cdx_toolkit.filter_cdx.matcher import TupleMatcher, TrieMatcher + +try: + import smart_open + smart_open_installed = True +except ImportError: + smart_open_installed = True + +logger = logging.getLogger(__name__) + +def run_filter_cdx(args, cmdline: str): + """Filter CDX index files based on a given SURT whitelist. + + - A index entry's SURT must start with one of the SURTs from the whiteliste to be considered. + - All other index entries are discarded. + - All input/output paths can be local or remote paths (S3, ...) and compressed (*.gz). + """ + + validate_args(args) + + # Resolve input and output paths using glob pattern + # TODO this should support glob via S3 (e.g., to fetch the indices from s3://commoncrawl/cc-index/collections/* ...) + input_paths, output_paths = resolve_paths(args) + validate_resolved_paths(output_paths, args.overwrite) + + logger.info("Filtering CDX files based on whitelist") + logger.info(f"Found {len(input_paths)} files matching pattern: {os.path.join(args.input_base_path, args.input_glob)}") + + # Ensure output directories exist + # TODO make sure this works with remote paths as well! + ensure_output_directories(output_paths) + + # Start timing + start_time = time.time() + + # Load SURT prefixes + with optional_smart_open(args.surts_file) as input_f: + include_surt_prefixes = [line.strip() for line in input_f.readlines()] + + # Create matcher based on selected approach + matcher_classes = { + "trie": TrieMatcher, + "tuple": TupleMatcher, + } + + matcher = matcher_classes[args.matching_approach](include_surt_prefixes) + + logger.info( + f"Loaded {len(include_surt_prefixes):,} surts using {args.matching_approach} approach" + ) + + # Process each input/output file pair + total_lines_n = 0 + total_included_n = 0 + + for input_path, output_path in zip(input_paths, output_paths): + logger.info("Reading index from %s", input_path) + logger.info("Writing filter output to %s", output_path) + + lines_n = 0 + included_n = 0 + + with optional_smart_open(output_path, "w") as output_f: + with optional_smart_open(input_path) as input_f: + for i, line in enumerate(input_f): + surt_length = line.find( + " " + ) # we do not need to parse the full line + record_surt = line[:surt_length] + lines_n += 1 + + # Use matcher + include_record = matcher.matches(record_surt) + + if include_record: + output_f.write(line) + included_n += 1 + + if (i % 100_000) == 0: + logger.info(f"Lines completed: {i:,}") + + logger.info( + f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" + ) + total_lines_n += lines_n + total_included_n += included_n + + logger.info( + f"Total statistics: included_n={total_included_n}; lines_n={total_lines_n}; ratio={total_included_n/total_lines_n:.4f}" + ) + + # End timing and log execution time + end_time = time.time() + execution_time = end_time - start_time + + logger.info( + f"Script execution time: {execution_time:.3f} seconds" + ) + +def optional_smart_open(*args, **kwargs): + """Helper function to make `smart_open` an optional dependency.""" + if smart_open_installed: + return smart_open.open(*args, **kwargs) + else: + return open(*args, **kwargs) + +def resolve_paths(args): + """Resolve input paths from glob pattern and generate corresponding output paths.""" + # Construct full glob pattern + full_glob_pattern = os.path.join(args.input_base_path, args.input_glob) + + # Get input files from glob pattern + input_files = glob.glob(full_glob_pattern, recursive=True) + if not input_files: + logger.error(f"No files found matching glob pattern: {full_glob_pattern}") + sys.exit(1) + + # Sort for consistent ordering + input_files.sort() + + # Generate corresponding output paths + output_files = [] + for input_path in input_files: + # Get relative path from input_base_path + rel_path = os.path.relpath(input_path, args.input_base_path) + + # Create corresponding output path + output_path = os.path.join(args.output_base_path, rel_path) + output_files.append(output_path) + + return input_files, output_files + + +def ensure_output_directories(output_paths): + """Ensure all output directories exist, creating them if necessary.""" + created_dirs = set() + for output_path in output_paths: + output_dir = os.path.dirname(output_path) + if output_dir and output_dir not in created_dirs: + os.makedirs(output_dir, exist_ok=True) + created_dirs.add(output_dir) + + if created_dirs: + logger.info(f"Created {len(created_dirs)} output directories") + + + +def validate_resolved_paths(output_paths, overwrite): + """Validate resolved output paths.""" + # Check if output files exist and overwrite flag + if not overwrite: + for output_path in output_paths: + if os.path.exists(output_path): + logger.error( + f"Output file already exists: {output_path}. " + "Use --overwrite to overwrite existing files." + ) + sys.exit(1) + diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py new file mode 100644 index 0000000..af2a8f8 --- /dev/null +++ b/cdx_toolkit/filter_cdx/args.py @@ -0,0 +1,64 @@ +import os +import sys +import logging +import argparse + + +logger = logging.getLogger(__name__) + + +def add_filter_cdx_args(parser: argparse.ArgumentParser): + """Add command line arguments.""" + parser.add_argument( + "input_base_path", + help="Base directory path for input files" + ) + + parser.add_argument( + "input_glob", + help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')" + ) + + parser.add_argument( + "output_base_path", + help="Base directory path for output files (directory structure will be replicated from input_base_path)" + ) + + parser.add_argument( + "--surts_file", + required=True, + help="Path to file containing SURT prefixes to match (one per line)", + ) + + parser.add_argument( + "--matching_approach", + choices=["trie", "tuple"], + default="trie", + help="Matching approach to use (default: trie)", + ) + + parser.add_argument( + "--overwrite", + action="store_true", + help="Allow overwriting existing output files", + ) + + return parser + + + +def validate_args(args): + """Validate command line arguments.""" + # Check that surts file exists + if not os.path.exists(args.surts_file): + logger.error(f"SURT file not found: {args.surts_file}") + sys.exit(1) + + # Check that input_base_path exists + if not os.path.exists(args.input_base_path): + logger.error(f"Input base path not found: {args.input_base_path}") + sys.exit(1) + + if not os.path.isdir(args.input_base_path): + logger.error(f"Input base path is not a directory: {args.input_base_path}") + sys.exit(1) diff --git a/cdx_toolkit/filter_cdx/matcher.py b/cdx_toolkit/filter_cdx/matcher.py new file mode 100644 index 0000000..75c8af0 --- /dev/null +++ b/cdx_toolkit/filter_cdx/matcher.py @@ -0,0 +1,67 @@ +import logging +from abc import ABC, abstractmethod + +logger = logging.getLogger(__name__) + + +class Matcher(ABC): + """Base class for all matching approaches.""" + + @abstractmethod + def __init__(self, prefixes: tuple[str] | list[str]): + """Initialize the matcher with a list of prefixes.""" + pass + + @abstractmethod + def matches(self, text: str) -> bool: + """Check if text starts with any of the prefixes.""" + pass + + +class TrieNode: + def __init__(self): + self.children = {} + self.is_end = False + + +class TrieMatcher(Matcher): + """Trie-based matching approach.""" + + def __init__(self, prefixes: tuple[str] | list[str]): + logger.info(f"Building trie matcher based on {len(prefixes):,} inputs") + self.root = self._build_trie(prefixes) + + def _build_trie(self, prefixes: tuple[str] | list[str]): + """Build a trie from a collection of prefixes.""" + root = TrieNode() + for prefix in prefixes: + node = root + for char in prefix: + if char not in node.children: + node.children[char] = TrieNode() + node = node.children[char] + node.is_end = True + return root + + def matches(self, text: str) -> bool: + """Check if text starts with any prefix in the trie.""" + node = self.root + for char in text: + if char not in node.children: + return False + node = node.children[char] + if node.is_end: + return True + return False + + +class TupleMatcher(Matcher): + """Tuple-based matching approach using startswith.""" + + def __init__(self, prefixes: tuple[str] | list[str]): + logger.info(f"Building tuple matcher based on {len(prefixes):,} inputs") + self.prefixes_tuple = tuple(prefixes) + + def matches(self, text: str) -> bool: + """Check if text starts with any prefix in the tuple.""" + return text.startswith(self.prefixes_tuple) diff --git a/setup.py b/setup.py index bceaefb..3b30256 100755 --- a/setup.py +++ b/setup.py @@ -16,9 +16,12 @@ package_requirements = ['twine', 'setuptools', 'setuptools-scm'] +warc_by_cdx_requirements = ['smart-open'] + extras_require = { 'test': test_requirements, # setup no longer tests, so make them an extra 'package': package_requirements, + 'warc_by_cdx': warc_by_cdx_requirements, # extra for the "warc_by_cdx command } scripts = ['scripts/cdx_size', 'scripts/cdx_iter'] From e331beeeb5897ce762d0ea507ff5103dc54939e2 Mon Sep 17 00:00:00 2001 From: malteos Date: Tue, 19 Aug 2025 17:04:07 +0000 Subject: [PATCH 02/23] Adding unit test for filter_cdx command, some refactoring --- cdx_toolkit/cli.py | 130 ++---------------- cdx_toolkit/filter_cdx/__init__.py | 131 +++++++++---------- cdx_toolkit/filter_cdx/args.py | 34 +---- cdx_toolkit/utils.py | 48 +++++++ cdx_toolkit/warcer_by_cdx/__init__.py | 103 +++++++++++++++ cdx_toolkit/warcer_by_cdx/args.py | 20 +++ requirements.txt | 1 + setup.py | 5 +- tests/data/filter_cdx/whitelist_10_surts.txt | 10 ++ tests/test_cli_filter_cdx.py | 49 +++++++ 10 files changed, 312 insertions(+), 219 deletions(-) create mode 100644 cdx_toolkit/utils.py create mode 100644 cdx_toolkit/warcer_by_cdx/__init__.py create mode 100644 cdx_toolkit/warcer_by_cdx/args.py create mode 100644 tests/data/filter_cdx/whitelist_10_surts.txt create mode 100644 tests/test_cli_filter_cdx.py diff --git a/cdx_toolkit/cli.py b/cdx_toolkit/cli.py index 4d0ae13..0ca89db 100644 --- a/cdx_toolkit/cli.py +++ b/cdx_toolkit/cli.py @@ -4,15 +4,18 @@ import sys import json import os -from typing import Iterable - -import smart_open import cdx_toolkit -from cdx_toolkit.commoncrawl import normalize_crawl + +from cdx_toolkit.utils import get_version, setup + from cdx_toolkit.filter_cdx import run_filter_cdx from cdx_toolkit.filter_cdx.args import add_filter_cdx_args +from cdx_toolkit.warcer_by_cdx import run_warcer_by_cdx +from cdx_toolkit.warcer_by_cdx.args import add_warcer_by_cdx_args + + LOGGER = logging.getLogger(__name__) @@ -60,14 +63,8 @@ def main(args=None): warc.set_defaults(func=warcer) warc_by_cdx = subparsers.add_parser('warc_by_cdx', help='iterate over capture content based on an CDX index file, creating a warc') - warc_by_cdx.add_argument('--prefix', default='TEST', help='prefix for the warc filename') - warc_by_cdx.add_argument('--subprefix', type=str, default=None, help='subprefix for the warc filename, default None') - warc_by_cdx.add_argument('--size', type=int, default=1000000000, help='target for the warc filesize in bytes') - warc_by_cdx.add_argument('--creator', action='store', help='creator of the warc: person, organization, service') - warc_by_cdx.add_argument('--operator', action='store', help='a person, if the creator is an organization') - warc_by_cdx.add_argument('--warc-download-prefix', action='store', help='prefix for downloading content, automatically set for CC') - warc_by_cdx.add_argument('index_path') - warc_by_cdx.set_defaults(func=warcer_by_cdx) + add_warcer_by_cdx_args(warc_by_cdx) + warc_by_cdx.set_defaults(func=run_warcer_by_cdx) filter_cdx = subparsers.add_parser('filter_cdx', help='Filter CDX files based on SURT prefixes whitelist') add_filter_cdx_args(filter_cdx) @@ -108,48 +105,6 @@ def set_loglevel(cmd): LOGGER.info('set loglevel to %s', str(loglevel)) -def get_version(): - return cdx_toolkit.__version__ - - -def setup(cmd): - kwargs = {} - kwargs['source'] = 'cc' if cmd.crawl else cmd.cc or cmd.ia or cmd.source or None - if kwargs['source'] is None: - raise ValueError('must specify --cc, --ia, or a --source') - if cmd.wb: - kwargs['wb'] = cmd.wb - if cmd.cc_mirror: - kwargs['cc_mirror'] = cmd.cc_mirror - if cmd.crawl: - kwargs['crawl'] = normalize_crawl([cmd.crawl]) # currently a string, not a list - if getattr(cmd, 'warc_download_prefix', None) is not None: - kwargs['warc_download_prefix'] = cmd.warc_download_prefix - - cdx = cdx_toolkit.CDXFetcher(**kwargs) - - kwargs = {} - if cmd.limit: - kwargs['limit'] = cmd.limit - if 'from' in vars(cmd) and vars(cmd)['from']: # python, uh, from is a reserved word - kwargs['from_ts'] = vars(cmd)['from'] - if cmd.to: - kwargs['to'] = cmd.to - if cmd.closest: - if not cmd.get: # pragma: no cover - LOGGER.info('note: --closest works best with --get') - kwargs['closest'] = cmd.closest - if cmd.filter: - kwargs['filter'] = cmd.filter - - if cmd.cmd == 'warc' and cmd.size: - kwargs['size'] = cmd.size - - if cmd.cmd == 'size' and cmd.details: - kwargs['details'] = cmd.details - - return cdx, kwargs - def winnow_fields(cmd, fields, obj): if cmd.all_fields: @@ -234,73 +189,6 @@ def warcer(cmd, cmdline): -def warcer_by_cdx(cmd, cmdline): - """Like warcer but fetches WARC records based on an CDX index file. - - Approach: - - Iterate over CDX file to extract capture object (file, offset, length) - - Fetch WARC record based on capture object - - Write to new WARC file with metadata - """ - cdx, kwargs = setup(cmd) - - ispartof = cmd.prefix - if cmd.subprefix: - ispartof += '-' + cmd.subprefix - - info = { - 'software': 'pypi_cdx_toolkit/'+get_version(), - 'isPartOf': ispartof, - 'description': 'warc extraction generated with: '+cmdline, - 'format': 'WARC file version 1.0', # todo: if we directly read a warc, have this match the warc - # TODO add information from the index file - } - if cmd.creator: - info['creator'] = cmd.creator - if cmd.operator: - info['operator'] = cmd.operator - - kwargs_writer = {} - if 'size' in kwargs: - kwargs_writer['size'] = kwargs['size'] - del kwargs['size'] - - writer = cdx_toolkit.warc.get_writer(cmd.prefix, cmd.subprefix, info, **kwargs_writer) - - def get_caputure_objects_from_index_file(index_path: str, warc_download_prefix=None) -> Iterable[cdx_toolkit.CaptureObject]: - """Read CDX index file and generate CaptureObject objects.""" - with smart_open.open(index_path) as f: - for line in enumerate(f): - cols = line.split(" ", maxsplit=2) - - if len(cols) == 3: - # TODO can there be a different format? - # surt, timestamp, json_data = cols - data = json.loads(cols[2]) - data["timestamp"] = cols[1] - else: - raise ValueError(f"Cannot parse line: {line}") - - yield cdx_toolkit.CaptureObject( - data=data, wb=None, warc_download_prefix=warc_download_prefix - ) - - # TODO probably we should support multiple indices as input - - # The index file holds all the information to download specific objects (file, offset, length etc.) - for obj in get_caputure_objects_from_index_file(index_path=cmd.index_path, warc_download_prefix=cmd.warc_download_prefix): - url = obj['url'] - - timestamp = obj['timestamp'] - try: - record = obj.fetch_warc_record() - except RuntimeError: # pragma: no cover - LOGGER.warning('skipping capture for RuntimeError 404: %s %s', url, timestamp) - continue - if obj.is_revisit(): - LOGGER.warning('revisit record being resolved for url %s %s', url, timestamp) - writer.write_record(record) - def sizer(cmd, cmdline): cdx, kwargs = setup(cmd) diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py index 1b7437c..92152c7 100644 --- a/cdx_toolkit/filter_cdx/__init__.py +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -1,48 +1,44 @@ import logging -import time import os +import time import sys -import glob -from cdx_toolkit.filter_cdx.args import validate_args +import fsspec + from cdx_toolkit.filter_cdx.matcher import TupleMatcher, TrieMatcher -try: - import smart_open - smart_open_installed = True -except ImportError: - smart_open_installed = True logger = logging.getLogger(__name__) def run_filter_cdx(args, cmdline: str): """Filter CDX index files based on a given SURT whitelist. - - A index entry's SURT must start with one of the SURTs from the whiteliste to be considered. + - A index entry's SURT must start with one of the SURTs from the whitelist to be considered. - All other index entries are discarded. - All input/output paths can be local or remote paths (S3, ...) and compressed (*.gz). """ + logger.info("Filtering CDX files based on whitelist") - validate_args(args) + # Start timing + start_time = time.time() # Resolve input and output paths using glob pattern - # TODO this should support glob via S3 (e.g., to fetch the indices from s3://commoncrawl/cc-index/collections/* ...) - input_paths, output_paths = resolve_paths(args) + # This should support glob via S3 (e.g., to fetch the indices from s3://commoncrawl/cc-index/collections/* ...) + input_paths, output_paths = resolve_paths(input_base_path=args.input_base_path, input_glob=args.input_glob, output_base_path=args.output_base_path) validate_resolved_paths(output_paths, args.overwrite) - logger.info("Filtering CDX files based on whitelist") - logger.info(f"Found {len(input_paths)} files matching pattern: {os.path.join(args.input_base_path, args.input_glob)}") + logger.info(f"Found {len(input_paths)} files matching pattern: {args.input_base_path}/{args.input_glob}") - # Ensure output directories exist - # TODO make sure this works with remote paths as well! - ensure_output_directories(output_paths) - - # Start timing - start_time = time.time() + # Load SURT prefixes from file (each line is a surt) + surt_fs, surt_fs_path = fsspec.url_to_fs(args.surts_file) + logger.info("Loading whitelist from %s", surt_fs_path) - # Load SURT prefixes - with optional_smart_open(args.surts_file) as input_f: + if not surt_fs.exists(surt_fs_path): # Check that surts file exists + logger.error(f"SURT file not found: {surt_fs_path}") + sys.exit(1) + + with surt_fs.open(surt_fs_path, "rt") as input_f: include_surt_prefixes = [line.strip() for line in input_f.readlines()] # Create matcher based on selected approach @@ -60,6 +56,7 @@ def run_filter_cdx(args, cmdline: str): # Process each input/output file pair total_lines_n = 0 total_included_n = 0 + log_every_n = 100_000 for input_path, output_path in zip(input_paths, output_paths): logger.info("Reading index from %s", input_path) @@ -68,9 +65,20 @@ def run_filter_cdx(args, cmdline: str): lines_n = 0 included_n = 0 - with optional_smart_open(output_path, "w") as output_f: - with optional_smart_open(input_path) as input_f: - for i, line in enumerate(input_f): + # Input/output from local or remote file system + input_fs, input_fs_path = fsspec.url_to_fs(input_path) + output_fs, output_fs_path = fsspec.url_to_fs(output_path) + + # Make sure output directory exists + output_fs.makedirs(output_fs._parent(output_fs_path), exist_ok=True) + + # Read and write compressed file if needed + compression = "gzip" if input_fs_path.endswith(".gz") else None + + with output_fs.open(output_fs_path, "w", compression=compression) as output_f: + with input_fs.open(input_fs_path, "rt", compression=compression) as input_f: + for i, line in enumerate(input_f, 1): + # Read CDX line surt_length = line.find( " " ) # we do not need to parse the full line @@ -84,8 +92,13 @@ def run_filter_cdx(args, cmdline: str): output_f.write(line) included_n += 1 - if (i % 100_000) == 0: - logger.info(f"Lines completed: {i:,}") + if args.limit > 0 and included_n >= args.limit: + logger.info("Limit reached at %i", args.limit) + break + + + if (i % log_every_n) == 0: + logger.info(f"Lines completed: {i:,} (matched: {included_n:,})") logger.info( f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" @@ -105,63 +118,47 @@ def run_filter_cdx(args, cmdline: str): f"Script execution time: {execution_time:.3f} seconds" ) -def optional_smart_open(*args, **kwargs): - """Helper function to make `smart_open` an optional dependency.""" - if smart_open_installed: - return smart_open.open(*args, **kwargs) - else: - return open(*args, **kwargs) -def resolve_paths(args): +def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str): """Resolve input paths from glob pattern and generate corresponding output paths.""" - # Construct full glob pattern - full_glob_pattern = os.path.join(args.input_base_path, args.input_glob) - + # Use fsspec to handle local and remote file systems + input_fs, input_fs_base_path = fsspec.url_to_fs(input_base_path) + input_full_glob = input_fs_base_path + input_glob + # Get input files from glob pattern - input_files = glob.glob(full_glob_pattern, recursive=True) - if not input_files: - logger.error(f"No files found matching glob pattern: {full_glob_pattern}") + input_fs_file_paths = sorted(input_fs.glob(input_full_glob)) + if not input_fs_file_paths: + logger.error(f"No files found matching glob pattern: {input_full_glob}") sys.exit(1) - # Sort for consistent ordering - input_files.sort() - # Generate corresponding output paths - output_files = [] - for input_path in input_files: - # Get relative path from input_base_path - rel_path = os.path.relpath(input_path, args.input_base_path) + output_file_paths = [] + input_file_paths = [] + for input_path in input_fs_file_paths: + # Get relative path from input_base_path without last slash + rel_path = input_path[len(input_fs_base_path)+1:] - # Create corresponding output path - output_path = os.path.join(args.output_base_path, rel_path) - output_files.append(output_path) + # Create corresponding full input and output path + output_file_paths.append(os.path.join(output_base_path, rel_path)) + input_file_paths.append(os.path.join(input_base_path, rel_path)) - return input_files, output_files - - -def ensure_output_directories(output_paths): - """Ensure all output directories exist, creating them if necessary.""" - created_dirs = set() - for output_path in output_paths: - output_dir = os.path.dirname(output_path) - if output_dir and output_dir not in created_dirs: - os.makedirs(output_dir, exist_ok=True) - created_dirs.add(output_dir) - - if created_dirs: - logger.info(f"Created {len(created_dirs)} output directories") - + return input_file_paths, output_file_paths def validate_resolved_paths(output_paths, overwrite): - """Validate resolved output paths.""" + """Validate resolved output paths and create directories if needed.""" # Check if output files exist and overwrite flag if not overwrite: + output_fs, _ = fsspec.url_to_fs(output_paths[0]) for output_path in output_paths: - if os.path.exists(output_path): + if output_fs.exists(output_path): logger.error( f"Output file already exists: {output_path}. " "Use --overwrite to overwrite existing files." ) sys.exit(1) + # Make sure directory exists + output_fs.makedirs(output_fs._parent(output_path), exist_ok=True) + + diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py index af2a8f8..02e46fe 100644 --- a/cdx_toolkit/filter_cdx/args.py +++ b/cdx_toolkit/filter_cdx/args.py @@ -3,6 +3,8 @@ import logging import argparse +import fsspec + logger = logging.getLogger(__name__) @@ -11,25 +13,20 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): """Add command line arguments.""" parser.add_argument( "input_base_path", - help="Base directory path for input files" + help="Base directory path or remote URL for one or multiple input files (e.g., URL to S3 bucket)" ) - parser.add_argument( - "input_glob", - help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')" + "surts_file", + help="Path to file containing SURT prefixes to match (one per line)", ) - parser.add_argument( "output_base_path", help="Base directory path for output files (directory structure will be replicated from input_base_path)" ) - parser.add_argument( - "--surts_file", - required=True, - help="Path to file containing SURT prefixes to match (one per line)", + "--input_glob", + help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')" ) - parser.add_argument( "--matching_approach", choices=["trie", "tuple"], @@ -45,20 +42,3 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): return parser - - -def validate_args(args): - """Validate command line arguments.""" - # Check that surts file exists - if not os.path.exists(args.surts_file): - logger.error(f"SURT file not found: {args.surts_file}") - sys.exit(1) - - # Check that input_base_path exists - if not os.path.exists(args.input_base_path): - logger.error(f"Input base path not found: {args.input_base_path}") - sys.exit(1) - - if not os.path.isdir(args.input_base_path): - logger.error(f"Input base path is not a directory: {args.input_base_path}") - sys.exit(1) diff --git a/cdx_toolkit/utils.py b/cdx_toolkit/utils.py new file mode 100644 index 0000000..f175d76 --- /dev/null +++ b/cdx_toolkit/utils.py @@ -0,0 +1,48 @@ +import cdx_toolkit +from cdx_toolkit.commoncrawl import normalize_crawl + +import logging + +LOGGER = logging.getLogger(__name__) + +def get_version(): + return cdx_toolkit.__version__ + + +def setup(cmd): + kwargs = {} + kwargs['source'] = 'cc' if cmd.crawl else cmd.cc or cmd.ia or cmd.source or None + if kwargs['source'] is None: + raise ValueError('must specify --cc, --ia, or a --source') + if cmd.wb: + kwargs['wb'] = cmd.wb + if cmd.cc_mirror: + kwargs['cc_mirror'] = cmd.cc_mirror + if cmd.crawl: + kwargs['crawl'] = normalize_crawl([cmd.crawl]) # currently a string, not a list + if getattr(cmd, 'warc_download_prefix', None) is not None: + kwargs['warc_download_prefix'] = cmd.warc_download_prefix + + cdx = cdx_toolkit.CDXFetcher(**kwargs) + + kwargs = {} + if cmd.limit: + kwargs['limit'] = cmd.limit + if 'from' in vars(cmd) and vars(cmd)['from']: # python, uh, from is a reserved word + kwargs['from_ts'] = vars(cmd)['from'] + if cmd.to: + kwargs['to'] = cmd.to + if cmd.closest: + if not cmd.get: # pragma: no cover + LOGGER.info('note: --closest works best with --get') + kwargs['closest'] = cmd.closest + if cmd.filter: + kwargs['filter'] = cmd.filter + + if cmd.cmd == 'warc' and cmd.size: + kwargs['size'] = cmd.size + + if cmd.cmd == 'size' and cmd.details: + kwargs['details'] = cmd.details + + return cdx, kwargs diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py new file mode 100644 index 0000000..f6a109e --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -0,0 +1,103 @@ + +import json +import logging +import sys +from typing import Iterable + +import fsspec + +import cdx_toolkit +from cdx_toolkit.utils import get_version, setup + + +LOGGER = logging.getLogger(__name__) + + +def run_warcer_by_cdx(cmd, cmdline): + """Like warcer but fetches WARC records based on an CDX index file. + + Approach: + - Iterate over CDX file to extract capture object (file, offset, length) + - Fetch WARC record based on capture object + - Write to new WARC file with metadata + """ + cdx, kwargs = setup(cmd) + + ispartof = cmd.prefix + if cmd.subprefix: + ispartof += '-' + cmd.subprefix + + info = { + 'software': 'pypi_cdx_toolkit/'+get_version(), + 'isPartOf': ispartof, + 'description': 'warc extraction generated with: '+cmdline, + 'format': 'WARC file version 1.0', # todo: if we directly read a warc, have this match the warc + # TODO add information from the index file + } + if cmd.creator: + info['creator'] = cmd.creator + if cmd.operator: + info['operator'] = cmd.operator + + kwargs_writer = {} + if 'size' in kwargs: + kwargs_writer['size'] = kwargs['size'] + del kwargs['size'] + + writer = cdx_toolkit.warc.get_writer(cmd.prefix, cmd.subprefix, info, **kwargs_writer) + + # TODO probably we should support multiple indices as input + + if cmd.index_glob is None: + # Read from a single index + index_paths = [cmd.index_path] + else: + # Fetch multiple indicies via glob + index_fs, index_fs_path = fsspec.url_to_fs(cmd.index_path) + index_paths = sorted(index_fs.glob(cmd.index_glob)) + + LOGGER.info('glob pattern found %i index files in %s', len(index_paths), index_fs_path) + + if not index_paths: + LOGGER.error('no index files found') + sys.exit(1) + + # Iterate over index files + for index_path in index_paths: + LOGGER.info('filtering based on index from %s', index_path) + + # The index file holds all the information to download specific objects (file, offset, length etc.) + for obj in get_caputure_objects_from_index_file(index_path=index_path, warc_download_prefix=cmd.warc_download_prefix): + url = obj['url'] + + timestamp = obj['timestamp'] + try: + record = obj.fetch_warc_record() + except RuntimeError: # pragma: no cover + LOGGER.warning('skipping capture for RuntimeError 404: %s %s', url, timestamp) + continue + if obj.is_revisit(): + LOGGER.warning('revisit record being resolved for url %s %s', url, timestamp) + writer.write_record(record) + + LOGGER.info('filtering completed (index: %s)', index_path) + +def get_caputure_objects_from_index_file(index_path: str, warc_download_prefix=None) -> Iterable[cdx_toolkit.CaptureObject]: + """Read CDX index file and generate CaptureObject objects.""" + index_fs, index_fs_path = fsspec.url_to_fs(index_path) + + with index_fs.open(index_fs_path) as f: + for line in enumerate(f): + cols = line.split(" ", maxsplit=2) + + if len(cols) == 3: + # TODO can there be a different format? + # surt, timestamp, json_data = cols + data = json.loads(cols[2]) + data["timestamp"] = cols[1] + else: + raise ValueError(f"Cannot parse line: {line}") + + yield cdx_toolkit.CaptureObject( + data=data, wb=None, warc_download_prefix=warc_download_prefix + ) diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py new file mode 100644 index 0000000..f31ac2f --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -0,0 +1,20 @@ +import os +import sys +import logging +import argparse + + +logger = logging.getLogger(__name__) + + +def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): + parser.add_argument('--prefix', default='TEST', help='prefix for the warc filename') + parser.add_argument('--subprefix', type=str, default=None, help='subprefix for the warc filename, default None') + parser.add_argument('--size', type=int, default=1000000000, help='target for the warc filesize in bytes') + parser.add_argument('--creator', action='store', help='creator of the warc: person, organization, service') + parser.add_argument('--operator', action='store', help='a person, if the creator is an organization') + parser.add_argument('--warc-download-prefix', action='store', help='prefix for downloading content, automatically set for CC') + parser.add_argument('--index-glob', type=str, default=None, help='a glob pattern for read from multiple indices') + parser.add_argument('index_path', help='Path to CDX index file (local or remote, e.g. S3)') + + return parser \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index 2d0357f..af525d7 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,6 +3,7 @@ requests==2.25.1 warcio==1.7.4 +fsspec[s3] # used by Makefile pytest==6.2.4 diff --git a/setup.py b/setup.py index 3b30256..8d57c1d 100755 --- a/setup.py +++ b/setup.py @@ -10,18 +10,15 @@ ] # remember: keep requires synchronized with requirements.txt -requires = ['requests', 'warcio'] +requires = ['requests', 'warcio', 'fsspec[s3]'] test_requirements = ['pytest', 'pytest-cov'] package_requirements = ['twine', 'setuptools', 'setuptools-scm'] -warc_by_cdx_requirements = ['smart-open'] - extras_require = { 'test': test_requirements, # setup no longer tests, so make them an extra 'package': package_requirements, - 'warc_by_cdx': warc_by_cdx_requirements, # extra for the "warc_by_cdx command } scripts = ['scripts/cdx_size', 'scripts/cdx_iter'] diff --git a/tests/data/filter_cdx/whitelist_10_surts.txt b/tests/data/filter_cdx/whitelist_10_surts.txt new file mode 100644 index 0000000..0754ed2 --- /dev/null +++ b/tests/data/filter_cdx/whitelist_10_surts.txt @@ -0,0 +1,10 @@ +com,example)/ +edu,si)/ +com,youtube)/ +gov,archives)/ +gov,census)/ +com,741,onlinedegrees)/online_university_degree_program.html +com,72pines,star)/2007/06/25/%e6%8f%90%e5%8f%96%e5%85%ac%e7%a7%af%e9%87%91/trackback +fr,missiondefrance,bibliotheque)/ +fr,mnhn,biodiv)/fr/taxonomy +fr,mobilierpourchr,wip)/produit/t-837 diff --git a/tests/test_cli_filter_cdx.py b/tests/test_cli_filter_cdx.py new file mode 100644 index 0000000..92c9fab --- /dev/null +++ b/tests/test_cli_filter_cdx.py @@ -0,0 +1,49 @@ +from pathlib import Path + +from cdx_toolkit.cli import main +from cdx_toolkit.filter_cdx import resolve_paths + +fixture_path = Path(__file__).parent / "data/filter_cdx" + +def test_filter_cdx(tmpdir, caplog): + # check if expected number is reached + + index_path = "s3://commoncrawl/cc-index/collections" + index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" + whitelist_path = fixture_path / "whitelist_10_surts.txt" # matches on first domain and after 100k and 200k lines + + main(args=f"-v --limit 1140 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --input_glob {index_glob}".split()) + + assert "Limit reached" in caplog.text + + +def test_resolve_cdx_paths_from_cc_s3_to_local(tmpdir): + tmpdir = str(tmpdir) + base_path = "s3://commoncrawl/cc-index/collections" + glob_pattern = "/CC-MAIN-2016-30/indexes/*.gz" + + input_files, output_files = resolve_paths(base_path, glob_pattern, output_base_path=tmpdir) + + assert len(input_files) == len(output_files), "Input and output count must be the same" + assert len(input_files) == 300, "Invalid input count" + assert input_files[0] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00000.gz", "Invalid input file" + assert output_files[0] == tmpdir + "/CC-MAIN-2016-30/indexes/cdx-00000.gz", "Invalid output file" + assert input_files[-1] == base_path + '/CC-MAIN-2016-30/indexes/cdx-00299.gz' + + +def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): + output_base_path = "s3://some-other-bucket/filter-cdx" + base_path = "s3://commoncrawl/cc-index/collections" + glob_pattern = "/CC-MAIN-2016-30/indexes/cdx-000*.gz" + + input_files, output_files = resolve_paths(base_path, glob_pattern, output_base_path=output_base_path) + + assert len(input_files) == len(output_files), "Input and output count must be the same" + assert len(input_files) == 100, "Invalid input count" + assert input_files[0] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00000.gz", "Invalid input file" + assert output_files[0] == output_base_path + "/CC-MAIN-2016-30/indexes/cdx-00000.gz", "Invalid output file" + assert input_files[-1] == base_path + '/CC-MAIN-2016-30/indexes/cdx-00099.gz' + + +if __name__ == "__main__": + test_resolve_cdx_paths_from_cc_s3_to_local("./data/tmp") From 4dcf3a1e6ba13978c9649a07b48fd35ab37e0581 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 20 Aug 2025 17:17:25 +0000 Subject: [PATCH 03/23] Adding unit tests for warc_by_cdx and index resource record --- cdx_toolkit/filter_cdx/__init__.py | 41 +- cdx_toolkit/filter_cdx/args.py | 9 - cdx_toolkit/warcer_by_cdx/__init__.py | 171 ++- cdx_toolkit/warcer_by_cdx/args.py | 45 +- tests/data/warc_by_cdx/cdx-00187 | 1140 +++++++++++++++++ .../filtered_CC-MAIN-2024-30_cdx-00187.gz | Bin 0 -> 63684 bytes tests/test_cli_filter_cdx.py | 48 +- tests/test_cli_warc_by_cdx.py | 28 + 8 files changed, 1374 insertions(+), 108 deletions(-) create mode 100644 tests/data/warc_by_cdx/cdx-00187 create mode 100644 tests/data/warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.gz create mode 100644 tests/test_cli_warc_by_cdx.py diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py index 92152c7..da38e5b 100644 --- a/cdx_toolkit/filter_cdx/__init__.py +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -1,4 +1,3 @@ - import logging import os import time @@ -11,8 +10,9 @@ logger = logging.getLogger(__name__) + def run_filter_cdx(args, cmdline: str): - """Filter CDX index files based on a given SURT whitelist. + """Filter CDX index files based on a given SURT whitelist. - A index entry's SURT must start with one of the SURTs from the whitelist to be considered. - All other index entries are discarded. @@ -22,14 +22,20 @@ def run_filter_cdx(args, cmdline: str): # Start timing start_time = time.time() - + # Resolve input and output paths using glob pattern # This should support glob via S3 (e.g., to fetch the indices from s3://commoncrawl/cc-index/collections/* ...) - input_paths, output_paths = resolve_paths(input_base_path=args.input_base_path, input_glob=args.input_glob, output_base_path=args.output_base_path) + input_paths, output_paths = resolve_paths( + input_base_path=args.input_base_path, + input_glob=args.input_glob, + output_base_path=args.output_base_path, + ) validate_resolved_paths(output_paths, args.overwrite) - logger.info(f"Found {len(input_paths)} files matching pattern: {args.input_base_path}/{args.input_glob}") - + logger.info( + f"Found {len(input_paths)} files matching pattern: {args.input_base_path}/{args.input_glob}" + ) + # Load SURT prefixes from file (each line is a surt) surt_fs, surt_fs_path = fsspec.url_to_fs(args.surts_file) logger.info("Loading whitelist from %s", surt_fs_path) @@ -37,7 +43,7 @@ def run_filter_cdx(args, cmdline: str): if not surt_fs.exists(surt_fs_path): # Check that surts file exists logger.error(f"SURT file not found: {surt_fs_path}") sys.exit(1) - + with surt_fs.open(surt_fs_path, "rt") as input_f: include_surt_prefixes = [line.strip() for line in input_f.readlines()] @@ -68,7 +74,7 @@ def run_filter_cdx(args, cmdline: str): # Input/output from local or remote file system input_fs, input_fs_path = fsspec.url_to_fs(input_path) output_fs, output_fs_path = fsspec.url_to_fs(output_path) - + # Make sure output directory exists output_fs.makedirs(output_fs._parent(output_fs_path), exist_ok=True) @@ -96,7 +102,6 @@ def run_filter_cdx(args, cmdline: str): logger.info("Limit reached at %i", args.limit) break - if (i % log_every_n) == 0: logger.info(f"Lines completed: {i:,} (matched: {included_n:,})") @@ -114,12 +119,10 @@ def run_filter_cdx(args, cmdline: str): end_time = time.time() execution_time = end_time - start_time - logger.info( - f"Script execution time: {execution_time:.3f} seconds" - ) + logger.info(f"Script execution time: {execution_time:.3f} seconds") + - -def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str): +def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str): """Resolve input paths from glob pattern and generate corresponding output paths.""" # Use fsspec to handle local and remote file systems input_fs, input_fs_base_path = fsspec.url_to_fs(input_base_path) @@ -130,18 +133,18 @@ def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str) if not input_fs_file_paths: logger.error(f"No files found matching glob pattern: {input_full_glob}") sys.exit(1) - + # Generate corresponding output paths output_file_paths = [] input_file_paths = [] for input_path in input_fs_file_paths: # Get relative path from input_base_path without last slash - rel_path = input_path[len(input_fs_base_path)+1:] - + rel_path = input_path[len(input_fs_base_path) + 1 :] + # Create corresponding full input and output path output_file_paths.append(os.path.join(output_base_path, rel_path)) input_file_paths.append(os.path.join(input_base_path, rel_path)) - + return input_file_paths, output_file_paths @@ -160,5 +163,3 @@ def validate_resolved_paths(output_paths, overwrite): # Make sure directory exists output_fs.makedirs(output_fs._parent(output_path), exist_ok=True) - - diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py index 02e46fe..469eeca 100644 --- a/cdx_toolkit/filter_cdx/args.py +++ b/cdx_toolkit/filter_cdx/args.py @@ -1,14 +1,5 @@ -import os -import sys -import logging import argparse -import fsspec - - -logger = logging.getLogger(__name__) - - def add_filter_cdx_args(parser: argparse.ArgumentParser): """Add command line arguments.""" parser.add_argument( diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index f6a109e..333f853 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -1,103 +1,162 @@ - +from io import BytesIO import json import logging +from pathlib import Path import sys from typing import Iterable import fsspec + +from warcio import WARCWriter +from warcio.recordloader import ArcWarcRecord + import cdx_toolkit from cdx_toolkit.utils import get_version, setup -LOGGER = logging.getLogger(__name__) +logger = logging.getLogger(__name__) -def run_warcer_by_cdx(cmd, cmdline): +def run_warcer_by_cdx(args, cmdline): """Like warcer but fetches WARC records based on an CDX index file. - + Approach: - Iterate over CDX file to extract capture object (file, offset, length) - Fetch WARC record based on capture object - - Write to new WARC file with metadata + - Write to new WARC file with metadata including resource record with index. """ - cdx, kwargs = setup(cmd) + cdx, kwargs = setup(args) - ispartof = cmd.prefix - if cmd.subprefix: - ispartof += '-' + cmd.subprefix + ispartof = args.prefix + if args.subprefix: + ispartof += "-" + args.subprefix info = { - 'software': 'pypi_cdx_toolkit/'+get_version(), - 'isPartOf': ispartof, - 'description': 'warc extraction generated with: '+cmdline, - 'format': 'WARC file version 1.0', # todo: if we directly read a warc, have this match the warc - # TODO add information from the index file + "software": "pypi_cdx_toolkit/" + get_version(), + "isPartOf": ispartof, + "description": "warc extraction generated with: " + cmdline, + "format": "WARC file version 1.0", } - if cmd.creator: - info['creator'] = cmd.creator - if cmd.operator: - info['operator'] = cmd.operator + if args.creator: + info["creator"] = args.creator + if args.operator: + info["operator"] = args.operator kwargs_writer = {} - if 'size' in kwargs: - kwargs_writer['size'] = kwargs['size'] - del kwargs['size'] + if "size" in kwargs: + kwargs_writer["size"] = kwargs["size"] + del kwargs["size"] - writer = cdx_toolkit.warc.get_writer(cmd.prefix, cmd.subprefix, info, **kwargs_writer) + writer = cdx_toolkit.warc.get_writer( + args.prefix, args.subprefix, info, **kwargs_writer + ) - # TODO probably we should support multiple indices as input - - if cmd.index_glob is None: + # Prepare index paths + if args.index_glob is None: # Read from a single index - index_paths = [cmd.index_path] + index_paths = [args.index_path] else: # Fetch multiple indicies via glob - index_fs, index_fs_path = fsspec.url_to_fs(cmd.index_path) - index_paths = sorted(index_fs.glob(cmd.index_glob)) + index_fs, index_fs_path = fsspec.url_to_fs(args.index_path) + index_paths = sorted(index_fs.glob(args.index_glob)) - LOGGER.info('glob pattern found %i index files in %s', len(index_paths), index_fs_path) + logger.info( + "glob pattern found %i index files in %s", len(index_paths), index_fs_path + ) if not index_paths: - LOGGER.error('no index files found') + logger.error("no index files found") sys.exit(1) - + # Iterate over index files + records_n = 0 for index_path in index_paths: - LOGGER.info('filtering based on index from %s', index_path) + logger.info("filtering based on index from %s", index_path) + + # Read index completely (for the WARC resource record) + index = get_index_from_path(index_path) + + # Write index as record to WARC + # TODO at what position should the resource records be written? + writer.write_record(get_index_record(index, index_path)) # The index file holds all the information to download specific objects (file, offset, length etc.) - for obj in get_caputure_objects_from_index_file(index_path=index_path, warc_download_prefix=cmd.warc_download_prefix): - url = obj['url'] + for obj in get_caputure_objects_from_index( + index=index, warc_download_prefix=cdx.warc_download_prefix + ): + url = obj["url"] + timestamp = obj["timestamp"] - timestamp = obj['timestamp'] try: record = obj.fetch_warc_record() except RuntimeError: # pragma: no cover - LOGGER.warning('skipping capture for RuntimeError 404: %s %s', url, timestamp) + logger.warning( + "skipping capture for RuntimeError 404: %s %s", url, timestamp + ) continue if obj.is_revisit(): - LOGGER.warning('revisit record being resolved for url %s %s', url, timestamp) + logger.warning( + "revisit record being resolved for url %s %s", url, timestamp + ) writer.write_record(record) + records_n += 1 + + if args.limit > 0 and records_n >= args.limit: + logger.info("Limit reached at %i", args.limit) + break + + if args.limit > 0 and records_n >= args.limit: + # stop index loop + break - LOGGER.info('filtering completed (index: %s)', index_path) + logger.info("Filtering completed (index file: %s)", index_path) -def get_caputure_objects_from_index_file(index_path: str, warc_download_prefix=None) -> Iterable[cdx_toolkit.CaptureObject]: - """Read CDX index file and generate CaptureObject objects.""" + logger.info("WARC records extracted: %i", records_n) + + +def get_index_from_path(index_path: str | Path) -> str: + """Fetch (and decompress) index content as string from local or remote path.""" index_fs, index_fs_path = fsspec.url_to_fs(index_path) - - with index_fs.open(index_fs_path) as f: - for line in enumerate(f): - cols = line.split(" ", maxsplit=2) - - if len(cols) == 3: - # TODO can there be a different format? - # surt, timestamp, json_data = cols - data = json.loads(cols[2]) - data["timestamp"] = cols[1] - else: - raise ValueError(f"Cannot parse line: {line}") - - yield cdx_toolkit.CaptureObject( - data=data, wb=None, warc_download_prefix=warc_download_prefix - ) + + compression = "gzip" if index_fs_path.endswith(".gz") else None + + with index_fs.open(index_fs_path, "rt", compression=compression) as f: + return f.read() + + +def get_index_record( + index: str, index_path: str, encoding: str = "utf-8" +) -> ArcWarcRecord: + """Build WARC resource record for index.""" + return WARCWriter(None).create_warc_record( + uri=index_path, # TODO this could be a local / internal path + record_type="resource", + payload=BytesIO(index.encode(encoding)), + http_headers=None, + warc_content_type="application/cdx", + warc_headers_dict=None, # TODO should we add some other metadata headers? + ) + + +def get_caputure_objects_from_index( + index: str, warc_download_prefix=None, limit: int = 0 +) -> Iterable[cdx_toolkit.CaptureObject]: + """Read CDX index and generate CaptureObject objects.""" + for i, line in enumerate(index.splitlines()): + cols = line.split(" ", maxsplit=2) + + if len(cols) == 3: + # TODO can there be a different format? + # surt, timestamp, json_data = cols + data = json.loads(cols[2]) + data["timestamp"] = cols[1] + else: + raise ValueError(f"Cannot parse line: {line}") + + yield cdx_toolkit.CaptureObject( + data=data, wb=None, warc_download_prefix=warc_download_prefix + ) + + if limit > 0 and i >= limit: + break diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index f31ac2f..7d40ea6 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -8,13 +8,40 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): - parser.add_argument('--prefix', default='TEST', help='prefix for the warc filename') - parser.add_argument('--subprefix', type=str, default=None, help='subprefix for the warc filename, default None') - parser.add_argument('--size', type=int, default=1000000000, help='target for the warc filesize in bytes') - parser.add_argument('--creator', action='store', help='creator of the warc: person, organization, service') - parser.add_argument('--operator', action='store', help='a person, if the creator is an organization') - parser.add_argument('--warc-download-prefix', action='store', help='prefix for downloading content, automatically set for CC') - parser.add_argument('--index-glob', type=str, default=None, help='a glob pattern for read from multiple indices') - parser.add_argument('index_path', help='Path to CDX index file (local or remote, e.g. S3)') + parser.add_argument("--prefix", default="TEST", help="prefix for the warc filename") + parser.add_argument( + "--subprefix", + type=str, + default=None, + help="subprefix for the warc filename, default None", + ) + parser.add_argument( + "--size", + type=int, + default=1000000000, + help="target for the warc filesize in bytes", + ) + parser.add_argument( + "--creator", + action="store", + help="creator of the warc: person, organization, service", + ) + parser.add_argument( + "--operator", action="store", help="a person, if the creator is an organization" + ) + parser.add_argument( + "--warc-download-prefix", + action="store", + help="prefix for downloading content, automatically set for CC", + ) + parser.add_argument( + "--index-glob", + type=str, + default=None, + help="a glob pattern for read from multiple indices", + ) + parser.add_argument( + "index_path", help="Path to CDX index file (local or remote, e.g. S3)" + ) - return parser \ No newline at end of file + return parser diff --git a/tests/data/warc_by_cdx/cdx-00187 b/tests/data/warc_by_cdx/cdx-00187 new file mode 100644 index 0000000..70ecc69 --- /dev/null +++ b/tests/data/warc_by_cdx/cdx-00187 @@ -0,0 +1,1140 @@ +fr,missiondefrance,bibliotheque)/index.php?id=319&lvl=bulletin_display 20240716153155 {"url": "https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319", "mime": "text/html", "mime-detected": "application/xhtml+xml", "status": "200", "digest": "D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP", "length": "9754", "offset": "111440525", "filename": "crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz", "charset": "UTF-8", "languages": "fra"} +fr,missiondefrance,bibliotheque)/index.php?id=3195&lvl=author_see 20240718133156 {"url": "http://bibliotheque.missiondefrance.fr/index.php?lvl=author_see&id=3195", "mime": 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zIc!iImO(gXoFp0IUYP=S@XChzv2I@uT(estb$Z>{mAVctY|g%b^(p#+mIH`&jXwm| z_HYeePMTTy!x7d)0#byktPv#-nufR}^mOYYD^4o9aAw~)e$6c4JZGoZyx{T&!{1*n z#{#~e39^APxFGrB__D6?hLCIz7cC?nhLC!_6u9Ul7jsr)6muDnF5@}}i49kjpok&{ z>;s&k`YB^@A@Ilh3dbbq3DupUg;sms z>Q_RRbpTujqeBKBJ40|f6?_6NW&kc3j8z^CVDOV_n5Lw5yEyC9xEE1PV^FT(S}Bv` z`&|yQzcYlEWehIIdK4NijKWvI5uH7H(a5FfKbCE_`A| znLq~|;0z%!<_rP)onQs3XUPUvz@@ISJzQ7_3<#cxmkJn!aZ&IR%cLb@pm>aQ>tc8% zAV?^MHolP+&BD%eLQh+lO(3)J=aVOu&H{S?~zB zY;$mZ(Iv6$tKc#a`Sl|g5c{-Ax*;g!*hV<3;{u?7WL=B(A`@MoMi60@cpPF~#?oN; zMH&o|b%is8Ceq+`=-eR=r8|I7#SJrRVUJ3;>uP)`>Se#m^|tZFHAVsm=iJ3 z9WG^*^cAk~+*I7pTp_%&oZBu9$y~L((9OwNRoE>Ds}Jyiv=}jC_N0Q_$IX1_n%N6= z4Fm1QtO+|gk8znsr3}kC?|Pr87@BV&gZd0fziSB+i}0|nh` z3ZjssqMrMjBv~BSz92{h{an{26?!Y5(pAaHv6)Q~Il#8eCB;WEu=bE#L{DPHNG0`(C>#12TT%yok)hL7Na(7GbA zqS(M#XPkDl85 Date: Fri, 22 Aug 2025 09:53:41 +0000 Subject: [PATCH 04/23] Adding more unit tests --- cdx_toolkit/filter_cdx/args.py | 8 +- cdx_toolkit/warcer_by_cdx/__init__.py | 15 +- tests/test_cli_warc_by_cdx.py | 28 ---- ...t_cli_filter_cdx.py => test_filter_cdx.py} | 60 +++++++- tests/test_warc_by_cdx.py | 136 ++++++++++++++++++ 5 files changed, 205 insertions(+), 42 deletions(-) delete mode 100644 tests/test_cli_warc_by_cdx.py rename tests/{test_cli_filter_cdx.py => test_filter_cdx.py} (52%) create mode 100644 tests/test_warc_by_cdx.py diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py index 469eeca..02eddb3 100644 --- a/cdx_toolkit/filter_cdx/args.py +++ b/cdx_toolkit/filter_cdx/args.py @@ -1,10 +1,11 @@ import argparse + def add_filter_cdx_args(parser: argparse.ArgumentParser): """Add command line arguments.""" parser.add_argument( "input_base_path", - help="Base directory path or remote URL for one or multiple input files (e.g., URL to S3 bucket)" + help="Base directory path or remote URL for one or multiple input files (e.g., URL to S3 bucket)", ) parser.add_argument( "surts_file", @@ -12,11 +13,11 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): ) parser.add_argument( "output_base_path", - help="Base directory path for output files (directory structure will be replicated from input_base_path)" + help="Base directory path for output files (directory structure will be replicated from input_base_path)", ) parser.add_argument( "--input_glob", - help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')" + help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')", ) parser.add_argument( "--matching_approach", @@ -32,4 +33,3 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): ) return parser - diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index 333f853..dc20273 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -19,12 +19,15 @@ def run_warcer_by_cdx(args, cmdline): - """Like warcer but fetches WARC records based on an CDX index file. + """Like warcer but fetches WARC records based on one or more CDX index files. + + The CDX files can be filtered using the `filter_cdx` commands based a given URL/SURT list. Approach: - - Iterate over CDX file to extract capture object (file, offset, length) + - Iterate over one or more CDX files to extract capture object (file, offset, length) - Fetch WARC record based on capture object - Write to new WARC file with metadata including resource record with index. + - The CDX resource record is written to the WARC directly before for response records that matches to the CDX. """ cdx, kwargs = setup(args) @@ -35,7 +38,7 @@ def run_warcer_by_cdx(args, cmdline): info = { "software": "pypi_cdx_toolkit/" + get_version(), "isPartOf": ispartof, - "description": "warc extraction generated with: " + cmdline, + "description": "warc extraction based on CDX generated with: " + cmdline, "format": "WARC file version 1.0", } if args.creator: @@ -82,7 +85,7 @@ def run_warcer_by_cdx(args, cmdline): writer.write_record(get_index_record(index, index_path)) # The index file holds all the information to download specific objects (file, offset, length etc.) - for obj in get_caputure_objects_from_index( + for obj in generate_caputure_objects_from_index( index=index, warc_download_prefix=cdx.warc_download_prefix ): url = obj["url"] @@ -139,11 +142,11 @@ def get_index_record( ) -def get_caputure_objects_from_index( +def generate_caputure_objects_from_index( index: str, warc_download_prefix=None, limit: int = 0 ) -> Iterable[cdx_toolkit.CaptureObject]: """Read CDX index and generate CaptureObject objects.""" - for i, line in enumerate(index.splitlines()): + for i, line in enumerate(index.splitlines(), 1): cols = line.split(" ", maxsplit=2) if len(cols) == 3: diff --git a/tests/test_cli_warc_by_cdx.py b/tests/test_cli_warc_by_cdx.py deleted file mode 100644 index 593ac12..0000000 --- a/tests/test_cli_warc_by_cdx.py +++ /dev/null @@ -1,28 +0,0 @@ -from pathlib import Path -from cdx_toolkit.cli import main -from cdx_toolkit.warcer_by_cdx import ( - get_caputure_objects_from_index, - get_index_from_path, -) - -fixture_path = Path(__file__).parent / "data/warc_by_cdx" - - -def test_warc_by_cdx(tmpdir, caplog): - # test cli and check log output - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" - - main( - args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 10 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_warc_by_index --creator creator --operator bob""".split() - ) - - assert "Limit reached" in caplog.text - - -def test_get_caputure_objects_from_index(): - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" - - for obj in get_caputure_objects_from_index(get_index_from_path(index_path)): - break - - assert obj.data["length"] == "9754" diff --git a/tests/test_cli_filter_cdx.py b/tests/test_filter_cdx.py similarity index 52% rename from tests/test_cli_filter_cdx.py rename to tests/test_filter_cdx.py index 6beec00..d3e3377 100644 --- a/tests/test_cli_filter_cdx.py +++ b/tests/test_filter_cdx.py @@ -1,12 +1,12 @@ from pathlib import Path from cdx_toolkit.cli import main -from cdx_toolkit.filter_cdx import resolve_paths +from cdx_toolkit.filter_cdx import resolve_paths, validate_resolved_paths fixture_path = Path(__file__).parent / "data/filter_cdx" -def test_filter_cdx(tmpdir, caplog): +def test_cli_filter_cdx(tmpdir, caplog): # check if expected number is reached index_path = "s3://commoncrawl/cc-index/collections" index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" @@ -65,5 +65,57 @@ def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): assert input_files[-1] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00099.gz" -if __name__ == "__main__": - test_resolve_cdx_paths_from_cc_s3_to_local("./data/tmp") +def test_filter_cdx_nonexistent_surt_file_exits(tmpdir, caplog): + import pytest + + index_path = "s3://commoncrawl/cc-index/collections" + index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" + nonexistent_surt_file = str(tmpdir / "nonexistent_surts.txt") + + # Test that the command exits when SURT file doesn't exist + with pytest.raises(SystemExit) as exc_info: + main( + args=f"-v --limit 1140 filter_cdx {index_path} {nonexistent_surt_file} {tmpdir} --input_glob {index_glob}".split() + ) + + assert exc_info.value.code == 1 + assert f"SURT file not found: {nonexistent_surt_file}" in caplog.text + + +def test_resolve_paths_no_files_found_exits(tmpdir, caplog): + import pytest + + # Test that resolve_paths exits when no files match the glob pattern + with pytest.raises(SystemExit) as exc_info: + resolve_paths( + input_base_path=str(tmpdir), + input_glob="/nonexistent-pattern-*.gz", + output_base_path=str(tmpdir) + ) + + assert exc_info.value.code == 1 + assert "No files found matching glob pattern:" in caplog.text + + +def test_validate_resolved_paths_existing_file_exits(tmpdir, caplog): + import pytest + + # Create an existing output file + existing_file = tmpdir / "existing_output.txt" + existing_file.write_text("existing content", encoding="utf-8") + + output_paths = [str(existing_file)] + + # Test that validate_resolved_paths exits when output file exists and overwrite=False + with pytest.raises(SystemExit) as exc_info: + validate_resolved_paths(output_paths, overwrite=False) + + assert exc_info.value.code == 1 + assert f"Output file already exists: {str(existing_file)}" in caplog.text + assert "Use --overwrite to overwrite existing files" in caplog.text + + +def test_matcher_approaches(): + # TODO + # a = + pass \ No newline at end of file diff --git a/tests/test_warc_by_cdx.py b/tests/test_warc_by_cdx.py new file mode 100644 index 0000000..b405809 --- /dev/null +++ b/tests/test_warc_by_cdx.py @@ -0,0 +1,136 @@ +import os +from pathlib import Path +from cdx_toolkit.cli import main +from cdx_toolkit.warcer_by_cdx import ( + generate_caputure_objects_from_index, + get_index_from_path, +) +import pytest +from warcio.archiveiterator import ArchiveIterator + + +fixture_path = Path(__file__).parent / "data/warc_by_cdx" + + +def test_cli_warc_by_cdx(tmpdir, caplog): + # test cli and check output + index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + + main( + args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 10 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_warc_by_index --creator foo --operator bob""".split() + ) + + # Check log + assert "Limit reached" in caplog.text + + # Validate extracted WARC + warc_path = os.path.join(tmpdir, "TEST_warc_by_index-000000.extracted.warc.gz") + resource_record = None + info_record = None + response_records = [] + + with open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode("utf-8") + + if record.rec_type == 'response': + response_records.append(record) + + if record.rec_type == 'resource': + resource_record = record + + assert len(response_records) == 10 + assert resource_record is not None + assert resource_record.length == 568010 + + assert info_record is not None + assert "operator: bob" in info_record + + +def test_get_caputure_objects_from_index(): + index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + + for obj in generate_caputure_objects_from_index(get_index_from_path(index_path)): + break + + assert obj.data["length"] == "9754" + + +def test_warc_by_cdx_no_index_files_found_exits(tmpdir, caplog): + # Test that warc_by_cdx exits when no index files match the glob pattern + with pytest.raises(SystemExit) as exc_info: + main( + args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ warc_by_cdx {str(tmpdir)} --prefix {str(tmpdir)}/TEST --index-glob "/nonexistent-pattern-*.gz" """.split() + ) + + assert exc_info.value.code == 1 + assert "no index files found" in caplog.text + + +def test_generate_caputure_objects_invalid_cdx_line(): + # Test invalid CDX line parsing (line with wrong number of columns) + with pytest.raises(ValueError): + list(generate_caputure_objects_from_index("invalid-format")) + + +def test_generate_caputure_objects_with_limit(): + # Test limit functionality in get_caputure_objects_from_index + index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + index_content = get_index_from_path(index_path) + + # Count objects with limit=2 + objects = list(generate_caputure_objects_from_index(index_content, limit=2)) + + # Should stop after 2 objects + assert len(objects) == 2 + + +def test_warc_by_cdx_subprefix_and_metadata(tmpdir): + # Test subprefix functionality and creator/operator metadata + index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + + main( + args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 1 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST --subprefix SUB --creator test_creator --operator test_operator""".split() + ) + + # Check that WARC file was created with subprefix + warc_path = os.path.join(tmpdir, "TEST-SUB-000000.extracted.warc.gz") + assert os.path.exists(warc_path) + + # Validate metadata in warcinfo record + info_record = None + with open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode("utf-8") + break + + assert info_record is not None + assert "creator: test_creator" in info_record + assert "operator: test_operator" in info_record + + +def test_warc_by_cdx_without_creator_operator(tmpdir): + # Test that creator and operator are optional (lines 44-47) + index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + + main( + args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 1 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_NO_META""".split() + ) + + # Check that WARC file was created + warc_path = os.path.join(tmpdir, "TEST_NO_META-000000.extracted.warc.gz") + assert os.path.exists(warc_path) + + # Validate that creator/operator are not in warcinfo record + info_record = None + with open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode("utf-8") + break + + assert info_record is not None + assert "creator:" not in info_record + assert "operator:" not in info_record From dd1e4c6e51a7718c71cfbfb9ed69e5da9e630f51 Mon Sep 17 00:00:00 2001 From: malteos Date: Fri, 22 Aug 2025 12:09:53 +0000 Subject: [PATCH 05/23] Added unit tests for matcher --- cdx_toolkit/filter_cdx/__init__.py | 28 +- cdx_toolkit/filter_cdx/args.py | 17 +- cdx_toolkit/filter_cdx/matcher.py | 25 +- cdx_toolkit/warcer_by_cdx/args.py | 18 +- requirements.txt | 1 + setup.py | 2 +- tests/data/filter_cdx/whitelist_10_urls.txt | 10 + tests/test_filter_cdx.py | 34 ++- tests/test_matcher.py | 318 ++++++++++++++++++++ 9 files changed, 409 insertions(+), 44 deletions(-) create mode 100644 tests/data/filter_cdx/whitelist_10_urls.txt create mode 100644 tests/test_matcher.py diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py index da38e5b..6df2556 100644 --- a/cdx_toolkit/filter_cdx/__init__.py +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -4,6 +4,7 @@ import sys import fsspec +from surt import surt from cdx_toolkit.filter_cdx.matcher import TupleMatcher, TrieMatcher @@ -12,8 +13,9 @@ def run_filter_cdx(args, cmdline: str): - """Filter CDX index files based on a given SURT whitelist. + """Filter CDX index files based on a given URL or SURT whitelist. + - If a URL filter is provided, it is converted to a SURT filter. - A index entry's SURT must start with one of the SURTs from the whitelist to be considered. - All other index entries are discarded. - All input/output paths can be local or remote paths (S3, ...) and compressed (*.gz). @@ -36,16 +38,24 @@ def run_filter_cdx(args, cmdline: str): f"Found {len(input_paths)} files matching pattern: {args.input_base_path}/{args.input_glob}" ) - # Load SURT prefixes from file (each line is a surt) - surt_fs, surt_fs_path = fsspec.url_to_fs(args.surts_file) - logger.info("Loading whitelist from %s", surt_fs_path) + # Load URL or SURT prefixes from file (each line is a surt) + filter_fs, filter_fs_path = fsspec.url_to_fs(args.filter_file) + logger.info("Loading whitelist from %s", filter_fs_path) - if not surt_fs.exists(surt_fs_path): # Check that surts file exists - logger.error(f"SURT file not found: {surt_fs_path}") + if not filter_fs.exists(filter_fs_path): # Check that surts file exists + logger.error(f"Filter file not found: {filter_fs_path}") sys.exit(1) - with surt_fs.open(surt_fs_path, "rt") as input_f: - include_surt_prefixes = [line.strip() for line in input_f.readlines()] + with filter_fs.open(filter_fs_path, "rt") as input_f: + include_prefixes = [line.strip() for line in input_f.readlines()] + + # Convert to SURT if filter file contains URLs + if args.filter_type == "url": + logger.info("Converting urls to surts ...") + include_surt_prefixes = [surt(url) for url in include_prefixes] + else: + # Filter is already given as surts + include_surt_prefixes = include_prefixes # Create matcher based on selected approach matcher_classes = { @@ -56,7 +66,7 @@ def run_filter_cdx(args, cmdline: str): matcher = matcher_classes[args.matching_approach](include_surt_prefixes) logger.info( - f"Loaded {len(include_surt_prefixes):,} surts using {args.matching_approach} approach" + f"Loaded {len(include_surt_prefixes):,} filter entries using {args.matching_approach} approach" ) # Process each input/output file pair diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py index 02eddb3..40bb79e 100644 --- a/cdx_toolkit/filter_cdx/args.py +++ b/cdx_toolkit/filter_cdx/args.py @@ -5,27 +5,32 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): """Add command line arguments.""" parser.add_argument( "input_base_path", - help="Base directory path or remote URL for one or multiple input files (e.g., URL to S3 bucket)", + help="Base directory path on the local file system or remote URL for one or multiple CDX files (e.g., URL to S3 bucket)", ) parser.add_argument( - "surts_file", - help="Path to file containing SURT prefixes to match (one per line)", + "filter_file", + help="Path to file containing URL or SURT prefixes to filter for (one per line)", ) parser.add_argument( "output_base_path", help="Base directory path for output files (directory structure will be replicated from input_base_path)", ) parser.add_argument( - "--input_glob", + "--filter-type", + type=str, + default="url", + help="Type of filter entries (options: `url` or `surt`, defaults to `url`)", + ) + parser.add_argument( + "--input-glob", help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')", ) parser.add_argument( - "--matching_approach", + "--matching-approach", choices=["trie", "tuple"], default="trie", help="Matching approach to use (default: trie)", ) - parser.add_argument( "--overwrite", action="store_true", diff --git a/cdx_toolkit/filter_cdx/matcher.py b/cdx_toolkit/filter_cdx/matcher.py index 75c8af0..64899d1 100644 --- a/cdx_toolkit/filter_cdx/matcher.py +++ b/cdx_toolkit/filter_cdx/matcher.py @@ -17,6 +17,23 @@ def matches(self, text: str) -> bool: """Check if text starts with any of the prefixes.""" pass + @staticmethod + def validate_prefixes(prefixes: tuple[str] | list[str]) -> tuple[str]: + valid_prefixes = [] + + for prefix in prefixes: + if prefix is None or not isinstance(prefix, str): + raise ValueError("Prefix must be a string and not none.") + + # remove white spaces + prefix = prefix.strip() + + if len(prefix) == 0: + raise ValueError("Empty prefixes are not allowed") + + valid_prefixes.append(prefix) + + return tuple(valid_prefixes) class TrieNode: def __init__(self): @@ -29,9 +46,9 @@ class TrieMatcher(Matcher): def __init__(self, prefixes: tuple[str] | list[str]): logger.info(f"Building trie matcher based on {len(prefixes):,} inputs") - self.root = self._build_trie(prefixes) + self.root = self._build_trie(self.validate_prefixes(prefixes)) - def _build_trie(self, prefixes: tuple[str] | list[str]): + def _build_trie(self, prefixes: tuple[str]): """Build a trie from a collection of prefixes.""" root = TrieNode() for prefix in prefixes: @@ -56,11 +73,11 @@ def matches(self, text: str) -> bool: class TupleMatcher(Matcher): - """Tuple-based matching approach using startswith.""" + """Tuple-based matching approach using the built-in method `str.startswith`.""" def __init__(self, prefixes: tuple[str] | list[str]): logger.info(f"Building tuple matcher based on {len(prefixes):,} inputs") - self.prefixes_tuple = tuple(prefixes) + self.prefixes_tuple = self.validate_prefixes(prefixes) def matches(self, text: str) -> bool: """Check if text starts with any prefix in the tuple.""" diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index 7d40ea6..3c9368f 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -8,6 +8,15 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): + parser.add_argument( + "index_path", help="Path to CDX index file (local or remote, e.g. S3)" + ) + parser.add_argument( + "--index-glob", + type=str, + default=None, + help="a glob pattern for read from multiple indices", + ) parser.add_argument("--prefix", default="TEST", help="prefix for the warc filename") parser.add_argument( "--subprefix", @@ -34,14 +43,5 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): action="store", help="prefix for downloading content, automatically set for CC", ) - parser.add_argument( - "--index-glob", - type=str, - default=None, - help="a glob pattern for read from multiple indices", - ) - parser.add_argument( - "index_path", help="Path to CDX index file (local or remote, e.g. S3)" - ) return parser diff --git a/requirements.txt b/requirements.txt index af525d7..97d61be 100644 --- a/requirements.txt +++ b/requirements.txt @@ -4,6 +4,7 @@ requests==2.25.1 warcio==1.7.4 fsspec[s3] +surt>=0.3.1 # used by Makefile pytest==6.2.4 diff --git a/setup.py b/setup.py index 8d57c1d..a32e4d5 100755 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ ] # remember: keep requires synchronized with requirements.txt -requires = ['requests', 'warcio', 'fsspec[s3]'] +requires = ['requests', 'warcio', 'fsspec[s3]', 'surt'] test_requirements = ['pytest', 'pytest-cov'] diff --git a/tests/data/filter_cdx/whitelist_10_urls.txt b/tests/data/filter_cdx/whitelist_10_urls.txt new file mode 100644 index 0000000..475f73d --- /dev/null +++ b/tests/data/filter_cdx/whitelist_10_urls.txt @@ -0,0 +1,10 @@ +example.com +si.edu +youtube.com +archive.gov +census.gov +onlinedegrees.741.com/online_university_degree_program.html +star.72pines.com/2007/06/25/%e6%8f%90%e5%8f%96%e5%85%ac%e7%a7%af%e9%87%91/trackback +bibliotheque.missiondefrance.fr +biodiv.mnhn.fr/fr/taxonomy +wip.mobilierpourchr.fr/produit/t-837 diff --git a/tests/test_filter_cdx.py b/tests/test_filter_cdx.py index d3e3377..86fcc38 100644 --- a/tests/test_filter_cdx.py +++ b/tests/test_filter_cdx.py @@ -1,3 +1,4 @@ +import pytest from pathlib import Path from cdx_toolkit.cli import main @@ -6,7 +7,7 @@ fixture_path = Path(__file__).parent / "data/filter_cdx" -def test_cli_filter_cdx(tmpdir, caplog): +def test_cli_filter_cdx_with_surts(tmpdir, caplog): # check if expected number is reached index_path = "s3://commoncrawl/cc-index/collections" index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" @@ -15,11 +16,25 @@ def test_cli_filter_cdx(tmpdir, caplog): ) # matches on first domain and after 100k and 200k lines main( - args=f"-v --limit 1140 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --input_glob {index_glob}".split() + args=f"-v --limit 1140 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --filter-type surt --input-glob {index_glob}".split() ) assert "Limit reached" in caplog.text + +def test_cli_filter_cdx_with_urls(tmpdir, caplog): + # check if expected number is reached + index_path = "s3://commoncrawl/cc-index/collections" + index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" + whitelist_path = ( + fixture_path / "whitelist_10_urls.txt" + ) # matches on first domain and after 100k and 200k lines + main( + args=f"-v --limit 1140 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --filter-type url --input-glob {index_glob}".split() + ) + + assert "Limit reached" in caplog.text + def test_resolve_cdx_paths_from_cc_s3_to_local(tmpdir): tmpdir = str(tmpdir) @@ -66,8 +81,6 @@ def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): def test_filter_cdx_nonexistent_surt_file_exits(tmpdir, caplog): - import pytest - index_path = "s3://commoncrawl/cc-index/collections" index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" nonexistent_surt_file = str(tmpdir / "nonexistent_surts.txt") @@ -75,16 +88,14 @@ def test_filter_cdx_nonexistent_surt_file_exits(tmpdir, caplog): # Test that the command exits when SURT file doesn't exist with pytest.raises(SystemExit) as exc_info: main( - args=f"-v --limit 1140 filter_cdx {index_path} {nonexistent_surt_file} {tmpdir} --input_glob {index_glob}".split() + args=f"-v --limit 1140 filter_cdx {index_path} {nonexistent_surt_file} {tmpdir} --input-glob {index_glob}".split() ) assert exc_info.value.code == 1 - assert f"SURT file not found: {nonexistent_surt_file}" in caplog.text + assert f"Filter file not found: {nonexistent_surt_file}" in caplog.text def test_resolve_paths_no_files_found_exits(tmpdir, caplog): - import pytest - # Test that resolve_paths exits when no files match the glob pattern with pytest.raises(SystemExit) as exc_info: resolve_paths( @@ -98,8 +109,6 @@ def test_resolve_paths_no_files_found_exits(tmpdir, caplog): def test_validate_resolved_paths_existing_file_exits(tmpdir, caplog): - import pytest - # Create an existing output file existing_file = tmpdir / "existing_output.txt" existing_file.write_text("existing content", encoding="utf-8") @@ -114,8 +123,3 @@ def test_validate_resolved_paths_existing_file_exits(tmpdir, caplog): assert f"Output file already exists: {str(existing_file)}" in caplog.text assert "Use --overwrite to overwrite existing files" in caplog.text - -def test_matcher_approaches(): - # TODO - # a = - pass \ No newline at end of file diff --git a/tests/test_matcher.py b/tests/test_matcher.py new file mode 100644 index 0000000..527467c --- /dev/null +++ b/tests/test_matcher.py @@ -0,0 +1,318 @@ +import pytest +from cdx_toolkit.filter_cdx.matcher import TupleMatcher, TrieMatcher + + +@pytest.mark.parametrize( + "prefixes,test_strings,expected_results", + [ + # Basic functionality + ( + ["http://", "https://"], + ["http://example.com", "https://example.com", "ftp://example.com"], + [True, True, False], + ), + # Empty prefix list + ([], ["any string", "", "test"], [False, False, False]), + # Single character prefixes + ( + ["a", "b", "c"], + ["apple", "banana", "cherry", "dog", ""], + [True, True, True, False, False], + ), + # Overlapping prefixes + ( + ["test", "testing", "te"], + ["test", "testing", "tea", "other"], + [True, True, True, False], + ), + # Unicode characters + ( + ["café", "naïve", "résumé"], + ["café au lait", "naïve person", "résumé.pdf", "regular text"], + [True, True, True, False], + ), + # Special characters + ( + ["[test]", ".*", "\\n"], + ["[test] case", ".*regex", "\\newline", "normal"], + [True, True, True, False], + ), + # Case sensitivity + ( + ["HTTP", "Https"], + ["HTTP://example.com", "https://example.com", "HTTPS://EXAMPLE.COM"], + [True, False, True], + ), + # Very long prefixes + ( + ["a" * 1000], + ["a" * 1000 + "suffix", "a" * 999, "b" * 1000], + [True, False, False], + ), + # Duplicate prefixes + ( + ["test", "test", "demo"], + ["testing", "demo version", "other"], + [True, True, False], + ), + # Prefixes that are substrings of each other + ( + ["ab", "abc", "abcd"], + ["ab", "abc", "abcd", "abcde", "a"], + [True, True, True, True, False], + ), + # Numbers and mixed content + ( + ["123", "4.56"], + ["123test", "4.56789", "789", "test123"], + [True, True, False, False], + ), + # Whitespace handling (note: whitespace is stripped from prefixes, so " test" becomes "test") + ( + [" test", "\tindent", "\nline"], + ["test case", "indented", "line break", " test case", "nowhitespace"], + [True, True, True, False, False], + ), + ], +) +def test_matcher_approaches(prefixes, test_strings, expected_results): + """Test that TupleMatcher and TrieMatcher produce identical results.""" + tuple_matcher = TupleMatcher(prefixes) + trie_matcher = TrieMatcher(prefixes) + + for test_string, expected_result in zip(test_strings, expected_results): + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + + # Both matchers should agree with each other + assert tuple_result == trie_result, ( + f"TupleMatcher({tuple_result}) != TrieMatcher({trie_result}) " + f"for prefixes {prefixes} and string '{test_string}'" + ) + + # Both should match the expected result + assert tuple_result == expected_result, ( + f"Expected {expected_result}, got {tuple_result} " + f"for prefixes {prefixes} and string '{test_string}'" + ) + + +@pytest.mark.parametrize( + "invalid_prefixes,expected_error", + [ + # Empty string prefixes + ([""], "Empty prefixes are not allowed"), + # Whitespace-only prefixes (should be stripped to empty and raise error) + ([" "], "Empty prefixes are not allowed"), + (["\t\n "], "Empty prefixes are not allowed"), + # None values + ([None], "Prefix must be a string and not none"), + (["test", None, "demo"], "Prefix must be a string and not none"), + # Non-string types + ([123], "Prefix must be a string and not none"), + (["test", 456, "demo"], "Prefix must be a string and not none"), + ([[], {}, set()], "Prefix must be a string and not none"), + ], +) +def test_prefix_validation_errors(invalid_prefixes, expected_error): + """Test that invalid prefixes raise appropriate ValueErrors.""" + + with pytest.raises(ValueError, match=expected_error): + TupleMatcher(invalid_prefixes) + + with pytest.raises(ValueError, match=expected_error): + TrieMatcher(invalid_prefixes) + + +@pytest.mark.parametrize( + "test_string,expected", + [ + ("test", True), + ("testing", True), + ("demo", True), + ("demonstration", True), + ("example", True), + ("examples", True), + (" test", False), # Leading whitespace in test string shouldn't match + ("other", False), + ], +) +def test_whitespace_stripping(test_string, expected): + """Test that whitespace is properly stripped from prefixes.""" + + # Prefixes with leading/trailing whitespace should be stripped + prefixes_with_whitespace = [" test ", "\tdemo\n", " example "] + + tuple_matcher = TupleMatcher(prefixes_with_whitespace) + trie_matcher = TrieMatcher(prefixes_with_whitespace) + + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + + assert tuple_result == trie_result == expected, ( + f"Whitespace stripping test failed for '{test_string}': " + f"expected {expected}, got Tuple({tuple_result}), Trie({trie_result})" + ) + + +@pytest.mark.parametrize("test_string", ["anything", "", "test", "a", "123"]) +def test_empty_prefix_list(test_string): + """Test with empty prefix list - should never match anything.""" + empty_prefixes = [] + + tuple_matcher = TupleMatcher(empty_prefixes) + trie_matcher = TrieMatcher(empty_prefixes) + + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + + # Both should return False for empty prefix list + assert tuple_result == trie_result == False, ( + f"Both matchers should return False for '{test_string}' with empty prefixes, " + f"got Tuple({tuple_result}), Trie({trie_result})" + ) + + +def test_empty_string_against_prefixes(): + """Test matching empty strings against non-empty prefixes.""" + non_empty_prefixes = ["test", "demo", "example"] + empty_test_string = "" + + tuple_matcher = TupleMatcher(non_empty_prefixes) + trie_matcher = TrieMatcher(non_empty_prefixes) + + tuple_result = tuple_matcher.matches(empty_test_string) + trie_result = trie_matcher.matches(empty_test_string) + + # Both should return False when testing empty string against non-empty prefixes + assert tuple_result == trie_result == False, ( + f"Both matchers should return False for empty string with non-empty prefixes, " + f"got Tuple({tuple_result}), Trie({trie_result})" + ) + + +@pytest.mark.parametrize( + "test_string,expected", + [ + ("a", True), + ("1", True), + ("!", True), + ("ab", True), + ("12", True), + ("!@", True), + ("other", False), + ("", False), + ], +) +def test_single_character_edge_cases(test_string, expected): + """Test single character prefixes and strings (without empty prefixes).""" + prefixes = ["a", "1", "!"] + + tuple_matcher = TupleMatcher(prefixes) + trie_matcher = TrieMatcher(prefixes) + + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + + assert ( + tuple_result == trie_result == expected + ), f"Mismatch for '{test_string}': Tuple({tuple_result}), Trie({trie_result}), Expected({expected})" + + +def test_performance_with_many_prefixes(): + """Test with a large number of prefixes to ensure both matchers handle it.""" + # Create many prefixes + prefixes = [f"prefix_{i}" for i in range(1000)] + test_strings = ["prefix_500test", "prefix_999", "nomatch", "prefix_1000"] + + tuple_matcher = TupleMatcher(prefixes) + trie_matcher = TrieMatcher(prefixes) + + for test_string in test_strings: + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + assert tuple_result == trie_result + + +@pytest.mark.parametrize( + "test_string,expected", + [ + ("", False), + ("a", True), + ("ab", True), + ("abc", True), + ("abcd", True), + ("abcde", True), + ("abcdef", True), + ("b", False), + ("ac", True), + ], +) +def test_nested_prefixes(test_string, expected): + """Test with prefixes that are nested within each other.""" + prefixes = ["a", "ab", "abc", "abcd", "abcde"] + + tuple_matcher = TupleMatcher(prefixes) + trie_matcher = TrieMatcher(prefixes) + + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + + assert tuple_result == trie_result == expected, ( + f"Nested prefix test failed for '{test_string}': " + f"expected {expected}, got Tuple({tuple_result}), Trie({trie_result})" + ) + + +@pytest.mark.parametrize( + "test_string,expected", + [ + ("🌟test", True), + ("café au lait", True), + ("𝓤𝓷𝓲𝓬𝓸𝓭𝓮 text", True), + ("regular", False), + ("", False), + ], +) +def test_unicode_edge_cases(test_string, expected): + """Test Unicode handling edge cases (without empty prefixes).""" + prefixes = ["🌟", "café", "𝓤𝓷𝓲𝓬𝓸𝓭𝓮"] + + tuple_matcher = TupleMatcher(prefixes) + trie_matcher = TrieMatcher(prefixes) + + tuple_result = tuple_matcher.matches(test_string) + trie_result = trie_matcher.matches(test_string) + + assert ( + tuple_result == trie_result == expected + ), f"Unicode mismatch for '{test_string}': Tuple({tuple_result}), Trie({trie_result}), Expected({expected})" + + +def test_with_list_and_tuple_inputs(): + """Test that both list and tuple inputs work identically.""" + prefixes_list = ["test", "demo", "example"] + prefixes_tuple = ("test", "demo", "example") + test_strings = ["testing", "demo version", "example.com", "other"] + + # Test with list input + tuple_matcher_list = TupleMatcher(prefixes_list) + trie_matcher_list = TrieMatcher(prefixes_list) + + # Test with tuple input + tuple_matcher_tuple = TupleMatcher(prefixes_tuple) + trie_matcher_tuple = TrieMatcher(prefixes_tuple) + + for test_string in test_strings: + # All four matchers should give same result + results = [ + tuple_matcher_list.matches(test_string), + trie_matcher_list.matches(test_string), + tuple_matcher_tuple.matches(test_string), + trie_matcher_tuple.matches(test_string), + ] + + assert all( + r == results[0] for r in results + ), f"Inconsistent results for '{test_string}': {results}" + From c8dbcf01d0db6068d4913df14aa1dbb10128eb98 Mon Sep 17 00:00:00 2001 From: malteos Date: Fri, 22 Aug 2025 13:03:13 +0000 Subject: [PATCH 06/23] Include subpackages --- setup.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/setup.py b/setup.py index a32e4d5..d4da901 100755 --- a/setup.py +++ b/setup.py @@ -2,12 +2,10 @@ from os import path -from setuptools import setup +from setuptools import setup, find_packages -packages = [ - 'cdx_toolkit', -] +packages = find_packages(include=['cdx_toolkit*']) # remember: keep requires synchronized with requirements.txt requires = ['requests', 'warcio', 'fsspec[s3]', 'surt'] From 77ae6ca8e0a1f62a2494e7900acdc9bd4a0065dc Mon Sep 17 00:00:00 2001 From: malteos Date: Mon, 25 Aug 2025 11:50:05 +0000 Subject: [PATCH 07/23] Added parallelization to filter_cdx command --- cdx_toolkit/filter_cdx/__init__.py | 135 ++++++++++++------- cdx_toolkit/filter_cdx/args.py | 6 + requirements.txt | 1 + setup.py | 2 +- tests/conftest.py | 22 +++ tests/data/filter_cdx/whitelist_11_surts.txt | 11 ++ tests/test_filter_cdx.py | 31 ++++- 7 files changed, 157 insertions(+), 51 deletions(-) create mode 100644 tests/conftest.py create mode 100644 tests/data/filter_cdx/whitelist_11_surts.txt diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py index 6df2556..9cdc2f4 100644 --- a/cdx_toolkit/filter_cdx/__init__.py +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -2,6 +2,8 @@ import os import time import sys +from concurrent.futures import ProcessPoolExecutor, as_completed +from functools import partial import fsspec from surt import surt @@ -69,57 +71,49 @@ def run_filter_cdx(args, cmdline: str): f"Loaded {len(include_surt_prefixes):,} filter entries using {args.matching_approach} approach" ) - # Process each input/output file pair + # Process files in parallel or sequentially total_lines_n = 0 total_included_n = 0 - log_every_n = 100_000 - - for input_path, output_path in zip(input_paths, output_paths): - logger.info("Reading index from %s", input_path) - logger.info("Writing filter output to %s", output_path) - - lines_n = 0 - included_n = 0 - - # Input/output from local or remote file system - input_fs, input_fs_path = fsspec.url_to_fs(input_path) - output_fs, output_fs_path = fsspec.url_to_fs(output_path) - - # Make sure output directory exists - output_fs.makedirs(output_fs._parent(output_fs_path), exist_ok=True) - - # Read and write compressed file if needed - compression = "gzip" if input_fs_path.endswith(".gz") else None - - with output_fs.open(output_fs_path, "w", compression=compression) as output_f: - with input_fs.open(input_fs_path, "rt", compression=compression) as input_f: - for i, line in enumerate(input_f, 1): - # Read CDX line - surt_length = line.find( - " " - ) # we do not need to parse the full line - record_surt = line[:surt_length] - lines_n += 1 - - # Use matcher - include_record = matcher.matches(record_surt) - - if include_record: - output_f.write(line) - included_n += 1 - - if args.limit > 0 and included_n >= args.limit: - logger.info("Limit reached at %i", args.limit) - break - - if (i % log_every_n) == 0: - logger.info(f"Lines completed: {i:,} (matched: {included_n:,})") - - logger.info( - f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" - ) - total_lines_n += lines_n - total_included_n += included_n + + if getattr(args, 'parallel', 1) > 1: + # Parallel processing + with ProcessPoolExecutor(max_workers=args.parallel) as executor: + # Create partial function with common arguments + process_file_partial = partial( + _process_single_file, + matcher=matcher, + limit=args.limit if hasattr(args, 'limit') else 0 + ) + + # Submit all jobs + future_to_paths = { + executor.submit(process_file_partial, input_path, output_path): (input_path, output_path) + for input_path, output_path in zip(input_paths, output_paths) + } + + # Collect results + for future in as_completed(future_to_paths): + input_path, output_path = future_to_paths[future] + try: + lines_n, included_n = future.result() + logger.info( + f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" + ) + total_lines_n += lines_n + total_included_n += included_n + except Exception as exc: + logger.error(f"File {input_path} generated an exception: {exc}") + else: + # Sequential processing (original behavior) + for input_path, output_path in zip(input_paths, output_paths): + lines_n, included_n = _process_single_file( + input_path, output_path, matcher, args.limit if hasattr(args, 'limit') else 0 + ) + logger.info( + f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" + ) + total_lines_n += lines_n + total_included_n += included_n logger.info( f"Total statistics: included_n={total_included_n}; lines_n={total_lines_n}; ratio={total_included_n/total_lines_n:.4f}" @@ -158,6 +152,49 @@ def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str): return input_file_paths, output_file_paths +def _process_single_file(input_path, output_path, matcher, limit: int = 0, log_every_n: int = 100_000): + """Process a single input/output file pair. Returns (lines_n, included_n).""" + lines_n = 0 + included_n = 0 + + logger.info("Reading index from %s", input_path) + logger.info("Writing filter output to %s", output_path) + + # Input/output from local or remote file system + input_fs, input_fs_path = fsspec.url_to_fs(input_path) + output_fs, output_fs_path = fsspec.url_to_fs(output_path) + + # Make sure output directory exists + output_fs.makedirs(output_fs._parent(output_fs_path), exist_ok=True) + + # Read and write compressed file if needed + compression = "gzip" if input_fs_path.endswith(".gz") else None + + with output_fs.open(output_fs_path, "w", compression=compression) as output_f: + with input_fs.open(input_fs_path, "rt", compression=compression) as input_f: + for i, line in enumerate(input_f, 1): + # Read CDX line + surt_length = line.find(" ") # we do not need to parse the full line + record_surt = line[:surt_length] + lines_n += 1 + + # Use matcher + include_record = matcher.matches(record_surt) + + if include_record: + output_f.write(line) + included_n += 1 + + if limit > 0 and included_n >= limit: + logger.info("Limit reached at %i from %s", limit, input_path) + break + + if (i % log_every_n) == 0: + logger.info(f"Lines completed: {i:,} (matched: {included_n:,}) from {input_path}") + + return lines_n, included_n + + def validate_resolved_paths(output_paths, overwrite): """Validate resolved output paths and create directories if needed.""" # Check if output files exist and overwrite flag diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py index 40bb79e..818412b 100644 --- a/cdx_toolkit/filter_cdx/args.py +++ b/cdx_toolkit/filter_cdx/args.py @@ -36,5 +36,11 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): action="store_true", help="Allow overwriting existing output files", ) + parser.add_argument( + "--parallel", + type=int, + default=1, + help="Number of parallel workers for processing multiple input files (default: 1, sequential processing)", + ) return parser diff --git a/requirements.txt b/requirements.txt index 97d61be..f958c0d 100644 --- a/requirements.txt +++ b/requirements.txt @@ -11,6 +11,7 @@ pytest==6.2.4 pytest-cov==2.12.1 pytest-sugar==0.9.4 coveralls==3.1.0 +botocore>=1.39.11 # packaging twine==3.4.1 diff --git a/setup.py b/setup.py index d4da901..38d5c61 100755 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ # remember: keep requires synchronized with requirements.txt requires = ['requests', 'warcio', 'fsspec[s3]', 'surt'] -test_requirements = ['pytest', 'pytest-cov'] +test_requirements = ['pytest', 'pytest-cov', 'boto3'] package_requirements = ['twine', 'setuptools', 'setuptools-scm'] diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..7a5dbd4 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,22 @@ +import pytest +import boto3 +from botocore.exceptions import NoCredentialsError, ClientError + + +def check_aws_s3_access(): + """Check if AWS S3 access is available.""" + try: + s3_client = boto3.client('s3') + # Try to list buckets as a simple check + s3_client.list_buckets() + return True + except (NoCredentialsError, ClientError): + return False + + +def requires_aws_s3(func): + """Pytest decorator that skips test if AWS S3 access is not available.""" + return pytest.mark.skipif( + not check_aws_s3_access(), + reason="AWS S3 access not available (no credentials or permissions)" + )(func) \ No newline at end of file diff --git a/tests/data/filter_cdx/whitelist_11_surts.txt b/tests/data/filter_cdx/whitelist_11_surts.txt new file mode 100644 index 0000000..a2ee272 --- /dev/null +++ b/tests/data/filter_cdx/whitelist_11_surts.txt @@ -0,0 +1,11 @@ +com,example)/ +edu,si)/ +com,youtube)/ +gov,archives)/ +gov,census)/ +com,741,onlinedegrees)/online_university_degree_program.html +com,72pines,star)/2007/06/25/%e6%8f%90%e5%8f%96%e5%85%ac%e7%a7%af%e9%87%91/trackback +fr,missiondefrance,bibliotheque)/ +fr,mnhn,biodiv)/fr/taxonomy +fr,mobilierpourchr,wip)/produit/t-837 +fr,tie-up)/ \ No newline at end of file diff --git a/tests/test_filter_cdx.py b/tests/test_filter_cdx.py index 86fcc38..7d864f9 100644 --- a/tests/test_filter_cdx.py +++ b/tests/test_filter_cdx.py @@ -3,10 +3,12 @@ from cdx_toolkit.cli import main from cdx_toolkit.filter_cdx import resolve_paths, validate_resolved_paths +from conftest import requires_aws_s3 fixture_path = Path(__file__).parent / "data/filter_cdx" +@requires_aws_s3 def test_cli_filter_cdx_with_surts(tmpdir, caplog): # check if expected number is reached index_path = "s3://commoncrawl/cc-index/collections" @@ -20,7 +22,9 @@ def test_cli_filter_cdx_with_surts(tmpdir, caplog): ) assert "Limit reached" in caplog.text - + + +@requires_aws_s3 def test_cli_filter_cdx_with_urls(tmpdir, caplog): # check if expected number is reached index_path = "s3://commoncrawl/cc-index/collections" @@ -36,6 +40,7 @@ def test_cli_filter_cdx_with_urls(tmpdir, caplog): assert "Limit reached" in caplog.text +@requires_aws_s3 def test_resolve_cdx_paths_from_cc_s3_to_local(tmpdir): tmpdir = str(tmpdir) base_path = "s3://commoncrawl/cc-index/collections" @@ -58,6 +63,7 @@ def test_resolve_cdx_paths_from_cc_s3_to_local(tmpdir): assert input_files[-1] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00299.gz" +@requires_aws_s3 def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): output_base_path = "s3://some-other-bucket/filter-cdx" base_path = "s3://commoncrawl/cc-index/collections" @@ -80,6 +86,7 @@ def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): assert input_files[-1] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00099.gz" +@requires_aws_s3 def test_filter_cdx_nonexistent_surt_file_exits(tmpdir, caplog): index_path = "s3://commoncrawl/cc-index/collections" index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" @@ -123,3 +130,25 @@ def test_validate_resolved_paths_existing_file_exits(tmpdir, caplog): assert f"Output file already exists: {str(existing_file)}" in caplog.text assert "Use --overwrite to overwrite existing files" in caplog.text + +@requires_aws_s3 +def test_cli_filter_cdx_with_parallel_processing(tmpdir, caplog): + """Test that parallel processing works correctly and processes multiple files.""" + index_path = "s3://commoncrawl/cc-index/collections" + index_glob = "/CC-MAIN-2024-30/indexes/cdx-0018[78].gz" # Multiple files pattern + whitelist_path = fixture_path / "whitelist_11_surts.txt" # Additonal entry for cdx-00188.gz + + # Run with parallel processing (2 workers) + main( + args=f"-v --limit 10 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --filter-type surt --input-glob {index_glob} --parallel 2".split() + ) + + # Check that multiple files were processed in parallel + assert "Found" in caplog.text and "files matching pattern" in caplog.text + assert "File statistics for" in caplog.text + assert "Total statistics:" in caplog.text + + # Should have processed multiple files (pattern matches 2 files: cdx-00187.gz and cdx-00188.gz) + file_stats_count = caplog.text.count("File statistics for") + assert file_stats_count == 2, "Should process exactly 2 files with the glob pattern" + From bfded06b034bc75bc7922b00fd2d16acd108404d Mon Sep 17 00:00:00 2001 From: malteos Date: Mon, 25 Aug 2025 11:51:38 +0000 Subject: [PATCH 08/23] removed test file --- tests/data/warc_by_cdx/cdx-00187 | 1140 ------------------------------ 1 file changed, 1140 deletions(-) delete mode 100644 tests/data/warc_by_cdx/cdx-00187 diff --git a/tests/data/warc_by_cdx/cdx-00187 b/tests/data/warc_by_cdx/cdx-00187 deleted file mode 100644 index 70ecc69..0000000 --- a/tests/data/warc_by_cdx/cdx-00187 +++ /dev/null @@ -1,1140 +0,0 @@ -fr,missiondefrance,bibliotheque)/index.php?id=319&lvl=bulletin_display 20240716153155 {"url": "https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319", "mime": "text/html", "mime-detected": "application/xhtml+xml", "status": "200", "digest": "D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP", "length": "9754", "offset": "111440525", 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1: # Parallel processing - with ProcessPoolExecutor(max_workers=args.parallel) as executor: + logger.info("Parallel processes: %i", n_parallel) + with ProcessPoolExecutor(max_workers=n_parallel) as executor: # Create partial function with common arguments process_file_partial = partial( _process_single_file, @@ -104,7 +106,8 @@ def run_filter_cdx(args, cmdline: str): except Exception as exc: logger.error(f"File {input_path} generated an exception: {exc}") else: - # Sequential processing (original behavior) + # Sequential processing + logger.info("Sequential processing") for input_path, output_path in zip(input_paths, output_paths): lines_n, included_n = _process_single_file( input_path, output_path, matcher, args.limit if hasattr(args, 'limit') else 0 From 016c5861da59f73b111551443a95d2821eb7c71a Mon Sep 17 00:00:00 2001 From: malteos Date: Mon, 25 Aug 2025 20:48:37 +0000 Subject: [PATCH 10/23] bug fix --- cdx_toolkit/filter_cdx/__init__.py | 35 +++++++++++++++++++++--------- 1 file changed, 25 insertions(+), 10 deletions(-) diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py index 9811ddc..6aa0999 100644 --- a/cdx_toolkit/filter_cdx/__init__.py +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -73,8 +73,10 @@ def run_filter_cdx(args, cmdline: str): # Process files in parallel or sequentially n_parallel = args.parallel + limit = 0 if args.limit is None else args.limit total_lines_n = 0 total_included_n = 0 + total_errors_n = 0 if n_parallel > 1: # Parallel processing @@ -84,7 +86,7 @@ def run_filter_cdx(args, cmdline: str): process_file_partial = partial( _process_single_file, matcher=matcher, - limit=args.limit if hasattr(args, 'limit') else 0 + limit=limit ) # Submit all jobs @@ -103,24 +105,32 @@ def run_filter_cdx(args, cmdline: str): ) total_lines_n += lines_n total_included_n += included_n + except Exception as exc: logger.error(f"File {input_path} generated an exception: {exc}") + total_errors_n += 1 else: # Sequential processing logger.info("Sequential processing") for input_path, output_path in zip(input_paths, output_paths): - lines_n, included_n = _process_single_file( - input_path, output_path, matcher, args.limit if hasattr(args, 'limit') else 0 - ) - logger.info( - f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" - ) - total_lines_n += lines_n - total_included_n += included_n + try: + lines_n, included_n = _process_single_file( + input_path, output_path, matcher, limit + ) + logger.info( + f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" + ) + total_lines_n += lines_n + total_included_n += included_n + except Exception as exc: + logger.error(f"File {input_path} generated an exception: {exc}") + total_errors_n += 1 logger.info( f"Total statistics: included_n={total_included_n}; lines_n={total_lines_n}; ratio={total_included_n/total_lines_n:.4f}" ) + if total_errors_n > 0: + logger.error("Processing errors: %i", total_errors_n) # End timing and log execution time end_time = time.time() @@ -181,7 +191,7 @@ def _process_single_file(input_path, output_path, matcher, limit: int = 0, log_e record_surt = line[:surt_length] lines_n += 1 - # Use matcher + # Use SURT matcher include_record = matcher.matches(record_surt) if include_record: @@ -195,6 +205,11 @@ def _process_single_file(input_path, output_path, matcher, limit: int = 0, log_e if (i % log_every_n) == 0: logger.info(f"Lines completed: {i:,} (matched: {included_n:,}) from {input_path}") + # Delete file if empty + if included_n == 0: + logger.warning("Output file is empty, removing it: %s", output_fs_path) + output_fs.rm(output_fs_path) + return lines_n, included_n From 44f3b09fae38ac418d9d4080bb94ada5dd659d95 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 27 Aug 2025 11:22:34 +0000 Subject: [PATCH 11/23] Adding S3 writter and reader support for WARCs --- cdx_toolkit/cli.py | 1 + cdx_toolkit/utils.py | 1 + cdx_toolkit/warc.py | 48 +++++++--- cdx_toolkit/warcer_by_cdx/__init__.py | 57 +++++++++--- cdx_toolkit/warcer_by_cdx/args.py | 2 - examples/iter-and-warc.py | 2 + requirements.txt | 1 + scripts/cdx_iter | 2 + setup.py | 2 +- tests/test_warc_by_cdx.py | 13 ++- tests/test_warc_writer.py | 125 ++++++++++++++++++++++++++ tests/unit/test_warc.py | 34 ++++++- 12 files changed, 258 insertions(+), 30 deletions(-) create mode 100644 tests/test_warc_writer.py diff --git a/cdx_toolkit/cli.py b/cdx_toolkit/cli.py index 0ca89db..2c3fa60 100644 --- a/cdx_toolkit/cli.py +++ b/cdx_toolkit/cli.py @@ -187,6 +187,7 @@ def warcer(cmd, cmdline): LOGGER.warning('revisit record being resolved for url %s %s', url, timestamp) writer.write_record(record) + writer.close() def sizer(cmd, cmdline): diff --git a/cdx_toolkit/utils.py b/cdx_toolkit/utils.py index f175d76..55f0d20 100644 --- a/cdx_toolkit/utils.py +++ b/cdx_toolkit/utils.py @@ -5,6 +5,7 @@ LOGGER = logging.getLogger(__name__) + def get_version(): return cdx_toolkit.__version__ diff --git a/cdx_toolkit/warc.py b/cdx_toolkit/warc.py index ac8435e..391e755 100644 --- a/cdx_toolkit/warc.py +++ b/cdx_toolkit/warc.py @@ -5,6 +5,7 @@ import logging import sys +import fsspec from warcio import WARCWriter from warcio.recordloader import ArcWarcRecordLoader from warcio.bufferedreaders import DecompressingBufferedReader @@ -131,10 +132,19 @@ def fetch_warc_record(capture, warc_download_prefix): length = int(capture['length']) warc_url = warc_download_prefix + '/' + filename - headers = {'Range': 'bytes={}-{}'.format(offset, offset+length-1)} - resp = myrequests_get(warc_url, headers=headers) - record_bytes = resp.content + if warc_url.startswith("s3:"): + # fetch from S3 + with fsspec.open(warc_url, 'rb') as f: + f.seek(offset) + record_bytes = f.read(length) + else: + # fetch over HTTP + headers = {'Range': 'bytes={}-{}'.format(offset, offset+length-1)} + + resp = myrequests_get(warc_url, headers=headers) + record_bytes = resp.content + stream = DecompressingBufferedReader(BytesIO(record_bytes)) record = ArcWarcRecordLoader().parse_record_stream(stream) @@ -152,6 +162,9 @@ def fetch_warc_record(capture, warc_download_prefix): class CDXToolkitWARCWriter: + """Writer for WARC files. + + The fsspec package is used for writting to local or remote file system, e.g., S3.""" def __init__(self, prefix, subprefix, info, size=1000000000, gzip=True, warc_version=None): self.prefix = prefix self.subprefix = subprefix @@ -161,6 +174,9 @@ def __init__(self, prefix, subprefix, info, size=1000000000, gzip=True, warc_ver self.warc_version = warc_version self.segment = 0 self.writer = None + self.file_handler = None + self.file_system, self.file_system_prefix = fsspec.url_to_fs(self.prefix) + self._file_context = None def write_record(self, *args, **kwargs): if self.writer is None: @@ -175,21 +191,21 @@ def write_record(self, *args, **kwargs): self.writer.write_record(*args, **kwargs) - fsize = os.fstat(self.fd.fileno()).st_size - if fsize > self.size: - self.fd.close() + # Compare file size of current segment with max. file size + if self.file_handler and self.file_handler.tell() > self.size: + self._close_current_file() self.writer = None self.segment += 1 def _unique_warc_filename(self): while True: - name = self.prefix + '-' + name = self.file_system_prefix + '-' if self.subprefix is not None: name += self.subprefix + '-' name += '{:06d}'.format(self.segment) + '.extracted.warc' if self.gzip: name += '.gz' - if os.path.exists(name): + if self.file_system.exists(name): self.segment += 1 else: break @@ -197,12 +213,24 @@ def _unique_warc_filename(self): def _start_new_warc(self): self.filename = self._unique_warc_filename() - self.fd = open(self.filename, 'wb') + self._file_context = self.file_system.open(self.filename, 'wb') + self.file_handler = self._file_context.__enter__() LOGGER.info('opening new warc file %s', self.filename) - self.writer = WARCWriter(self.fd, gzip=self.gzip, warc_version=self.warc_version) + self.writer = WARCWriter(self.file_handler, gzip=self.gzip, warc_version=self.warc_version) warcinfo = self.writer.create_warcinfo_record(self.filename, self.info) self.writer.write_record(warcinfo) + def _close_current_file(self): + # Close the handler of the current file (needed for fsspec abstraction) + if self._file_context is not None: + self._file_context.__exit__(None, None, None) + self._file_context = None + self.file_handler = None + + def close(self): + # Close the WARC writer (this must be called at the end) + self._close_current_file() + def get_writer(prefix, subprefix, info, **kwargs): return CDXToolkitWARCWriter(prefix, subprefix, info, **kwargs) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index dc20273..99ca870 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -1,6 +1,7 @@ from io import BytesIO import json import logging +import os from pathlib import Path import sys from typing import Iterable @@ -8,6 +9,7 @@ import fsspec +from tqdm import tqdm from warcio import WARCWriter from warcio.recordloader import ArcWarcRecord @@ -51,18 +53,30 @@ def run_warcer_by_cdx(args, cmdline): kwargs_writer["size"] = kwargs["size"] del kwargs["size"] + log_every_n = 10_000 + limit = 0 if args.limit is None else args.limit + prefix_path = Path(args.prefix) + + # make sure the base dir exists + os.makedirs(prefix_path.parent, exist_ok=True) + writer = cdx_toolkit.warc.get_writer( - args.prefix, args.subprefix, info, **kwargs_writer + str(prefix_path), args.subprefix, info, **kwargs_writer ) # Prepare index paths + index_fs, index_fs_path = fsspec.url_to_fs(args.index_path) + if args.index_glob is None: # Read from a single index index_paths = [args.index_path] else: # Fetch multiple indicies via glob - index_fs, index_fs_path = fsspec.url_to_fs(args.index_path) - index_paths = sorted(index_fs.glob(args.index_glob)) + full_glob = index_fs_path + args.index_glob + + logger.info("glob pattern from %s (%s)", full_glob, index_fs.protocol) + + index_paths = sorted(index_fs.glob(full_glob)) logger.info( "glob pattern found %i index files in %s", len(index_paths), index_fs_path @@ -75,15 +89,21 @@ def run_warcer_by_cdx(args, cmdline): # Iterate over index files records_n = 0 for index_path in index_paths: - logger.info("filtering based on index from %s", index_path) + logger.info("filtering based on index from %s (%s)", index_path, index_fs.protocol) # Read index completely (for the WARC resource record) - index = get_index_from_path(index_path) + index = get_index_from_path(index_path, index_fs=index_fs) + + if not index: + # skip empty indicies + continue # Write index as record to WARC # TODO at what position should the resource records be written? writer.write_record(get_index_record(index, index_path)) + logger.info("index resource recorded added") + # The index file holds all the information to download specific objects (file, offset, length etc.) for obj in generate_caputure_objects_from_index( index=index, warc_download_prefix=cdx.warc_download_prefix @@ -105,22 +125,30 @@ def run_warcer_by_cdx(args, cmdline): writer.write_record(record) records_n += 1 - if args.limit > 0 and records_n >= args.limit: - logger.info("Limit reached at %i", args.limit) + if (records_n % log_every_n) == 0: + logger.info(f"Records completed: {records_n:,} from {index_path}") + + if limit > 0 and records_n >= limit: + logger.info("Limit reached at %i", limit) break - if args.limit > 0 and records_n >= args.limit: + if limit > 0 and records_n >= limit: # stop index loop break logger.info("Filtering completed (index file: %s)", index_path) + writer.close() + logger.info("WARC records extracted: %i", records_n) -def get_index_from_path(index_path: str | Path) -> str: +def get_index_from_path(index_path: str | Path, index_fs: None | fsspec.AbstractFileSystem = None) -> str: """Fetch (and decompress) index content as string from local or remote path.""" - index_fs, index_fs_path = fsspec.url_to_fs(index_path) + if index_fs is None: + index_fs, index_fs_path = fsspec.url_to_fs(index_path) + else: + index_fs_path = index_path compression = "gzip" if index_fs_path.endswith(".gz") else None @@ -143,10 +171,15 @@ def get_index_record( def generate_caputure_objects_from_index( - index: str, warc_download_prefix=None, limit: int = 0 + index: str, warc_download_prefix=None, limit: int = 0, progress_bar: bool = True ) -> Iterable[cdx_toolkit.CaptureObject]: """Read CDX index and generate CaptureObject objects.""" - for i, line in enumerate(index.splitlines(), 1): + index_lines = index.splitlines() + + # if progress_bar: + # index_lines = tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)) + + for i, line in enumerate(tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)), 1): cols = line.split(" ", maxsplit=2) if len(cols) == 3: diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index 3c9368f..5534a07 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -1,5 +1,3 @@ -import os -import sys import logging import argparse diff --git a/examples/iter-and-warc.py b/examples/iter-and-warc.py index 73ea3dd..b346d3f 100755 --- a/examples/iter-and-warc.py +++ b/examples/iter-and-warc.py @@ -32,3 +32,5 @@ writer.write_record(record) print(' wrote', url) + +writer.close() \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index f958c0d..e6d8a91 100644 --- a/requirements.txt +++ b/requirements.txt @@ -5,6 +5,7 @@ requests==2.25.1 warcio==1.7.4 fsspec[s3] surt>=0.3.1 +tqdm>=4.67.1 # used by Makefile pytest==6.2.4 diff --git a/scripts/cdx_iter b/scripts/cdx_iter index 8b0c5a3..99445c0 100644 --- a/scripts/cdx_iter +++ b/scripts/cdx_iter @@ -143,6 +143,8 @@ elif args.warc: if obj.is_revisit(): LOGGER.warning('revisit record being resolved for url %s %s', url, timestamp) writer.write_record(record) + + writer.close() else: for obj in cdx.iter(args.url, **kwargs): printme = winnow_fields(obj) diff --git a/setup.py b/setup.py index 38d5c61..3eab3d2 100755 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ packages = find_packages(include=['cdx_toolkit*']) # remember: keep requires synchronized with requirements.txt -requires = ['requests', 'warcio', 'fsspec[s3]', 'surt'] +requires = ['requests', 'warcio', 'fsspec[s3]', 'surt', 'tqdm'] test_requirements = ['pytest', 'pytest-cov', 'boto3'] diff --git a/tests/test_warc_by_cdx.py b/tests/test_warc_by_cdx.py index b405809..db00920 100644 --- a/tests/test_warc_by_cdx.py +++ b/tests/test_warc_by_cdx.py @@ -12,12 +12,12 @@ fixture_path = Path(__file__).parent / "data/warc_by_cdx" -def test_cli_warc_by_cdx(tmpdir, caplog): +def assert_cli_warc_by_cdx(warc_download_prefix, tmpdir, caplog): # test cli and check output index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" main( - args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 10 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_warc_by_index --creator foo --operator bob""".split() + args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix}""".split() ) # Check log @@ -48,6 +48,15 @@ def test_cli_warc_by_cdx(tmpdir, caplog): assert "operator: bob" in info_record +def test_cli_warc_by_cdx_over_http(tmpdir, caplog): + assert_cli_warc_by_cdx("https://data.commoncrawl.org", tmpdir, caplog) + + +def test_cli_warc_by_cdx_over_s3(tmpdir, caplog): + assert_cli_warc_by_cdx("s3://commoncrawl", tmpdir, caplog) + + + def test_get_caputure_objects_from_index(): index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" diff --git a/tests/test_warc_writer.py b/tests/test_warc_writer.py new file mode 100644 index 0000000..78cbaee --- /dev/null +++ b/tests/test_warc_writer.py @@ -0,0 +1,125 @@ +from io import BytesIO +import os +import fsspec +import pytest +import cdx_toolkit + +from conftest import requires_aws_s3 + +from warcio import WARCWriter +from warcio.recordloader import ArcWarcRecord +from warcio.archiveiterator import ArchiveIterator + +@pytest.mark.parametrize( + "prefix,gzip", + [ + pytest.param("test-prefix", False, id="File name prefix on local"), + pytest.param("test-prefix", True, id="File name prefix on local with gzip"), + + # pytest.param("test-prefix-folder/file-prefix", None, id="Folder as prefix"), # raised FileNotFound error (parent dir does not exist) + ], +) +def test_write_to_local(prefix, gzip, tmpdir): + info = { + 'software': 'pypi_cdx_toolkit/test', + 'description': 'test', + 'format': 'WARC file version 1.0', + } + encoding = "utf-8" + full_prefix = str(tmpdir) + "/" + prefix + fs, fs_prefix_path = fsspec.url_to_fs(full_prefix) + + writer = cdx_toolkit.warc.get_writer(full_prefix, None, info, gzip=gzip) + + # single record + input_resource_record_text = "foo bar text" + writer.write_record(WARCWriter(None).create_warc_record( + uri="foo/bar", + record_type="resource", + payload=BytesIO(input_resource_record_text.encode(encoding)), + warc_content_type="text/plain", + ) + ) + writer.close() + + # Check that WARC file was created + warc_path = fs_prefix_path + "-000000.extracted.warc" + if gzip: + warc_path += ".gz" + + assert fs.exists(warc_path) + + # Validate that creator/operator are not in warcinfo record + info_record = None + resource_record = None + with open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode(encoding) + + if record.rec_type == 'resource': + resource_record = record.content_stream().read().decode(encoding) + break + + assert resource_record is not None + assert info_record is not None + + assert "description: test" in info_record + assert resource_record == input_resource_record_text + + +@requires_aws_s3 +@pytest.mark.parametrize( + "prefix", + [ + pytest.param("s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs", id="S3 prefix"), + ], +) +def test_write_to_s3(prefix, tmpdir): + info = { + 'software': 'pypi_cdx_toolkit/test', + 'description': 'test', + 'format': 'WARC file version 1.0', + } + encoding = "utf-8" + full_prefix = prefix + str(tmpdir) # append tmp dir on S3 + fs, fs_prefix_path = fsspec.url_to_fs(full_prefix) + + # remove all existing paths from S3 dir + if fs.exists(prefix): + fs.rm(prefix, recursive=True) + + writer = cdx_toolkit.warc.get_writer(full_prefix, None, info) + + # single record + input_resource_record_text = "foo bar text" + writer.write_record(WARCWriter(None).create_warc_record( + uri="foo/bar", + record_type="resource", + payload=BytesIO(input_resource_record_text.encode(encoding)), + warc_content_type="text/plain", + ) + ) + writer.close() + + # Check that WARC file was created + warc_path = fs_prefix_path + "-000000.extracted.warc.gz" + assert fs.exists(warc_path) + + # Validate that creator/operator are not in warcinfo record + info_record = None + resource_record = None + with fs.open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode(encoding) + + if record.rec_type == 'resource': + resource_record = record.content_stream().read().decode(encoding) + break + + assert resource_record is not None + assert info_record is not None + + assert "description: test" in info_record + assert resource_record == input_resource_record_text diff --git a/tests/unit/test_warc.py b/tests/unit/test_warc.py index e5df43f..0c52614 100644 --- a/tests/unit/test_warc.py +++ b/tests/unit/test_warc.py @@ -1,7 +1,35 @@ -import cdx_toolkit.warc - +from conftest import requires_aws_s3 +from cdx_toolkit.warc import wb_redir_to_original, fetch_warc_record def test_wb_redir_to_original(): location = 'https://web.archive.org/web/20110209062054id_/http://commoncrawl.org/' ret = 'http://commoncrawl.org/' - assert cdx_toolkit.warc.wb_redir_to_original(location) == ret + assert wb_redir_to_original(location) == ret + + +def test_fetch_warc_record_from_http(): + encoding = "utf-8" + capture = {'url': 'https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319', 'mime': 'text/html', 'mime-detected': 'application/xhtml+xml', 'status': '200', 'digest': 'D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP', 'length': '9754', 'offset': '111440525', 'filename': 'crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz', 'charset': 'UTF-8', 'languages': 'fra', 'timestamp': '20240716153155'} + warc_download_prefix = 'https://data.commoncrawl.org' + + record = fetch_warc_record(capture, warc_download_prefix) + record_content = record.content_stream().read().decode(encoding, errors="ignore") + + assert record.rec_type == "response" + assert record.length == 75825 + assert "Catalogue en ligne Mission de France" in record_content + + +@requires_aws_s3 +def test_fetch_warc_record_from_s3(): + encoding = "utf-8" + capture = {'url': 'https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319', 'mime': 'text/html', 'mime-detected': 'application/xhtml+xml', 'status': '200', 'digest': 'D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP', 'length': '9754', 'offset': '111440525', 'filename': 'crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz', 'charset': 'UTF-8', 'languages': 'fra', 'timestamp': '20240716153155'} + warc_download_prefix = 's3://commoncrawl' + + record = fetch_warc_record(capture, warc_download_prefix) + record_content = record.content_stream().read().decode(encoding, errors="ignore") + + assert record.rec_type == "response" + assert record.length == 75825 + assert "Catalogue en ligne Mission de France" in record_content + From 5f8d9e0c358b088c12e84e1f001d10af99d57d92 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 27 Aug 2025 11:29:46 +0000 Subject: [PATCH 12/23] added comment on CDX format --- cdx_toolkit/warcer_by_cdx/__init__.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index 99ca870..756ec0a 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -185,6 +185,10 @@ def generate_caputure_objects_from_index( if len(cols) == 3: # TODO can there be a different format? # surt, timestamp, json_data = cols + # + # CC seems to not follow the specification from https://iipc.github.io/warc-specifications/specifications/cdx-format/cdx-2015/ + # > The default first line of a CDX file is: + # > CDX A b e a m s c k r V v D d g M n data = json.loads(cols[2]) data["timestamp"] = cols[1] else: From c53562f8779ca34e08352733d158e88d629d6953 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 27 Aug 2025 12:22:38 +0000 Subject: [PATCH 13/23] Making index record optional, fixing prefix S3 handling --- cdx_toolkit/warcer_by_cdx/__init__.py | 17 +++++++++++------ cdx_toolkit/warcer_by_cdx/args.py | 5 +++++ tests/test_warc_by_cdx.py | 23 ++++++++++++++++------- 3 files changed, 32 insertions(+), 13 deletions(-) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index 756ec0a..b340bb9 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -33,6 +33,7 @@ def run_warcer_by_cdx(args, cmdline): """ cdx, kwargs = setup(args) + write_index_as_record = args.write_index_as_record ispartof = args.prefix if args.subprefix: ispartof += "-" + args.subprefix @@ -55,10 +56,11 @@ def run_warcer_by_cdx(args, cmdline): log_every_n = 10_000 limit = 0 if args.limit is None else args.limit - prefix_path = Path(args.prefix) - + prefix_path = str(args.prefix) + prefix_fs, prefix_fs_path = fsspec.url_to_fs(prefix_path) + # make sure the base dir exists - os.makedirs(prefix_path.parent, exist_ok=True) + prefix_fs.makedirs(prefix_fs._parent(prefix_fs_path), exist_ok=True) writer = cdx_toolkit.warc.get_writer( str(prefix_path), args.subprefix, info, **kwargs_writer @@ -89,7 +91,7 @@ def run_warcer_by_cdx(args, cmdline): # Iterate over index files records_n = 0 for index_path in index_paths: - logger.info("filtering based on index from %s (%s)", index_path, index_fs.protocol) + logger.info("filtering based on CDX from %s (%s)", index_path, index_fs.protocol) # Read index completely (for the WARC resource record) index = get_index_from_path(index_path, index_fs=index_fs) @@ -100,9 +102,11 @@ def run_warcer_by_cdx(args, cmdline): # Write index as record to WARC # TODO at what position should the resource records be written? - writer.write_record(get_index_record(index, index_path)) + if write_index_as_record: + logger.info("Writing CDX as resource record to WARC ... ") + writer.write_record(get_index_record(index, index_path)) - logger.info("index resource recorded added") + logger.info("CDX resource recorded added") # The index file holds all the information to download specific objects (file, offset, length etc.) for obj in generate_caputure_objects_from_index( @@ -145,6 +149,7 @@ def run_warcer_by_cdx(args, cmdline): def get_index_from_path(index_path: str | Path, index_fs: None | fsspec.AbstractFileSystem = None) -> str: """Fetch (and decompress) index content as string from local or remote path.""" + logger.info("Fetching index from %s ...", index_path) if index_fs is None: index_fs, index_fs_path = fsspec.url_to_fs(index_path) else: diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index 5534a07..6d33543 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -41,5 +41,10 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): action="store", help="prefix for downloading content, automatically set for CC", ) + parser.add_argument( + "--write-index-as-record", + action="store_true", + help="If enable, the CDX index is written as resource record to the WARC file", + ) return parser diff --git a/tests/test_warc_by_cdx.py b/tests/test_warc_by_cdx.py index db00920..795b7ad 100644 --- a/tests/test_warc_by_cdx.py +++ b/tests/test_warc_by_cdx.py @@ -1,5 +1,7 @@ import os from pathlib import Path + +import fsspec from cdx_toolkit.cli import main from cdx_toolkit.warcer_by_cdx import ( generate_caputure_objects_from_index, @@ -8,28 +10,31 @@ import pytest from warcio.archiveiterator import ArchiveIterator +from conftest import requires_aws_s3 + fixture_path = Path(__file__).parent / "data/warc_by_cdx" -def assert_cli_warc_by_cdx(warc_download_prefix, tmpdir, caplog): +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog): # test cli and check output index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" main( - args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix}""".split() + args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --write-index-as-record --prefix {str(base_prefix)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix}""".split() ) # Check log assert "Limit reached" in caplog.text # Validate extracted WARC - warc_path = os.path.join(tmpdir, "TEST_warc_by_index-000000.extracted.warc.gz") + warc_filename = "TEST_warc_by_index-000000.extracted.warc.gz" + warc_path = base_prefix + "/" + warc_filename resource_record = None info_record = None response_records = [] - with open(warc_path, 'rb') as stream: + with fsspec.open(warc_path, 'rb') as stream: for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': info_record = record.content_stream().read().decode("utf-8") @@ -49,11 +54,15 @@ def assert_cli_warc_by_cdx(warc_download_prefix, tmpdir, caplog): def test_cli_warc_by_cdx_over_http(tmpdir, caplog): - assert_cli_warc_by_cdx("https://data.commoncrawl.org", tmpdir, caplog) - + assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog) +@requires_aws_s3 def test_cli_warc_by_cdx_over_s3(tmpdir, caplog): - assert_cli_warc_by_cdx("s3://commoncrawl", tmpdir, caplog) + assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix=tmpdir, caplog=caplog) + +@requires_aws_s3 +def test_cli_warc_by_cdx_over_s3_to_s3(tmpdir, caplog): + assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog) From b48b191b6076179da151df42836e9b30e384aa58 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 27 Aug 2025 13:19:34 +0000 Subject: [PATCH 14/23] adding --parallel for warc by cdx command --- cdx_toolkit/warcer_by_cdx/__init__.py | 89 ++++++++++++++++++--------- cdx_toolkit/warcer_by_cdx/args.py | 7 ++- tests/test_warc_by_cdx.py | 9 ++- 3 files changed, 73 insertions(+), 32 deletions(-) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index b340bb9..ccccad1 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -7,6 +7,8 @@ from typing import Iterable import fsspec +from concurrent.futures import ThreadPoolExecutor, as_completed + from tqdm import tqdm @@ -54,6 +56,7 @@ def run_warcer_by_cdx(args, cmdline): kwargs_writer["size"] = kwargs["size"] del kwargs["size"] + n_parallel = args.parallel log_every_n = 10_000 limit = 0 if args.limit is None else args.limit prefix_path = str(args.prefix) @@ -109,35 +112,18 @@ def run_warcer_by_cdx(args, cmdline): logger.info("CDX resource recorded added") # The index file holds all the information to download specific objects (file, offset, length etc.) - for obj in generate_caputure_objects_from_index( - index=index, warc_download_prefix=cdx.warc_download_prefix + for record in fetch_records_from_index( + index=index, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel, limit=limit - records_n, ): - url = obj["url"] - timestamp = obj["timestamp"] - - try: - record = obj.fetch_warc_record() - except RuntimeError: # pragma: no cover - logger.warning( - "skipping capture for RuntimeError 404: %s %s", url, timestamp - ) - continue - if obj.is_revisit(): - logger.warning( - "revisit record being resolved for url %s %s", url, timestamp - ) writer.write_record(record) records_n += 1 if (records_n % log_every_n) == 0: - logger.info(f"Records completed: {records_n:,} from {index_path}") - - if limit > 0 and records_n >= limit: - logger.info("Limit reached at %i", limit) - break + logger.info(f"Record progress: {records_n:,} from {index_path}") if limit > 0 and records_n >= limit: # stop index loop + logger.info("Limit reached") break logger.info("Filtering completed (index file: %s)", index_path) @@ -174,17 +160,67 @@ def get_index_record( warc_headers_dict=None, # TODO should we add some other metadata headers? ) +def fetch_single_record(obj): + """Fetch a single WARC record with error handling.""" + url = obj["url"] + timestamp = obj["timestamp"] + + try: + record = obj.fetch_warc_record() + if obj.is_revisit(): + logger.warning( + "revisit record being resolved for url %s %s", url, timestamp + ) + return record + except RuntimeError: # pragma: no cover + logger.warning( + "skipping capture for RuntimeError 404: %s %s", url, timestamp + ) + return None + +def fetch_records_from_index( + index: str, warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 +) -> Iterable[ArcWarcRecord]: + """Fetch WARC records based on CDX index.""" + + if n_parallel <= 1: + # Sequential processing + for obj in generate_caputure_objects_from_index( + index=index, warc_download_prefix=warc_download_prefix, limit=limit, + ): + record = fetch_single_record(obj) + if record is not None: + yield record + else: + # Parallel processing + logger.info(f"Fetch records in parallel with {n_parallel=}") + objects = list(generate_caputure_objects_from_index( + index=index, warc_download_prefix=warc_download_prefix, limit=limit, + )) + + with ThreadPoolExecutor(max_workers=n_parallel) as executor: + # Submit all tasks + future_to_obj = {executor.submit(fetch_single_record, obj): obj for obj in objects} + + # Yield results as they complete + for future in as_completed(future_to_obj): + record = future.result() + if record is not None: + yield record def generate_caputure_objects_from_index( - index: str, warc_download_prefix=None, limit: int = 0, progress_bar: bool = True + index: str, warc_download_prefix=None, limit: int = 0, progress_bar: bool = False ) -> Iterable[cdx_toolkit.CaptureObject]: """Read CDX index and generate CaptureObject objects.""" index_lines = index.splitlines() - # if progress_bar: - # index_lines = tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)) + if limit > 0: + index_lines = index_lines[:limit] - for i, line in enumerate(tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)), 1): + if progress_bar: + index_lines = tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)) + + for i, line in enumerate(index_lines, 1): cols = line.split(" ", maxsplit=2) if len(cols) == 3: @@ -202,6 +238,3 @@ def generate_caputure_objects_from_index( yield cdx_toolkit.CaptureObject( data=data, wb=None, warc_download_prefix=warc_download_prefix ) - - if limit > 0 and i >= limit: - break diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index 6d33543..e64d157 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -46,5 +46,10 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): action="store_true", help="If enable, the CDX index is written as resource record to the WARC file", ) - + parser.add_argument( + "--parallel", + type=int, + default=1, + help="Number of parallel workers for fetchin WARC records (default: 1, sequential processing)", + ) return parser diff --git a/tests/test_warc_by_cdx.py b/tests/test_warc_by_cdx.py index 795b7ad..7a1efe4 100644 --- a/tests/test_warc_by_cdx.py +++ b/tests/test_warc_by_cdx.py @@ -16,12 +16,12 @@ fixture_path = Path(__file__).parent / "data/warc_by_cdx" -def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog): +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args=""): # test cli and check output index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" main( - args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --write-index-as-record --prefix {str(base_prefix)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix}""".split() + args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --write-index-as-record --prefix {str(base_prefix)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix} {extra_args}""".split() ) # Check log @@ -29,7 +29,7 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog): # Validate extracted WARC warc_filename = "TEST_warc_by_index-000000.extracted.warc.gz" - warc_path = base_prefix + "/" + warc_filename + warc_path = str(base_prefix) + "/" + warc_filename resource_record = None info_record = None response_records = [] @@ -56,6 +56,9 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog): def test_cli_warc_by_cdx_over_http(tmpdir, caplog): assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog) +def test_cli_warc_by_cdx_over_http_in_parallel(tmpdir, caplog): + assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog, extra_args=" --parallel 2") + @requires_aws_s3 def test_cli_warc_by_cdx_over_s3(tmpdir, caplog): assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix=tmpdir, caplog=caplog) From c58c883ff6ec8ba1c4f772567a5f39c3ff0f57d4 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 27 Aug 2025 13:29:57 +0000 Subject: [PATCH 15/23] fixed progress bar --- cdx_toolkit/warcer_by_cdx/__init__.py | 21 +++++++++++++-------- 1 file changed, 13 insertions(+), 8 deletions(-) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index ccccad1..c829180 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -112,9 +112,15 @@ def run_warcer_by_cdx(args, cmdline): logger.info("CDX resource recorded added") # The index file holds all the information to download specific objects (file, offset, length etc.) - for record in fetch_records_from_index( - index=index, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel, limit=limit - records_n, - ): + index_lines = index.splitlines() + index_limit = limit - records_n + + if index_limit > 0: + index_lines = index_lines[:index_limit] + + for record in tqdm(fetch_records_from_index( + index_lines=index_lines, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel + ), desc="Fetch and write WARC", total=len(index_lines)): writer.write_record(record) records_n += 1 @@ -179,14 +185,14 @@ def fetch_single_record(obj): return None def fetch_records_from_index( - index: str, warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 + index_lines: list[str], warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 ) -> Iterable[ArcWarcRecord]: """Fetch WARC records based on CDX index.""" if n_parallel <= 1: # Sequential processing for obj in generate_caputure_objects_from_index( - index=index, warc_download_prefix=warc_download_prefix, limit=limit, + index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, ): record = fetch_single_record(obj) if record is not None: @@ -195,7 +201,7 @@ def fetch_records_from_index( # Parallel processing logger.info(f"Fetch records in parallel with {n_parallel=}") objects = list(generate_caputure_objects_from_index( - index=index, warc_download_prefix=warc_download_prefix, limit=limit, + index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, )) with ThreadPoolExecutor(max_workers=n_parallel) as executor: @@ -209,10 +215,9 @@ def fetch_records_from_index( yield record def generate_caputure_objects_from_index( - index: str, warc_download_prefix=None, limit: int = 0, progress_bar: bool = False + index_lines: list[str], warc_download_prefix=None, limit: int = 0, progress_bar: bool = False ) -> Iterable[cdx_toolkit.CaptureObject]: """Read CDX index and generate CaptureObject objects.""" - index_lines = index.splitlines() if limit > 0: index_lines = index_lines[:limit] From d1d2c76dac7b3659314e31a79aa635a59b4ba03c Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 27 Aug 2025 13:41:25 +0000 Subject: [PATCH 16/23] disable progress bar --- cdx_toolkit/warcer_by_cdx/__init__.py | 11 ++++++++--- tests/test_warc_by_cdx.py | 5 ++++- 2 files changed, 12 insertions(+), 4 deletions(-) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index c829180..2e69335 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -57,7 +57,7 @@ def run_warcer_by_cdx(args, cmdline): del kwargs["size"] n_parallel = args.parallel - log_every_n = 10_000 + log_every_n = 5 limit = 0 if args.limit is None else args.limit prefix_path = str(args.prefix) prefix_fs, prefix_fs_path = fsspec.url_to_fs(prefix_path) @@ -118,9 +118,14 @@ def run_warcer_by_cdx(args, cmdline): if index_limit > 0: index_lines = index_lines[:index_limit] - for record in tqdm(fetch_records_from_index( + records_gen = fetch_records_from_index( index_lines=index_lines, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel - ), desc="Fetch and write WARC", total=len(index_lines)): + ) + # records_gen = tqdm(fetch_records_from_index( + # index_lines=index_lines, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel + # ), desc="Fetch and write WARC", total=len(index_lines)) + + for record in records_gen: writer.write_record(record) records_n += 1 diff --git a/tests/test_warc_by_cdx.py b/tests/test_warc_by_cdx.py index 7a1efe4..baffba5 100644 --- a/tests/test_warc_by_cdx.py +++ b/tests/test_warc_by_cdx.py @@ -57,7 +57,7 @@ def test_cli_warc_by_cdx_over_http(tmpdir, caplog): assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog) def test_cli_warc_by_cdx_over_http_in_parallel(tmpdir, caplog): - assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog, extra_args=" --parallel 2") + assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog, extra_args=" --parallel 3") @requires_aws_s3 def test_cli_warc_by_cdx_over_s3(tmpdir, caplog): @@ -67,6 +67,9 @@ def test_cli_warc_by_cdx_over_s3(tmpdir, caplog): def test_cli_warc_by_cdx_over_s3_to_s3(tmpdir, caplog): assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog) +@requires_aws_s3 +def test_cli_warc_by_cdx_over_s3_to_s3_in_parallel(tmpdir, caplog): + assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog, extra_args=" --parallel 3") def test_get_caputure_objects_from_index(): From 5154e70e59caaa2b922a95ea29a02974a4ed9109 Mon Sep 17 00:00:00 2001 From: malteos Date: Mon, 1 Sep 2025 15:35:21 +0000 Subject: [PATCH 17/23] Added aioboto3 implementation for warcer --- cdx_toolkit/warcer_by_cdx/__init__.py | 240 +++-------- cdx_toolkit/warcer_by_cdx/aioboto3_utils.py | 206 ++++++++++ cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py | 400 +++++++++++++++++++ cdx_toolkit/warcer_by_cdx/aioboto3_writer.py | 106 +++++ cdx_toolkit/warcer_by_cdx/args.py | 3 + cdx_toolkit/warcer_by_cdx/cdx_utils.py | 91 +++++ cdx_toolkit/warcer_by_cdx/fsspec_warcer.py | 162 ++++++++ setup.py | 2 +- tests/test_warc_by_cdx.py | 12 +- tests/test_warc_by_cdx_aioboto3.py | 93 +++++ 10 files changed, 1130 insertions(+), 185 deletions(-) create mode 100644 cdx_toolkit/warcer_by_cdx/aioboto3_utils.py create mode 100644 cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py create mode 100644 cdx_toolkit/warcer_by_cdx/aioboto3_writer.py create mode 100644 cdx_toolkit/warcer_by_cdx/cdx_utils.py create mode 100644 cdx_toolkit/warcer_by_cdx/fsspec_warcer.py create mode 100644 tests/test_warc_by_cdx_aioboto3.py diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index 2e69335..e98a07c 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -1,22 +1,14 @@ -from io import BytesIO -import json import logging -import os -from pathlib import Path import sys -from typing import Iterable +import time +from typing import Literal import fsspec -from concurrent.futures import ThreadPoolExecutor, as_completed - - -from tqdm import tqdm -from warcio import WARCWriter -from warcio.recordloader import ArcWarcRecord -import cdx_toolkit from cdx_toolkit.utils import get_version, setup +from cdx_toolkit.warcer_by_cdx.aioboto3_warcer import filter_warc_by_cdx_via_aioboto3 +from cdx_toolkit.warcer_by_cdx.fsspec_warcer import filter_warc_by_cdx_via_fsspec logger = logging.getLogger(__name__) @@ -33,8 +25,15 @@ def run_warcer_by_cdx(args, cmdline): - Write to new WARC file with metadata including resource record with index. - The CDX resource record is written to the WARC directly before for response records that matches to the CDX. """ + logger.info("Filtering WARC files based on CDX") + cdx, kwargs = setup(args) + # Start timing + start_time = time.time() + + implementation = args.implementation + write_index_as_record = args.write_index_as_record ispartof = args.prefix if args.subprefix: @@ -51,9 +50,9 @@ def run_warcer_by_cdx(args, cmdline): if args.operator: info["operator"] = args.operator - kwargs_writer = {} + writer_kwargs = {} if "size" in kwargs: - kwargs_writer["size"] = kwargs["size"] + writer_kwargs["size"] = kwargs["size"] del kwargs["size"] n_parallel = args.parallel @@ -65,19 +64,58 @@ def run_warcer_by_cdx(args, cmdline): # make sure the base dir exists prefix_fs.makedirs(prefix_fs._parent(prefix_fs_path), exist_ok=True) - writer = cdx_toolkit.warc.get_writer( - str(prefix_path), args.subprefix, info, **kwargs_writer + index_paths = get_index_paths( + args.index_path, + args.index_glob, ) - # Prepare index paths - index_fs, index_fs_path = fsspec.url_to_fs(args.index_path) + if implementation == "fsspec": + records_n = filter_warc_by_cdx_via_fsspec( + index_paths=index_paths, + prefix_path=prefix_path, + writer_info=info, + writer_subprefix=args.subprefix, + write_index_as_record=write_index_as_record, + limit = limit, + log_every_n = log_every_n, + warc_download_prefix = cdx.warc_download_prefix, + n_parallel=n_parallel, + writer_kwargs=writer_kwargs, + ) + elif implementation == "aioboto3": + records_n = filter_warc_by_cdx_via_aioboto3( + index_paths=index_paths, + prefix_path=prefix_path, + writer_info=info, + writer_subprefix=args.subprefix, + write_index_as_record=write_index_as_record, + limit = limit, + log_every_n = log_every_n, + warc_download_prefix = cdx.warc_download_prefix, + n_parallel=n_parallel, + writer_kwargs=writer_kwargs, + ) + else: + raise ValueError("Invalid implementation") + + logger.info("WARC records extracted: %i", records_n) + + # End timing and log execution time + end_time = time.time() + execution_time = end_time - start_time - if args.index_glob is None: + logger.info(f"Script execution time: {execution_time:.3f} seconds") + +def get_index_paths(index_path: str, index_glob: str | None = None) -> list[str]: + if index_glob is None: # Read from a single index - index_paths = [args.index_path] + index_paths = [index_path] else: + # Prepare index paths + index_fs, index_fs_path = fsspec.url_to_fs(index_path) + # Fetch multiple indicies via glob - full_glob = index_fs_path + args.index_glob + full_glob = index_fs_path + index_glob logger.info("glob pattern from %s (%s)", full_glob, index_fs.protocol) @@ -88,163 +126,7 @@ def run_warcer_by_cdx(args, cmdline): ) if not index_paths: - logger.error("no index files found") + logger.error("no index files found via glob") sys.exit(1) - # Iterate over index files - records_n = 0 - for index_path in index_paths: - logger.info("filtering based on CDX from %s (%s)", index_path, index_fs.protocol) - - # Read index completely (for the WARC resource record) - index = get_index_from_path(index_path, index_fs=index_fs) - - if not index: - # skip empty indicies - continue - - # Write index as record to WARC - # TODO at what position should the resource records be written? - if write_index_as_record: - logger.info("Writing CDX as resource record to WARC ... ") - writer.write_record(get_index_record(index, index_path)) - - logger.info("CDX resource recorded added") - - # The index file holds all the information to download specific objects (file, offset, length etc.) - index_lines = index.splitlines() - index_limit = limit - records_n - - if index_limit > 0: - index_lines = index_lines[:index_limit] - - records_gen = fetch_records_from_index( - index_lines=index_lines, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel - ) - # records_gen = tqdm(fetch_records_from_index( - # index_lines=index_lines, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel - # ), desc="Fetch and write WARC", total=len(index_lines)) - - for record in records_gen: - writer.write_record(record) - records_n += 1 - - if (records_n % log_every_n) == 0: - logger.info(f"Record progress: {records_n:,} from {index_path}") - - if limit > 0 and records_n >= limit: - # stop index loop - logger.info("Limit reached") - break - - logger.info("Filtering completed (index file: %s)", index_path) - - writer.close() - - logger.info("WARC records extracted: %i", records_n) - - -def get_index_from_path(index_path: str | Path, index_fs: None | fsspec.AbstractFileSystem = None) -> str: - """Fetch (and decompress) index content as string from local or remote path.""" - logger.info("Fetching index from %s ...", index_path) - if index_fs is None: - index_fs, index_fs_path = fsspec.url_to_fs(index_path) - else: - index_fs_path = index_path - - compression = "gzip" if index_fs_path.endswith(".gz") else None - - with index_fs.open(index_fs_path, "rt", compression=compression) as f: - return f.read() - - -def get_index_record( - index: str, index_path: str, encoding: str = "utf-8" -) -> ArcWarcRecord: - """Build WARC resource record for index.""" - return WARCWriter(None).create_warc_record( - uri=index_path, # TODO this could be a local / internal path - record_type="resource", - payload=BytesIO(index.encode(encoding)), - http_headers=None, - warc_content_type="application/cdx", - warc_headers_dict=None, # TODO should we add some other metadata headers? - ) - -def fetch_single_record(obj): - """Fetch a single WARC record with error handling.""" - url = obj["url"] - timestamp = obj["timestamp"] - - try: - record = obj.fetch_warc_record() - if obj.is_revisit(): - logger.warning( - "revisit record being resolved for url %s %s", url, timestamp - ) - return record - except RuntimeError: # pragma: no cover - logger.warning( - "skipping capture for RuntimeError 404: %s %s", url, timestamp - ) - return None - -def fetch_records_from_index( - index_lines: list[str], warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 -) -> Iterable[ArcWarcRecord]: - """Fetch WARC records based on CDX index.""" - - if n_parallel <= 1: - # Sequential processing - for obj in generate_caputure_objects_from_index( - index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, - ): - record = fetch_single_record(obj) - if record is not None: - yield record - else: - # Parallel processing - logger.info(f"Fetch records in parallel with {n_parallel=}") - objects = list(generate_caputure_objects_from_index( - index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, - )) - - with ThreadPoolExecutor(max_workers=n_parallel) as executor: - # Submit all tasks - future_to_obj = {executor.submit(fetch_single_record, obj): obj for obj in objects} - - # Yield results as they complete - for future in as_completed(future_to_obj): - record = future.result() - if record is not None: - yield record - -def generate_caputure_objects_from_index( - index_lines: list[str], warc_download_prefix=None, limit: int = 0, progress_bar: bool = False -) -> Iterable[cdx_toolkit.CaptureObject]: - """Read CDX index and generate CaptureObject objects.""" - - if limit > 0: - index_lines = index_lines[:limit] - - if progress_bar: - index_lines = tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)) - - for i, line in enumerate(index_lines, 1): - cols = line.split(" ", maxsplit=2) - - if len(cols) == 3: - # TODO can there be a different format? - # surt, timestamp, json_data = cols - # - # CC seems to not follow the specification from https://iipc.github.io/warc-specifications/specifications/cdx-format/cdx-2015/ - # > The default first line of a CDX file is: - # > CDX A b e a m s c k r V v D d g M n - data = json.loads(cols[2]) - data["timestamp"] = cols[1] - else: - raise ValueError(f"Cannot parse line: {line}") - - yield cdx_toolkit.CaptureObject( - data=data, wb=None, warc_download_prefix=warc_download_prefix - ) + return index_paths diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py new file mode 100644 index 0000000..ebc6762 --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py @@ -0,0 +1,206 @@ +import asyncio +import logging +import time +from dataclasses import dataclass + +import logging + +from botocore.exceptions import ClientError, EndpointConnectionError + +_STOP = object() + +logger = logging.getLogger(__name__) + + +@dataclass +class ThroughputTracker: + """Track throughput metrics for fetchers and consumers.""" + + start_time: float = 0.0 + total_bytes: int = 0 + total_requests: int = 0 + + def start(self): + self.start_time = time.time() + + def add_bytes(self, bytes_count: int): + self.total_bytes += bytes_count + self.total_requests += 1 + + def get_stats(self) -> dict: + elapsed = time.time() - self.start_time + if elapsed <= 0: + return { + "elapsed": 0, + "bytes_per_sec": 0, + "mb_per_sec": 0, + "requests_per_sec": 0, + } + + return { + "elapsed": elapsed, + "total_bytes": self.total_bytes, + "total_requests": self.total_requests, + "bytes_per_sec": self.total_bytes / elapsed, + "mb_per_sec": (self.total_bytes / elapsed) / (1024 * 1024), + "requests_per_sec": self.total_requests / elapsed, + } + + +@dataclass(frozen=True) +class RangeJob: + bucket: str + key: str + offset: int + length: int + + +@dataclass(frozen=True) +class RangePayload: + job: RangeJob + data: bytes + + +def _backoff(attempt: int, base_backoff_seconds: float) -> float: + base = base_backoff_seconds * (2 ** (attempt - 1)) + # jitter ±20% + import os as _os + + return max(0.05, base * (0.8 + 0.4 * _os.urandom(1)[0] / 255)) + + +def parse_s3_uri(uri: str) -> tuple[str, str]: + if not uri.startswith("s3://"): + raise ValueError(f"Not an S3 URI: {uri}") + rest = uri[5:] + i = rest.find("/") + if i <= 0 or i == len(rest) - 1: + raise ValueError(f"Malformed S3 URI: {uri}") + return rest[:i], rest[i + 1 :] + + +async def with_retries( + coro_factory, *, op_name: str, max_attempts: int, base_backoff_seconds: float +): + last_exc = None + for attempt in range(1, max_attempts + 1): + try: + return await coro_factory() + except (TimeoutError, ClientError, EndpointConnectionError) as exc: + last_exc = exc + if attempt >= max_attempts: + logger.error("%s failed after %d attempts: %r", op_name, attempt, exc) + break + sleep_s = _backoff(attempt, base_backoff_seconds) + logger.warning( + "%s failed (attempt %d/%d) – retrying in %.2fs", + op_name, + attempt, + max_attempts, + sleep_s, + ) + await asyncio.sleep(sleep_s) + raise last_exc + + +async def get_object_stream( + s3, bucket: str, key: str, max_attempts: int, base_backoff_seconds: float +): + resp = await with_retries( + lambda: s3.get_object(Bucket=bucket, Key=key), + op_name=f"get_object {bucket}/{key}", + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + ) + return resp["Body"] + + +async def ranged_get_bytes( + s3, + bucket: str, + key: str, + offset: int, + length: int, + max_attempts: int, + base_backoff_seconds: float, +) -> bytes: + end = offset + length - 1 # inclusive + resp = await with_retries( + lambda: s3.get_object(Bucket=bucket, Key=key, Range=f"bytes={offset}-{end}"), + op_name=f"ranged_get {bucket}/{key}[{offset}:{end}]", + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + ) + return await resp["Body"].read() + + +async def mpu_create( + s3, + bucket: str, + key: str, + *, + content_type: str | None, + max_attempts: int, + base_backoff_seconds: float, +): + kwargs = {"Bucket": bucket, "Key": key} + if content_type: + kwargs["ContentType"] = content_type + resp = await with_retries( + lambda: s3.create_multipart_upload(**kwargs), + op_name=f"create_multipart_upload {bucket}/{key}", + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + ) + return resp["UploadId"] + + +async def mpu_upload_part( + s3, + bucket: str, + key: str, + upload_id: str, + part_number: int, + body: bytes, + max_attempts: int, + base_backoff_seconds: float, +) -> str: + resp = await with_retries( + lambda: s3.upload_part( + Bucket=bucket, + Key=key, + UploadId=upload_id, + PartNumber=part_number, + Body=body, + ), + op_name=f"upload_part {bucket}/{key}#{part_number}", + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + ) + return resp["ETag"] + + +async def mpu_complete( + s3, + bucket: str, + key: str, + upload_id: str, + parts: list[dict], + max_attempts: int, + base_backoff_seconds: float, +): + await with_retries( + lambda: s3.complete_multipart_upload( + Bucket=bucket, Key=key, UploadId=upload_id, MultipartUpload={"Parts": parts} + ), + op_name=f"complete_multipart_upload {bucket}/{key}", + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + ) + + +async def mpu_abort(s3, bucket: str, key: str, upload_id: str): + try: + await s3.abort_multipart_upload(Bucket=bucket, Key=key, UploadId=upload_id) + except Exception: + logger.exception("Failed to abort MPU %s on %s/%s", upload_id, bucket, key) diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py new file mode 100644 index 0000000..f2f21b7 --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py @@ -0,0 +1,400 @@ +import asyncio +from io import BytesIO +import logging + +import asyncio +import logging + +import aioboto3 +from botocore.config import Config +from warcio import WARCWriter + +from cdx_toolkit.warcer_by_cdx.aioboto3_utils import ( + _STOP, + RangeJob, + RangePayload, + ThroughputTracker, + parse_s3_uri, + ranged_get_bytes, +) +from cdx_toolkit.warcer_by_cdx.aioboto3_writer import ShardWriter +from cdx_toolkit.warcer_by_cdx.cdx_utils import ( + read_cdx_index_from_s3, +) + + +logger = logging.getLogger(__name__) + + +def filter_warc_by_cdx_via_aioboto3( + index_paths: list[str], + prefix_path: str, + writer_info: dict, + writer_subprefix: str | None = None, + write_index_as_record: bool = False, + limit: int = 0, + log_every_n: int = 1000, + warc_download_prefix: str | None = None, + n_parallel: int = 1, + writer_kwargs: dict | None = None, +) -> int: + + try: + return asyncio.run( + filter_warc_by_cdx_via_aioboto3_async( + index_paths=index_paths, + prefix_path=prefix_path, + writer_info=writer_info, + writer_subprefix=writer_subprefix, + write_index_as_record=write_index_as_record, + limit=limit, + log_every_n=log_every_n, + warc_download_prefix=warc_download_prefix, + writer_kwargs=writer_kwargs, + n_parallel=n_parallel, + ) + ) + except KeyboardInterrupt: + logger.warning("Interrupted by user.") + + return -1 + + +async def filter_warc_by_cdx_via_aioboto3_async( + index_paths: list[str], + prefix_path: str, + writer_info: dict, + writer_subprefix: str | None = None, + write_index_as_record: bool = False, + limit: int = 0, + log_every_n: int = 1000, + warc_download_prefix: str | None = None, + n_parallel: int = 1, + writer_kwargs: dict | None = None, + max_attempts: int = 5, + key_queue_size: int = 1000, + item_queue_size: int = 200, + base_backoff_seconds=0.5, +) -> int: + n_records = 0 + fetcher_to_consumer_ratio = 6 + num_fetchers = n_parallel + num_consumers = max(int(num_fetchers / fetcher_to_consumer_ratio), 1) + + key_queue: asyncio.Queue = asyncio.Queue(maxsize=key_queue_size) + item_queue: asyncio.Queue = asyncio.Queue(maxsize=item_queue_size) + + boto_cfg = Config( + region_name="us-east-1", + retries={"max_attempts": max(2, max_attempts), "mode": "standard"}, + connect_timeout=10, + read_timeout=120, + ) + + if write_index_as_record: + raise NotImplementedError + + session = aioboto3.Session() + + async with session.client("s3", config=boto_cfg) as s3: + # Stage 1 + logger.info( + "Starting lister, %d fetchers, %d consumers", num_fetchers, num_consumers + ) + lister_task = asyncio.create_task( + lister_from_index( + key_queue=key_queue, + index_paths=index_paths, + warc_download_prefix=warc_download_prefix, + num_fetchers=num_fetchers, + limit=limit, + ) + ) + + # Stage 2 + fetchers = [ + asyncio.create_task( + fetcher( + fetcher_id=i, + key_queue=key_queue, + item_queue=item_queue, + s3=s3, + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + log_every_n=log_every_n, + ) + ) + for i in range(num_fetchers) + ] + + # Stage 3 + consumers = [ + asyncio.create_task( + consumer( + consumer_id=i, + item_queue=item_queue, + s3=s3, + # shard_name_prefix=shard_name_prefix, + # args.shard_extension, + # args.dest_prefix, + # args.dest_bucket, + # args.content_type, + # min_part_size=, + prefix_path=prefix_path, + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + write_index_as_record=write_index_as_record, + writer_info=writer_info, + writer_subprefix=writer_subprefix, + writer_kwargs=writer_kwargs, + log_every_n=log_every_n, + gzip=index_paths[0].endswith(".gz") if index_paths else False, + ) + ) + for i in range(num_consumers) + ] + + await lister_task + logger.info("Lister completed, waiting for fetchers to finish") + + await asyncio.gather(*fetchers) + logger.info("All fetchers completed") + + # Send stop signals to consumers + for _ in range(num_consumers): + await item_queue.put(_STOP) + + consumer_results = await asyncio.gather(*consumers) + n_records = sum([result["stats"]["total_requests"] for result in consumer_results]) + + logger.info("All consumers completed") + + return n_records + + +async def lister_from_index( + key_queue: asyncio.Queue, + index_paths: list[str], + warc_download_prefix: str, + num_fetchers: int, + limit: int = 0, +): + """Stage 1: stream the index, parse lines -> RangeJob -> key_queue.""" + + logger.info("Range index limit: %i", limit) + count = 0 + + if not index_paths: + logger.error("No index paths provided!") + + else: + + # Iterate over index files + for index_path in index_paths: + # Fetch range queries from index + try: + for warc_url, offset, length in read_cdx_index_from_s3( + index_path, warc_download_prefix=warc_download_prefix + ): + # Convert the CDX record back to a RangeJob + bucket, key = parse_s3_uri(warc_url) + job = RangeJob(bucket=bucket, key=key, offset=offset, length=length) + await key_queue.put(job) + count += 1 + + if limit > 0 and count >= limit: + logger.warning("Index limit reached at %i", count) + break + + except Exception as e: + logger.error("Failed to read CDX index from %s: %s", index_path, e) + + if limit > 0 and count >= limit: + logger.warning("Limit reached at %i", count) + break + + # signal fetchers to stop + for _ in range(num_fetchers): + await key_queue.put(_STOP) + + logger.info("Lister enqueued %d jobs from %s", count, index_path) + + +async def fetcher( + fetcher_id: int, + key_queue: asyncio.Queue, + item_queue: asyncio.Queue, + s3, + max_attempts: int, + base_backoff_seconds: float, + log_every_n: int = 1000, +): + """Stage 2: ranged GET per job -> enqueue RangePayload.""" + tracker = ThroughputTracker() + tracker.start() + counter = 0 + + while True: + job = await key_queue.get() + try: + if job is _STOP: + stats = tracker.get_stats() + logger.info( + "Fetcher %d stopping. Stats: %.1fs, %d requests, %.1f MB, " + "%.2f MB/s, %.2f req/s", + fetcher_id, + stats["elapsed"], + stats["total_requests"], + stats["total_bytes"] / (1024 * 1024), + stats["mb_per_sec"], + stats["requests_per_sec"], + ) + break # Exit loop, but still execute finally block + assert isinstance(job, RangeJob) + data = await ranged_get_bytes( + s3, + job.bucket, + job.key, + job.offset, + job.length, + max_attempts, + base_backoff_seconds, + ) + tracker.add_bytes(len(data)) + counter += 1 + + # Log progress every 10 items + if counter % log_every_n == 0: + stats = tracker.get_stats() + logger.info( + "Fetcher %d: %d items, %.1f MB, %.2f MB/s, %.2f req/s", + fetcher_id, + counter, + stats["total_bytes"] / (1024 * 1024), + stats["mb_per_sec"], + stats["requests_per_sec"], + ) + + await item_queue.put(RangePayload(job=job, data=data)) + except Exception: + logger.exception( + "Fetcher %d failed on %s/%s [%d,%d]", + fetcher_id, + getattr(job, "bucket", "?"), + getattr(job, "key", "?"), + getattr(job, "offset", -1), + getattr(job, "length", -1), + ) + finally: + key_queue.task_done() + + +async def consumer( + consumer_id: int, + item_queue: asyncio.Queue, + s3, + # shard_name_prefix: str, + # shard_extension: str, + # dest_prefix: str, + # dest_bucket: str, + # content_type: str | None, + # min_part_size: int, + max_attempts: int, + base_backoff_seconds: float, + prefix_path: str, + writer_info: dict, + writer_subprefix: str | None = None, + write_index_as_record: bool = False, + writer_kwargs: dict | None = None, + warc_version: str = "1.0", + log_every_n: int = 1000, + gzip: bool = False, +): + """Stage 3: each consumer owns ONE shard MPU and appends ranges to it.""" + + dest_bucket, dest_prefix = parse_s3_uri(prefix_path) + + min_part_size = 5 * 1024 * 1024 # 5 MiB + content_type = None + + file_name = dest_prefix + '-' + if writer_subprefix is not None: + file_name += writer_subprefix + '-' + file_name += '{:06d}'.format(consumer_id) + '.extracted.warc' + + if gzip: + file_name += '.gz' + + writer = ShardWriter( + file_name, + dest_bucket, + content_type, + min_part_size, + max_attempts, + base_backoff_seconds, + ) + tracker = ThroughputTracker() + tracker.start() + counter = 0 + + # Initialize writer + await writer.start(s3) + + # Write WARC header + buffer = BytesIO() + warc_writer = WARCWriter(buffer, gzip=gzip, warc_version=warc_version) + warcinfo = warc_writer.create_warcinfo_record(file_name, writer_info) + warc_writer.write_record(warcinfo) + + await writer.write(s3, buffer.getvalue()) + + try: + while True: + item = await item_queue.get() + counter += 1 + try: + if item is _STOP: + stats = tracker.get_stats() + logger.info( + "Consumer %d stopping. Stats: %.1fs, %d items, %.1f MB written, " + "%.2f MB/s write speed", + consumer_id, + stats["elapsed"], + stats["total_requests"], + stats["total_bytes"] / (1024 * 1024), + stats["mb_per_sec"], + ) + should_stop = True + else: + should_stop = False + assert isinstance(item, RangePayload) + await writer.write(s3, item.data) + tracker.add_bytes(len(item.data)) + + # Log progress every 10 items + if counter % log_every_n == 0: + stats = tracker.get_stats() + logger.info( + "Consumer %d: %d items, %.1f MB written, %.2f MB/s", + consumer_id, + counter, + stats["total_bytes"] / (1024 * 1024), + stats["mb_per_sec"], + ) + except Exception: + logger.exception( + "Consumer %d failed on %s", consumer_id, getattr(item, "job", None) + ) + should_stop = False + finally: + item_queue.task_done() + + if should_stop: + break + finally: + await writer.close(s3) + + return { + 'consumer_id': consumer_id, + 'stats': tracker.get_stats() + } diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py new file mode 100644 index 0000000..1599174 --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py @@ -0,0 +1,106 @@ +import logging + +from cdx_toolkit.warcer_by_cdx.aioboto3_utils import ( + mpu_abort, + mpu_complete, + mpu_create, + mpu_upload_part, +) + +logger = logging.getLogger(__name__) + + +class ShardWriter: + """Manages one MPU: buffers bytes, uploads >=5 MiB parts, completes on close.""" + + def __init__( + self, + shard_key: str, + dest_bucket: str, + content_type: str | None, + min_part_size: int, + max_attempts: int, + base_backoff_seconds: float, + ): + self.shard_key = shard_key + self.dest_bucket = dest_bucket + self.content_type = content_type + self.min_part_size = min_part_size + self.max_attempts = max_attempts + self.base_backoff_seconds = base_backoff_seconds + self.upload_id: str | None = None + self.part_number = 1 + self.parts: list[dict] = [] + self.buffer = bytearray() + + async def start(self, s3): + self.upload_id = await mpu_create( + s3, + self.dest_bucket, + self.shard_key, + content_type=self.content_type, + max_attempts=self.max_attempts, + base_backoff_seconds=self.base_backoff_seconds, + ) + logger.info("Started MPU for %s (UploadId=%s)", self.shard_key, self.upload_id) + + async def _flush_full_parts(self, s3): + while len(self.buffer) >= self.min_part_size: + chunk = self.buffer[: self.min_part_size] + del self.buffer[: self.min_part_size] + etag = await mpu_upload_part( + s3, + self.dest_bucket, + self.shard_key, + self.upload_id, + self.part_number, + bytes(chunk), + self.max_attempts, + self.base_backoff_seconds, + ) + self.parts.append({"PartNumber": self.part_number, "ETag": etag}) + self.part_number += 1 + + async def write(self, s3, data: bytes): + # self.buffer.extend(transform(data)) + # TODO write proper WARC record? + self.buffer.extend(data) + await self._flush_full_parts(s3) + + async def close(self, s3): + try: + if self.buffer: + etag = await mpu_upload_part( + s3, + self.dest_bucket, + self.shard_key, + self.upload_id, + self.part_number, + bytes(self.buffer), + self.max_attempts, + self.base_backoff_seconds, + ) + self.parts.append({"PartNumber": self.part_number, "ETag": etag}) + self.part_number += 1 + self.buffer.clear() + + if self.parts: + await mpu_complete( + s3, + self.dest_bucket, + self.shard_key, + self.upload_id, + self.parts, + self.max_attempts, + self.base_backoff_seconds, + ) + logger.info( + "Completed MPU for %s with %d parts.", self.shard_key, len(self.parts) + ) + except Exception: + logger.exception( + "Completing MPU failed for %s; attempting abort.", self.shard_key + ) + if self.upload_id: + await mpu_abort(s3, self.dest_bucket, self.shard_key, self.upload_id) + raise diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index e64d157..d81b3c1 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -52,4 +52,7 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): default=1, help="Number of parallel workers for fetchin WARC records (default: 1, sequential processing)", ) + parser.add_argument( + "--implementation", type=str, default="fsspec", help="implementation (fsspec, aioboto3)" + ) return parser diff --git a/cdx_toolkit/warcer_by_cdx/cdx_utils.py b/cdx_toolkit/warcer_by_cdx/cdx_utils.py new file mode 100644 index 0000000..869fbe3 --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/cdx_utils.py @@ -0,0 +1,91 @@ +import json +from pathlib import Path + +from io import BytesIO +from typing import Iterable + +import fsspec +import logging + +from warcio import WARCWriter +from warcio.recordloader import ArcWarcRecord + + +logger = logging.getLogger(__name__) + + +def get_index_as_string_from_path(index_path: str | Path, index_fs: None | fsspec.AbstractFileSystem = None) -> str: + """Fetch (and decompress) index content as string from local or remote path.""" + logger.info("Fetching index from %s ...", index_path) + if index_fs is None: + index_fs, index_fs_path = fsspec.url_to_fs(index_path) + else: + index_fs_path = index_path + + compression = "gzip" if index_fs_path.endswith(".gz") else None + + with index_fs.open(index_fs_path, "rt", compression=compression) as f: + return f.read() + + +def get_index_record( + index: str, index_path: str, encoding: str = "utf-8" +) -> ArcWarcRecord: + """Build WARC resource record for index.""" + return WARCWriter(None).create_warc_record( + uri=index_path, # TODO this could be a local / internal path + record_type="resource", + payload=BytesIO(index.encode(encoding)), + http_headers=None, + warc_content_type="application/cdx", + warc_headers_dict=None, # TODO should we add some other metadata headers? + ) + + + + +def read_cdx_line(line: str, warc_download_prefix: str) -> tuple[str, int, int]: + cols = line.split(" ", maxsplit=2) + + if len(cols) == 3: + # TODO can there be a different format? + # surt, timestamp, json_data = cols + # + # CC seems to not follow the specification from https://iipc.github.io/warc-specifications/specifications/cdx-format/cdx-2015/ + # > The default first line of a CDX file is: + # > CDX A b e a m s c k r V v D d g M n + data = json.loads(cols[2]) + data["timestamp"] = cols[1] + else: + raise ValueError(f"Cannot parse line: {line}") + + filename = data["filename"] + offset = int(data["offset"]) + length = int(data["length"]) + + warc_url = warc_download_prefix + "/" + filename + + return (warc_url, offset, length) + + + +def read_cdx_index_from_s3(s3_path: str, warc_download_prefix: str) -> Iterable[tuple[str, int, int]]: + """ + Read CDX records from a gzipped S3 file. + """ + # if not s3_path.startswith("s3://"): + # raise ValueError(f"Invalid S3 path: {s3_path}") + + logger.info("Reading CDX from %s", s3_path) + + with fsspec.open(s3_path, "rt", compression="gzip" if s3_path.endswith(".gz") else None) as f: + for line in f: + try: + yield read_cdx_line(line, warc_download_prefix) + except Exception: + # Skip malformed lines + logger.error("Invalid CDX line: %s", line) + continue + + logger.info(f"CDX completed from %s", s3_path) + \ No newline at end of file diff --git a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py new file mode 100644 index 0000000..dc3eec1 --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py @@ -0,0 +1,162 @@ + +import json +import logging +from typing import Iterable + +import cdx_toolkit +from concurrent.futures import ThreadPoolExecutor, as_completed + +from warcio.recordloader import ArcWarcRecord + +from cdx_toolkit.warcer_by_cdx.cdx_utils import get_index_as_string_from_path, get_index_record + + +logger = logging.getLogger(__name__) + +def filter_warc_by_cdx_via_fsspec( + index_paths: list[str], + prefix_path: str, + writer_info: dict, + writer_subprefix: str | None = None, + write_index_as_record: bool = False, + limit: int = 0, + log_every_n: int = 1000, + warc_download_prefix: str | None = None, + n_parallel: int = 1, + writer_kwargs: dict | None = None, + ) -> int: + + writer = cdx_toolkit.warc.get_writer( + prefix_path, writer_subprefix, writer_info, **(writer_kwargs if writer_kwargs else {}), + ) + + # Iterate over index files + records_n = 0 + for index_path in index_paths: + logger.info("filtering based on CDX from %s", index_path) + + # Read index completely (for the WARC resource record) + index = get_index_as_string_from_path(index_path) + + if not index: + # skip empty indicies + continue + + # Write index as record to WARC + # TODO at what position should the resource records be written? + if write_index_as_record: + logger.info("Writing CDX as resource record to WARC ... ") + writer.write_record(get_index_record(index, index_path)) + + logger.info("CDX resource recorded added") + + # The index file holds all the information to download specific objects (file, offset, length etc.) + index_lines = index.splitlines() + index_limit = limit - records_n + + if index_limit > 0: + index_lines = index_lines[:index_limit] + + records_gen = fetch_records_from_index( + index_lines=index_lines, warc_download_prefix=warc_download_prefix, n_parallel=n_parallel + ) + # records_gen = tqdm(fetch_records_from_index( + # index_lines=index_lines, warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel + # ), desc="Fetch and write WARC", total=len(index_lines)) + + for record in records_gen: + writer.write_record(record) + records_n += 1 + + if (records_n % log_every_n) == 0: + logger.info(f"Record progress: {records_n:,} from {index_path}") + + if limit > 0 and records_n >= limit: + # stop index loop + logger.info("Limit reached") + break + + logger.info("Filtering completed (index file: %s)", index_path) + + writer.close() + + return records_n + + +def fetch_single_record(obj): + """Fetch a single WARC record with error handling.""" + url = obj["url"] + timestamp = obj["timestamp"] + + try: + record = obj.fetch_warc_record() + if obj.is_revisit(): + logger.warning( + "revisit record being resolved for url %s %s", url, timestamp + ) + return record + except RuntimeError: # pragma: no cover + logger.warning( + "skipping capture for RuntimeError 404: %s %s", url, timestamp + ) + return None + +def fetch_records_from_index( + index_lines: list[str], warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 +) -> Iterable[ArcWarcRecord]: + """Fetch WARC records based on CDX index.""" + + if n_parallel <= 1: + # Sequential processing + for obj in generate_caputure_objects_from_index( + index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, + ): + record = fetch_single_record(obj) + if record is not None: + yield record + else: + # Parallel processing + logger.info(f"Fetch records in parallel with {n_parallel=}") + objects = list(generate_caputure_objects_from_index( + index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, + )) + + with ThreadPoolExecutor(max_workers=n_parallel) as executor: + # Submit all tasks + future_to_obj = {executor.submit(fetch_single_record, obj): obj for obj in objects} + + # Yield results as they complete + for future in as_completed(future_to_obj): + record = future.result() + if record is not None: + yield record + +def generate_caputure_objects_from_index( + index_lines: list[str], warc_download_prefix=None, limit: int = 0, progress_bar: bool = False +) -> Iterable[cdx_toolkit.CaptureObject]: + """Read CDX index and generate CaptureObject objects.""" + + if limit > 0: + index_lines = index_lines[:limit] + + # if progress_bar: + # index_lines = tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)) + + for i, line in enumerate(index_lines, 1): + cols = line.split(" ", maxsplit=2) + + if len(cols) == 3: + # TODO can there be a different format? + # surt, timestamp, json_data = cols + # + # CC seems to not follow the specification from https://iipc.github.io/warc-specifications/specifications/cdx-format/cdx-2015/ + # > The default first line of a CDX file is: + # > CDX A b e a m s c k r V v D d g M n + data = json.loads(cols[2]) + data["timestamp"] = cols[1] + else: + raise ValueError(f"Cannot parse line: {line}") + + yield cdx_toolkit.CaptureObject( + data=data, wb=None, warc_download_prefix=warc_download_prefix + ) diff --git a/setup.py b/setup.py index 3eab3d2..7d5c205 100755 --- a/setup.py +++ b/setup.py @@ -8,7 +8,7 @@ packages = find_packages(include=['cdx_toolkit*']) # remember: keep requires synchronized with requirements.txt -requires = ['requests', 'warcio', 'fsspec[s3]', 'surt', 'tqdm'] +requires = ['requests', 'warcio', 'fsspec[s3]', 'aioboto3', 'surt', 'tqdm'] test_requirements = ['pytest', 'pytest-cov', 'boto3'] diff --git a/tests/test_warc_by_cdx.py b/tests/test_warc_by_cdx.py index baffba5..3ed7b64 100644 --- a/tests/test_warc_by_cdx.py +++ b/tests/test_warc_by_cdx.py @@ -3,9 +3,11 @@ import fsspec from cdx_toolkit.cli import main -from cdx_toolkit.warcer_by_cdx import ( +from cdx_toolkit.warcer_by_cdx.cdx_utils import ( + get_index_as_string_from_path, +) +from cdx_toolkit.warcer_by_cdx.fsspec_warcer import ( generate_caputure_objects_from_index, - get_index_from_path, ) import pytest from warcio.archiveiterator import ArchiveIterator @@ -75,7 +77,7 @@ def test_cli_warc_by_cdx_over_s3_to_s3_in_parallel(tmpdir, caplog): def test_get_caputure_objects_from_index(): index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" - for obj in generate_caputure_objects_from_index(get_index_from_path(index_path)): + for obj in generate_caputure_objects_from_index(get_index_as_string_from_path(index_path).splitlines()): break assert obj.data["length"] == "9754" @@ -101,10 +103,10 @@ def test_generate_caputure_objects_invalid_cdx_line(): def test_generate_caputure_objects_with_limit(): # Test limit functionality in get_caputure_objects_from_index index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" - index_content = get_index_from_path(index_path) + index_content = get_index_as_string_from_path(index_path) # Count objects with limit=2 - objects = list(generate_caputure_objects_from_index(index_content, limit=2)) + objects = list(generate_caputure_objects_from_index(index_content.splitlines(), limit=2)) # Should stop after 2 objects assert len(objects) == 2 diff --git a/tests/test_warc_by_cdx_aioboto3.py b/tests/test_warc_by_cdx_aioboto3.py new file mode 100644 index 0000000..abb678b --- /dev/null +++ b/tests/test_warc_by_cdx_aioboto3.py @@ -0,0 +1,93 @@ +from io import BytesIO +import os +from pathlib import Path + +import fsspec +from cdx_toolkit.cli import main +from cdx_toolkit.warcer_by_cdx.cdx_utils import ( + get_index_as_string_from_path, +) +from cdx_toolkit.warcer_by_cdx.fsspec_warcer import ( + generate_caputure_objects_from_index, +) +import pytest +from warcio.archiveiterator import ArchiveIterator + +from conftest import requires_aws_s3 + +from warcio import WARCWriter + +fixture_path = Path(__file__).parent / "data/warc_by_cdx" + + +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args=""): + # test cli and check output + index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + + # --write-index-as-record + + main( + args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --prefix {str(base_prefix)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix} {extra_args}""".split() + ) + + # Check log + assert "Limit reached" in caplog.text + + # Validate extracted WARC + warc_filename = "TEST_warc_by_index-000000.extracted.warc.gz" + warc_path = str(base_prefix) + "/" + warc_filename + resource_record = None + info_record = None + response_records = [] + response_contents = [] + + with fsspec.open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode("utf-8") + + if record.rec_type == 'response': + response_records.append(record) + response_contents.append(record.content_stream().read().decode("utf-8", errors="ignore")) + + # if record.rec_type == 'resource': + # resource_record = record + + assert len(response_records) == 10, "Invalid record count" + # assert resource_record is not None + # assert resource_record.length == 568010 + + assert "Catalogue en ligne Mission de France" in response_contents[0], "Invalid response content" + assert "dojo/dijit/themes/tundra/tundra" in response_contents[9], "Invalid response content" + assert info_record is not None + assert "operator: bob" in info_record, "Invalid WARC info" + + + +@requires_aws_s3 +def test_cli_warc_by_cdx_over_s3_to_s3_in_parallel_aioboto3(tmpdir, caplog): + assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog, extra_args=" --parallel 3 --implementation aioboto3") + + + +def test_warc_info(): + warc_version = "1.0" + gzip = False + file_handler = BytesIO() + filename = "foo.warc" + + info = { + "software": "pypi_cdx_toolkit/123", + "isPartOf": "bar", + "description": "warc extraction based on CDX generated with: xx", + "format": "WARC file version 1.0", + } + + writer = WARCWriter(file_handler, gzip=gzip, warc_version=warc_version) + warcinfo = writer.create_warcinfo_record(filename, info) + + writer.write_record(warcinfo) + + file_value = file_handler.getvalue().decode("utf-8") + + assert "pypi_cdx_toolkit/123" in file_value From d13f1a867d5cd0a83c5f0fe2f0b0cdf3a03ae88a Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 10 Sep 2025 15:50:38 +0000 Subject: [PATCH 18/23] Small clean up --- cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py | 12 +++--------- 1 file changed, 3 insertions(+), 9 deletions(-) diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py index f2f21b7..aa958d1 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py @@ -97,7 +97,7 @@ async def filter_warc_by_cdx_via_aioboto3_async( session = aioboto3.Session() async with session.client("s3", config=boto_cfg) as s3: - # Stage 1 + # Fetch file paths and ranges (offset, length) from index files logger.info( "Starting lister, %d fetchers, %d consumers", num_fetchers, num_consumers ) @@ -111,7 +111,7 @@ async def filter_warc_by_cdx_via_aioboto3_async( ) ) - # Stage 2 + # Read WARC records based on file paths and ranges fetchers = [ asyncio.create_task( fetcher( @@ -127,19 +127,13 @@ async def filter_warc_by_cdx_via_aioboto3_async( for i in range(num_fetchers) ] - # Stage 3 + # Write WARC records consumers = [ asyncio.create_task( consumer( consumer_id=i, item_queue=item_queue, s3=s3, - # shard_name_prefix=shard_name_prefix, - # args.shard_extension, - # args.dest_prefix, - # args.dest_bucket, - # args.content_type, - # min_part_size=, prefix_path=prefix_path, max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, From aa69c54fc5d3bcd4dee9f0b47757671daba58abd Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 17 Sep 2025 09:55:09 +0000 Subject: [PATCH 19/23] updated format and feat CI --- .github/workflows/ci-feat-warc-by-cdx.yaml | 56 +++++ .github/workflows/ci.yaml | 18 +- cdx_toolkit/filter_cdx/__init__.py | 105 +++++----- cdx_toolkit/filter_cdx/args.py | 38 ++-- cdx_toolkit/filter_cdx/matcher.py | 26 +-- cdx_toolkit/warcer_by_cdx/__init__.py | 65 +++--- cdx_toolkit/warcer_by_cdx/aioboto3_utils.py | 68 +++--- cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py | 109 +++++----- cdx_toolkit/warcer_by_cdx/aioboto3_writer.py | 17 +- cdx_toolkit/warcer_by_cdx/args.py | 48 ++--- cdx_toolkit/warcer_by_cdx/cdx_utils.py | 42 ++-- cdx_toolkit/warcer_by_cdx/fsspec_warcer.py | 100 ++++----- tests/__init__.py | 0 tests/test_filter_cdx.py | 154 -------------- tests/test_warc_by_cdx_aioboto3.py | 93 --------- tests/unit/test_warc.py | 33 +-- tests/warc_by_cdx/__init__.py | 0 tests/warc_by_cdx/test_filter_cdx.py | 165 +++++++++++++++ tests/{ => warc_by_cdx}/test_matcher.py | 194 +++++++++--------- tests/{ => warc_by_cdx}/test_warc_by_cdx.py | 134 ++++++++---- .../warc_by_cdx/test_warc_by_cdx_aioboto3.py | 105 ++++++++++ tests/warc_by_cdx/test_warc_from_fs.py | 53 +++++ tests/{ => warc_by_cdx}/test_warc_writer.py | 67 +++--- 23 files changed, 905 insertions(+), 785 deletions(-) create mode 100644 .github/workflows/ci-feat-warc-by-cdx.yaml create mode 100644 tests/__init__.py delete mode 100644 tests/test_filter_cdx.py delete mode 100644 tests/test_warc_by_cdx_aioboto3.py create mode 100644 tests/warc_by_cdx/__init__.py create mode 100644 tests/warc_by_cdx/test_filter_cdx.py rename tests/{ => warc_by_cdx}/test_matcher.py (58%) rename tests/{ => warc_by_cdx}/test_warc_by_cdx.py (51%) create mode 100644 tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py create mode 100644 tests/warc_by_cdx/test_warc_from_fs.py rename tests/{ => warc_by_cdx}/test_warc_writer.py (66%) diff --git a/.github/workflows/ci-feat-warc-by-cdx.yaml b/.github/workflows/ci-feat-warc-by-cdx.yaml new file mode 100644 index 0000000..80bb1bc --- /dev/null +++ b/.github/workflows/ci-feat-warc-by-cdx.yaml @@ -0,0 +1,56 @@ +name: CI (only feature) + +on: + push: + branches: + - main + pull_request: + branches: + - main + +jobs: + unit-tests: + runs-on: ${{ matrix.os }} + strategy: + fail-fast: false + max-parallel: 1 # avoids ever triggering a rate limit + matrix: + python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] + os: [ubuntu-latest] + EXTRA: [false] # used to force includes to get included + include: + - python-version: '3.12' + os: ubuntu-latest + EXTRA: true + env: + LOGLEVEL=DEBUG + - python-version: '3.8' + os: ubuntu-22.04 # oldest version on github actions + EXTRA: true + + steps: + - name: checkout + uses: actions/checkout@v4 + + - name: Set up Python ${{ matrix.python-version }} + uses: actions/setup-python@v5 + with: + python-version: ${{ matrix.python-version }} + + - name: Install setuptools on python 3.12+ + if: ${{ matrix.python-version >= '3.12' }} + run: | + pip install setuptools + + - name: Install cdx_toolkit + run: pip install .[test] + + - name: Run tests (feature only) + run: | + PYTHONPATH=. py.test -rA -s --doctest-modules --cov-report=xml --cov-append --cov cdx_toolkit tests/warc_by_cdx tests/unit -v -v + coverage report + + - name: Upload coverage to Codecov + uses: codecov/codecov-action@v4 + with: + token: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index c43c4ca..7f471c7 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -1,13 +1,15 @@ name: CI -on: - # runtime is erratic and up to an hour - push: - branches: - - main - pull_request: - branches: - - main +on: workflow_dispatch +# Disabled for this feature +# on: +# # runtime is erratic and up to an hour +# push: +# branches: +# - main +# pull_request: +# branches: +# - main jobs: unit-tests: diff --git a/cdx_toolkit/filter_cdx/__init__.py b/cdx_toolkit/filter_cdx/__init__.py index 6aa0999..75c9de0 100644 --- a/cdx_toolkit/filter_cdx/__init__.py +++ b/cdx_toolkit/filter_cdx/__init__.py @@ -22,7 +22,7 @@ def run_filter_cdx(args, cmdline: str): - All other index entries are discarded. - All input/output paths can be local or remote paths (S3, ...) and compressed (*.gz). """ - logger.info("Filtering CDX files based on whitelist") + logger.info('Filtering CDX files based on whitelist') # Start timing start_time = time.time() @@ -36,24 +36,22 @@ def run_filter_cdx(args, cmdline: str): ) validate_resolved_paths(output_paths, args.overwrite) - logger.info( - f"Found {len(input_paths)} files matching pattern: {args.input_base_path}/{args.input_glob}" - ) + logger.info(f'Found {len(input_paths)} files matching pattern: {args.input_base_path}/{args.input_glob}') # Load URL or SURT prefixes from file (each line is a surt) filter_fs, filter_fs_path = fsspec.url_to_fs(args.filter_file) - logger.info("Loading whitelist from %s", filter_fs_path) + logger.info('Loading whitelist from %s', filter_fs_path) if not filter_fs.exists(filter_fs_path): # Check that surts file exists - logger.error(f"Filter file not found: {filter_fs_path}") + logger.error(f'Filter file not found: {filter_fs_path}') sys.exit(1) - with filter_fs.open(filter_fs_path, "rt") as input_f: + with filter_fs.open(filter_fs_path, 'rt') as input_f: include_prefixes = [line.strip() for line in input_f.readlines()] - # Convert to SURT if filter file contains URLs - if args.filter_type == "url": - logger.info("Converting urls to surts ...") + # Convert to SURT if filter file contains URLs + if args.filter_type == 'url': + logger.info('Converting urls to surts ...') include_surt_prefixes = [surt(url) for url in include_prefixes] else: # Filter is already given as surts @@ -61,15 +59,13 @@ def run_filter_cdx(args, cmdline: str): # Create matcher based on selected approach matcher_classes = { - "trie": TrieMatcher, - "tuple": TupleMatcher, + 'trie': TrieMatcher, + 'tuple': TupleMatcher, } matcher = matcher_classes[args.matching_approach](include_surt_prefixes) - logger.info( - f"Loaded {len(include_surt_prefixes):,} filter entries using {args.matching_approach} approach" - ) + logger.info(f'Loaded {len(include_surt_prefixes):,} filter entries using {args.matching_approach} approach') # Process files in parallel or sequentially n_parallel = args.parallel @@ -77,66 +73,60 @@ def run_filter_cdx(args, cmdline: str): total_lines_n = 0 total_included_n = 0 total_errors_n = 0 - + if n_parallel > 1: # Parallel processing - logger.info("Parallel processes: %i", n_parallel) + logger.info('Parallel processes: %i', n_parallel) with ProcessPoolExecutor(max_workers=n_parallel) as executor: # Create partial function with common arguments - process_file_partial = partial( - _process_single_file, - matcher=matcher, - limit=limit - ) - + process_file_partial = partial(_process_single_file, matcher=matcher, limit=limit) + # Submit all jobs future_to_paths = { executor.submit(process_file_partial, input_path, output_path): (input_path, output_path) for input_path, output_path in zip(input_paths, output_paths) } - + # Collect results for future in as_completed(future_to_paths): input_path, output_path = future_to_paths[future] try: lines_n, included_n = future.result() logger.info( - f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" + f'File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n / lines_n:.4f}' ) total_lines_n += lines_n total_included_n += included_n except Exception as exc: - logger.error(f"File {input_path} generated an exception: {exc}") + logger.error(f'File {input_path} generated an exception: {exc}') total_errors_n += 1 else: # Sequential processing - logger.info("Sequential processing") + logger.info('Sequential processing') for input_path, output_path in zip(input_paths, output_paths): try: - lines_n, included_n = _process_single_file( - input_path, output_path, matcher, limit - ) + lines_n, included_n = _process_single_file(input_path, output_path, matcher, limit) logger.info( - f"File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n/lines_n:.4f}" + f'File statistics for {input_path}: included_n={included_n}; lines_n={lines_n}; ratio={included_n / lines_n:.4f}' ) total_lines_n += lines_n total_included_n += included_n except Exception as exc: - logger.error(f"File {input_path} generated an exception: {exc}") + logger.error(f'File {input_path} generated an exception: {exc}') total_errors_n += 1 logger.info( - f"Total statistics: included_n={total_included_n}; lines_n={total_lines_n}; ratio={total_included_n/total_lines_n:.4f}" + f'Total statistics: included_n={total_included_n}; lines_n={total_lines_n}; ratio={total_included_n / total_lines_n:.4f}' ) if total_errors_n > 0: - logger.error("Processing errors: %i", total_errors_n) + logger.error('Processing errors: %i', total_errors_n) # End timing and log execution time end_time = time.time() execution_time = end_time - start_time - logger.info(f"Script execution time: {execution_time:.3f} seconds") + logger.info(f'Script execution time: {execution_time:.3f} seconds') def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str): @@ -148,7 +138,7 @@ def resolve_paths(input_base_path: str, input_glob: str, output_base_path: str): # Get input files from glob pattern input_fs_file_paths = sorted(input_fs.glob(input_full_glob)) if not input_fs_file_paths: - logger.error(f"No files found matching glob pattern: {input_full_glob}") + logger.error(f'No files found matching glob pattern: {input_full_glob}') sys.exit(1) # Generate corresponding output paths @@ -169,45 +159,45 @@ def _process_single_file(input_path, output_path, matcher, limit: int = 0, log_e """Process a single input/output file pair. Returns (lines_n, included_n).""" lines_n = 0 included_n = 0 - - logger.info("Reading index from %s", input_path) - logger.info("Writing filter output to %s", output_path) - + + logger.info('Reading index from %s', input_path) + logger.info('Writing filter output to %s', output_path) + # Input/output from local or remote file system input_fs, input_fs_path = fsspec.url_to_fs(input_path) output_fs, output_fs_path = fsspec.url_to_fs(output_path) - + # Make sure output directory exists output_fs.makedirs(output_fs._parent(output_fs_path), exist_ok=True) - + # Read and write compressed file if needed - compression = "gzip" if input_fs_path.endswith(".gz") else None - - with output_fs.open(output_fs_path, "w", compression=compression) as output_f: - with input_fs.open(input_fs_path, "rt", compression=compression) as input_f: + compression = 'gzip' if input_fs_path.endswith('.gz') else None + + with output_fs.open(output_fs_path, 'w', compression=compression) as output_f: + with input_fs.open(input_fs_path, 'rt', compression=compression) as input_f: for i, line in enumerate(input_f, 1): # Read CDX line - surt_length = line.find(" ") # we do not need to parse the full line + surt_length = line.find(' ') # we do not need to parse the full line record_surt = line[:surt_length] lines_n += 1 - + # Use SURT matcher include_record = matcher.matches(record_surt) - + if include_record: output_f.write(line) included_n += 1 - + if limit > 0 and included_n >= limit: - logger.info("Limit reached at %i from %s", limit, input_path) + logger.info('Limit reached at %i from %s', limit, input_path) break - + if (i % log_every_n) == 0: - logger.info(f"Lines completed: {i:,} (matched: {included_n:,}) from {input_path}") - + logger.info(f'Lines completed: {i:,} (matched: {included_n:,}) from {input_path}') + # Delete file if empty if included_n == 0: - logger.warning("Output file is empty, removing it: %s", output_fs_path) + logger.warning('Output file is empty, removing it: %s', output_fs_path) output_fs.rm(output_fs_path) return lines_n, included_n @@ -220,10 +210,7 @@ def validate_resolved_paths(output_paths, overwrite): output_fs, _ = fsspec.url_to_fs(output_paths[0]) for output_path in output_paths: if output_fs.exists(output_path): - logger.error( - f"Output file already exists: {output_path}. " - "Use --overwrite to overwrite existing files." - ) + logger.error(f'Output file already exists: {output_path}. Use --overwrite to overwrite existing files.') sys.exit(1) # Make sure directory exists diff --git a/cdx_toolkit/filter_cdx/args.py b/cdx_toolkit/filter_cdx/args.py index 818412b..5e72553 100644 --- a/cdx_toolkit/filter_cdx/args.py +++ b/cdx_toolkit/filter_cdx/args.py @@ -4,43 +4,43 @@ def add_filter_cdx_args(parser: argparse.ArgumentParser): """Add command line arguments.""" parser.add_argument( - "input_base_path", - help="Base directory path on the local file system or remote URL for one or multiple CDX files (e.g., URL to S3 bucket)", + 'input_base_path', + help='Base directory path on the local file system or remote URL for one or multiple CDX files (e.g., URL to S3 bucket)', ) parser.add_argument( - "filter_file", - help="Path to file containing URL or SURT prefixes to filter for (one per line)", + 'filter_file', + help='Path to file containing URL or SURT prefixes to filter for (one per line)', ) parser.add_argument( - "output_base_path", - help="Base directory path for output files (directory structure will be replicated from input_base_path)", + 'output_base_path', + help='Base directory path for output files (directory structure will be replicated from input_base_path)', ) parser.add_argument( - "--filter-type", + '--filter-type', type=str, - default="url", - help="Type of filter entries (options: `url` or `surt`, defaults to `url`)", + default='url', + help='Type of filter entries (options: `url` or `surt`, defaults to `url`)', ) parser.add_argument( - "--input-glob", + '--input-glob', help="Glob pattern relative to input_base_path (e.g., '**/*.cdx.gz' or 'collections/*/indexes/*.gz')", ) parser.add_argument( - "--matching-approach", - choices=["trie", "tuple"], - default="trie", - help="Matching approach to use (default: trie)", + '--matching-approach', + choices=['trie', 'tuple'], + default='trie', + help='Matching approach to use (default: trie)', ) parser.add_argument( - "--overwrite", - action="store_true", - help="Allow overwriting existing output files", + '--overwrite', + action='store_true', + help='Allow overwriting existing output files', ) parser.add_argument( - "--parallel", + '--parallel', type=int, default=1, - help="Number of parallel workers for processing multiple input files (default: 1, sequential processing)", + help='Number of parallel workers for processing multiple input files (default: 1, sequential processing)', ) return parser diff --git a/cdx_toolkit/filter_cdx/matcher.py b/cdx_toolkit/filter_cdx/matcher.py index 64899d1..c10400a 100644 --- a/cdx_toolkit/filter_cdx/matcher.py +++ b/cdx_toolkit/filter_cdx/matcher.py @@ -1,3 +1,4 @@ +from typing import List, Tuple import logging from abc import ABC, abstractmethod @@ -8,7 +9,7 @@ class Matcher(ABC): """Base class for all matching approaches.""" @abstractmethod - def __init__(self, prefixes: tuple[str] | list[str]): + def __init__(self, prefixes: Tuple[str] | List[str]): """Initialize the matcher with a list of prefixes.""" pass @@ -18,23 +19,24 @@ def matches(self, text: str) -> bool: pass @staticmethod - def validate_prefixes(prefixes: tuple[str] | list[str]) -> tuple[str]: + def validate_prefixes(prefixes: Tuple[str] | List[str]) -> Tuple[str]: valid_prefixes = [] for prefix in prefixes: if prefix is None or not isinstance(prefix, str): - raise ValueError("Prefix must be a string and not none.") + raise ValueError('Prefix must be a string and not none.') # remove white spaces prefix = prefix.strip() if len(prefix) == 0: - raise ValueError("Empty prefixes are not allowed") + raise ValueError('Empty prefixes are not allowed') valid_prefixes.append(prefix) return tuple(valid_prefixes) + class TrieNode: def __init__(self): self.children = {} @@ -44,11 +46,11 @@ def __init__(self): class TrieMatcher(Matcher): """Trie-based matching approach.""" - def __init__(self, prefixes: tuple[str] | list[str]): - logger.info(f"Building trie matcher based on {len(prefixes):,} inputs") + def __init__(self, prefixes: Tuple[str] | List[str]): + logger.info(f'Building trie matcher based on {len(prefixes):,} inputs') self.root = self._build_trie(self.validate_prefixes(prefixes)) - def _build_trie(self, prefixes: tuple[str]): + def _build_trie(self, prefixes: Tuple[str]): """Build a trie from a collection of prefixes.""" root = TrieNode() for prefix in prefixes: @@ -75,10 +77,10 @@ def matches(self, text: str) -> bool: class TupleMatcher(Matcher): """Tuple-based matching approach using the built-in method `str.startswith`.""" - def __init__(self, prefixes: tuple[str] | list[str]): - logger.info(f"Building tuple matcher based on {len(prefixes):,} inputs") - self.prefixes_tuple = self.validate_prefixes(prefixes) + def __init__(self, prefixes: Tuple[str] | List[str]): + logger.info(f'Building Tuple matcher based on {len(prefixes):,} inputs') + self.prefixes_Tuple = self.validate_prefixes(prefixes) def matches(self, text: str) -> bool: - """Check if text starts with any prefix in the tuple.""" - return text.startswith(self.prefixes_tuple) + """Check if text starts with any prefix in the Tuple.""" + return text.startswith(self.prefixes_Tuple) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index e98a07c..ee5e932 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -1,7 +1,7 @@ import logging import sys import time -from typing import Literal +from typing import List, Literal import fsspec @@ -13,6 +13,8 @@ logger = logging.getLogger(__name__) +ImplementationType = Literal['fsspec', 'aioboto3'] + def run_warcer_by_cdx(args, cmdline): """Like warcer but fetches WARC records based on one or more CDX index files. @@ -25,42 +27,42 @@ def run_warcer_by_cdx(args, cmdline): - Write to new WARC file with metadata including resource record with index. - The CDX resource record is written to the WARC directly before for response records that matches to the CDX. """ - logger.info("Filtering WARC files based on CDX") + logger.info('Filtering WARC files based on CDX') cdx, kwargs = setup(args) # Start timing start_time = time.time() - implementation = args.implementation + implementation: ImplementationType = args.implementation write_index_as_record = args.write_index_as_record ispartof = args.prefix if args.subprefix: - ispartof += "-" + args.subprefix + ispartof += '-' + args.subprefix info = { - "software": "pypi_cdx_toolkit/" + get_version(), - "isPartOf": ispartof, - "description": "warc extraction based on CDX generated with: " + cmdline, - "format": "WARC file version 1.0", + 'software': 'pypi_cdx_toolkit/' + get_version(), + 'isPartOf': ispartof, + 'description': 'warc extraction based on CDX generated with: ' + cmdline, + 'format': 'WARC file version 1.0', } if args.creator: - info["creator"] = args.creator + info['creator'] = args.creator if args.operator: - info["operator"] = args.operator + info['operator'] = args.operator writer_kwargs = {} - if "size" in kwargs: - writer_kwargs["size"] = kwargs["size"] - del kwargs["size"] + if 'size' in kwargs: + writer_kwargs['size'] = kwargs['size'] + del kwargs['size'] n_parallel = args.parallel log_every_n = 5 limit = 0 if args.limit is None else args.limit prefix_path = str(args.prefix) - prefix_fs, prefix_fs_path = fsspec.url_to_fs(prefix_path) - + prefix_fs, prefix_fs_path = fsspec.url_to_fs(prefix_path) + # make sure the base dir exists prefix_fs.makedirs(prefix_fs._parent(prefix_fs_path), exist_ok=True) @@ -69,44 +71,45 @@ def run_warcer_by_cdx(args, cmdline): args.index_glob, ) - if implementation == "fsspec": + if implementation == 'fsspec': records_n = filter_warc_by_cdx_via_fsspec( index_paths=index_paths, prefix_path=prefix_path, writer_info=info, writer_subprefix=args.subprefix, write_index_as_record=write_index_as_record, - limit = limit, - log_every_n = log_every_n, - warc_download_prefix = cdx.warc_download_prefix, + limit=limit, + log_every_n=log_every_n, + warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel, writer_kwargs=writer_kwargs, ) - elif implementation == "aioboto3": + elif implementation == 'aioboto3': records_n = filter_warc_by_cdx_via_aioboto3( index_paths=index_paths, prefix_path=prefix_path, writer_info=info, writer_subprefix=args.subprefix, write_index_as_record=write_index_as_record, - limit = limit, - log_every_n = log_every_n, - warc_download_prefix = cdx.warc_download_prefix, + limit=limit, + log_every_n=log_every_n, + warc_download_prefix=cdx.warc_download_prefix, n_parallel=n_parallel, writer_kwargs=writer_kwargs, ) else: - raise ValueError("Invalid implementation") + raise ValueError(f'Invalid implementation: {implementation}') - logger.info("WARC records extracted: %i", records_n) + logger.info('WARC records extracted: %i', records_n) # End timing and log execution time end_time = time.time() execution_time = end_time - start_time - logger.info(f"Script execution time: {execution_time:.3f} seconds") + logger.info(f'Script execution time: {execution_time:.3f} seconds') -def get_index_paths(index_path: str, index_glob: str | None = None) -> list[str]: + +def get_index_paths(index_path: str, index_glob: str | None = None) -> List[str]: if index_glob is None: # Read from a single index index_paths = [index_path] @@ -117,16 +120,14 @@ def get_index_paths(index_path: str, index_glob: str | None = None) -> list[str] # Fetch multiple indicies via glob full_glob = index_fs_path + index_glob - logger.info("glob pattern from %s (%s)", full_glob, index_fs.protocol) + logger.info('glob pattern from %s (%s)', full_glob, index_fs.protocol) index_paths = sorted(index_fs.glob(full_glob)) - logger.info( - "glob pattern found %i index files in %s", len(index_paths), index_fs_path - ) + logger.info('glob pattern found %i index files in %s', len(index_paths), index_fs_path) if not index_paths: - logger.error("no index files found via glob") + logger.error('no index files found via glob') sys.exit(1) return index_paths diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py index ebc6762..3c5350d 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py @@ -31,19 +31,19 @@ def get_stats(self) -> dict: elapsed = time.time() - self.start_time if elapsed <= 0: return { - "elapsed": 0, - "bytes_per_sec": 0, - "mb_per_sec": 0, - "requests_per_sec": 0, + 'elapsed': 0, + 'bytes_per_sec': 0, + 'mb_per_sec': 0, + 'requests_per_sec': 0, } return { - "elapsed": elapsed, - "total_bytes": self.total_bytes, - "total_requests": self.total_requests, - "bytes_per_sec": self.total_bytes / elapsed, - "mb_per_sec": (self.total_bytes / elapsed) / (1024 * 1024), - "requests_per_sec": self.total_requests / elapsed, + 'elapsed': elapsed, + 'total_bytes': self.total_bytes, + 'total_requests': self.total_requests, + 'bytes_per_sec': self.total_bytes / elapsed, + 'mb_per_sec': (self.total_bytes / elapsed) / (1024 * 1024), + 'requests_per_sec': self.total_requests / elapsed, } @@ -70,18 +70,16 @@ def _backoff(attempt: int, base_backoff_seconds: float) -> float: def parse_s3_uri(uri: str) -> tuple[str, str]: - if not uri.startswith("s3://"): - raise ValueError(f"Not an S3 URI: {uri}") + if not uri.startswith('s3://'): + raise ValueError(f'Not an S3 URI: {uri}') rest = uri[5:] - i = rest.find("/") + i = rest.find('/') if i <= 0 or i == len(rest) - 1: - raise ValueError(f"Malformed S3 URI: {uri}") + raise ValueError(f'Malformed S3 URI: {uri}') return rest[:i], rest[i + 1 :] -async def with_retries( - coro_factory, *, op_name: str, max_attempts: int, base_backoff_seconds: float -): +async def with_retries(coro_factory, *, op_name: str, max_attempts: int, base_backoff_seconds: float): last_exc = None for attempt in range(1, max_attempts + 1): try: @@ -89,11 +87,11 @@ async def with_retries( except (TimeoutError, ClientError, EndpointConnectionError) as exc: last_exc = exc if attempt >= max_attempts: - logger.error("%s failed after %d attempts: %r", op_name, attempt, exc) + logger.error('%s failed after %d attempts: %r', op_name, attempt, exc) break sleep_s = _backoff(attempt, base_backoff_seconds) logger.warning( - "%s failed (attempt %d/%d) – retrying in %.2fs", + '%s failed (attempt %d/%d) – retrying in %.2fs', op_name, attempt, max_attempts, @@ -103,16 +101,14 @@ async def with_retries( raise last_exc -async def get_object_stream( - s3, bucket: str, key: str, max_attempts: int, base_backoff_seconds: float -): +async def get_object_stream(s3, bucket: str, key: str, max_attempts: int, base_backoff_seconds: float): resp = await with_retries( lambda: s3.get_object(Bucket=bucket, Key=key), - op_name=f"get_object {bucket}/{key}", + op_name=f'get_object {bucket}/{key}', max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, ) - return resp["Body"] + return resp['Body'] async def ranged_get_bytes( @@ -126,12 +122,12 @@ async def ranged_get_bytes( ) -> bytes: end = offset + length - 1 # inclusive resp = await with_retries( - lambda: s3.get_object(Bucket=bucket, Key=key, Range=f"bytes={offset}-{end}"), - op_name=f"ranged_get {bucket}/{key}[{offset}:{end}]", + lambda: s3.get_object(Bucket=bucket, Key=key, Range=f'bytes={offset}-{end}'), + op_name=f'ranged_get {bucket}/{key}[{offset}:{end}]', max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, ) - return await resp["Body"].read() + return await resp['Body'].read() async def mpu_create( @@ -143,16 +139,16 @@ async def mpu_create( max_attempts: int, base_backoff_seconds: float, ): - kwargs = {"Bucket": bucket, "Key": key} + kwargs = {'Bucket': bucket, 'Key': key} if content_type: - kwargs["ContentType"] = content_type + kwargs['ContentType'] = content_type resp = await with_retries( lambda: s3.create_multipart_upload(**kwargs), - op_name=f"create_multipart_upload {bucket}/{key}", + op_name=f'create_multipart_upload {bucket}/{key}', max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, ) - return resp["UploadId"] + return resp['UploadId'] async def mpu_upload_part( @@ -173,11 +169,11 @@ async def mpu_upload_part( PartNumber=part_number, Body=body, ), - op_name=f"upload_part {bucket}/{key}#{part_number}", + op_name=f'upload_part {bucket}/{key}#{part_number}', max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, ) - return resp["ETag"] + return resp['ETag'] async def mpu_complete( @@ -191,9 +187,9 @@ async def mpu_complete( ): await with_retries( lambda: s3.complete_multipart_upload( - Bucket=bucket, Key=key, UploadId=upload_id, MultipartUpload={"Parts": parts} + Bucket=bucket, Key=key, UploadId=upload_id, MultipartUpload={'Parts': parts} ), - op_name=f"complete_multipart_upload {bucket}/{key}", + op_name=f'complete_multipart_upload {bucket}/{key}', max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, ) @@ -203,4 +199,4 @@ async def mpu_abort(s3, bucket: str, key: str, upload_id: str): try: await s3.abort_multipart_upload(Bucket=bucket, Key=key, UploadId=upload_id) except Exception: - logger.exception("Failed to abort MPU %s on %s/%s", upload_id, bucket, key) + logger.exception('Failed to abort MPU %s on %s/%s', upload_id, bucket, key) diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py index aa958d1..9e25bd0 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py @@ -1,9 +1,7 @@ import asyncio from io import BytesIO import logging - -import asyncio -import logging +from typing import List import aioboto3 from botocore.config import Config @@ -27,7 +25,7 @@ def filter_warc_by_cdx_via_aioboto3( - index_paths: list[str], + index_paths: List[str], prefix_path: str, writer_info: dict, writer_subprefix: str | None = None, @@ -38,7 +36,6 @@ def filter_warc_by_cdx_via_aioboto3( n_parallel: int = 1, writer_kwargs: dict | None = None, ) -> int: - try: return asyncio.run( filter_warc_by_cdx_via_aioboto3_async( @@ -55,13 +52,13 @@ def filter_warc_by_cdx_via_aioboto3( ) ) except KeyboardInterrupt: - logger.warning("Interrupted by user.") + logger.warning('Interrupted by user.') return -1 async def filter_warc_by_cdx_via_aioboto3_async( - index_paths: list[str], + index_paths: List[str], prefix_path: str, writer_info: dict, writer_subprefix: str | None = None, @@ -85,8 +82,8 @@ async def filter_warc_by_cdx_via_aioboto3_async( item_queue: asyncio.Queue = asyncio.Queue(maxsize=item_queue_size) boto_cfg = Config( - region_name="us-east-1", - retries={"max_attempts": max(2, max_attempts), "mode": "standard"}, + region_name='us-east-1', + retries={'max_attempts': max(2, max_attempts), 'mode': 'standard'}, connect_timeout=10, read_timeout=120, ) @@ -96,11 +93,9 @@ async def filter_warc_by_cdx_via_aioboto3_async( session = aioboto3.Session() - async with session.client("s3", config=boto_cfg) as s3: + async with session.client('s3', config=boto_cfg) as s3: # Fetch file paths and ranges (offset, length) from index files - logger.info( - "Starting lister, %d fetchers, %d consumers", num_fetchers, num_consumers - ) + logger.info('Starting lister, %d fetchers, %d consumers', num_fetchers, num_consumers) lister_task = asyncio.create_task( lister_from_index( key_queue=key_queue, @@ -142,47 +137,46 @@ async def filter_warc_by_cdx_via_aioboto3_async( writer_subprefix=writer_subprefix, writer_kwargs=writer_kwargs, log_every_n=log_every_n, - gzip=index_paths[0].endswith(".gz") if index_paths else False, + gzip=index_paths[0].endswith('.gz') if index_paths else False, ) ) for i in range(num_consumers) ] await lister_task - logger.info("Lister completed, waiting for fetchers to finish") + logger.info('Lister completed, waiting for fetchers to finish') await asyncio.gather(*fetchers) - logger.info("All fetchers completed") + logger.info('All fetchers completed') # Send stop signals to consumers for _ in range(num_consumers): await item_queue.put(_STOP) consumer_results = await asyncio.gather(*consumers) - n_records = sum([result["stats"]["total_requests"] for result in consumer_results]) + n_records = sum([result['stats']['total_requests'] for result in consumer_results]) - logger.info("All consumers completed") + logger.info('All consumers completed') return n_records async def lister_from_index( key_queue: asyncio.Queue, - index_paths: list[str], + index_paths: List[str], warc_download_prefix: str, num_fetchers: int, limit: int = 0, ): """Stage 1: stream the index, parse lines -> RangeJob -> key_queue.""" - logger.info("Range index limit: %i", limit) + logger.info('Range index limit: %i', limit) count = 0 if not index_paths: - logger.error("No index paths provided!") + logger.error('No index paths provided!') else: - # Iterate over index files for index_path in index_paths: # Fetch range queries from index @@ -197,21 +191,21 @@ async def lister_from_index( count += 1 if limit > 0 and count >= limit: - logger.warning("Index limit reached at %i", count) + logger.warning('Index limit reached at %i', count) break except Exception as e: - logger.error("Failed to read CDX index from %s: %s", index_path, e) + logger.error('Failed to read CDX index from %s: %s', index_path, e) if limit > 0 and count >= limit: - logger.warning("Limit reached at %i", count) + logger.warning('Limit reached at %i', count) break # signal fetchers to stop for _ in range(num_fetchers): await key_queue.put(_STOP) - logger.info("Lister enqueued %d jobs from %s", count, index_path) + logger.info('Lister enqueued %d jobs from %s', count, index_path) async def fetcher( @@ -234,14 +228,13 @@ async def fetcher( if job is _STOP: stats = tracker.get_stats() logger.info( - "Fetcher %d stopping. Stats: %.1fs, %d requests, %.1f MB, " - "%.2f MB/s, %.2f req/s", + 'Fetcher %d stopping. Stats: %.1fs, %d requests, %.1f MB, %.2f MB/s, %.2f req/s', fetcher_id, - stats["elapsed"], - stats["total_requests"], - stats["total_bytes"] / (1024 * 1024), - stats["mb_per_sec"], - stats["requests_per_sec"], + stats['elapsed'], + stats['total_requests'], + stats['total_bytes'] / (1024 * 1024), + stats['mb_per_sec'], + stats['requests_per_sec'], ) break # Exit loop, but still execute finally block assert isinstance(job, RangeJob) @@ -261,23 +254,23 @@ async def fetcher( if counter % log_every_n == 0: stats = tracker.get_stats() logger.info( - "Fetcher %d: %d items, %.1f MB, %.2f MB/s, %.2f req/s", + 'Fetcher %d: %d items, %.1f MB, %.2f MB/s, %.2f req/s', fetcher_id, counter, - stats["total_bytes"] / (1024 * 1024), - stats["mb_per_sec"], - stats["requests_per_sec"], + stats['total_bytes'] / (1024 * 1024), + stats['mb_per_sec'], + stats['requests_per_sec'], ) await item_queue.put(RangePayload(job=job, data=data)) except Exception: logger.exception( - "Fetcher %d failed on %s/%s [%d,%d]", + 'Fetcher %d failed on %s/%s [%d,%d]', fetcher_id, - getattr(job, "bucket", "?"), - getattr(job, "key", "?"), - getattr(job, "offset", -1), - getattr(job, "length", -1), + getattr(job, 'bucket', '?'), + getattr(job, 'key', '?'), + getattr(job, 'offset', -1), + getattr(job, 'length', -1), ) finally: key_queue.task_done() @@ -300,7 +293,7 @@ async def consumer( writer_subprefix: str | None = None, write_index_as_record: bool = False, writer_kwargs: dict | None = None, - warc_version: str = "1.0", + warc_version: str = '1.0', log_every_n: int = 1000, gzip: bool = False, ): @@ -315,10 +308,10 @@ async def consumer( if writer_subprefix is not None: file_name += writer_subprefix + '-' file_name += '{:06d}'.format(consumer_id) + '.extracted.warc' - + if gzip: file_name += '.gz' - + writer = ShardWriter( file_name, dest_bucket, @@ -350,13 +343,12 @@ async def consumer( if item is _STOP: stats = tracker.get_stats() logger.info( - "Consumer %d stopping. Stats: %.1fs, %d items, %.1f MB written, " - "%.2f MB/s write speed", + 'Consumer %d stopping. Stats: %.1fs, %d items, %.1f MB written, %.2f MB/s write speed', consumer_id, - stats["elapsed"], - stats["total_requests"], - stats["total_bytes"] / (1024 * 1024), - stats["mb_per_sec"], + stats['elapsed'], + stats['total_requests'], + stats['total_bytes'] / (1024 * 1024), + stats['mb_per_sec'], ) should_stop = True else: @@ -369,16 +361,14 @@ async def consumer( if counter % log_every_n == 0: stats = tracker.get_stats() logger.info( - "Consumer %d: %d items, %.1f MB written, %.2f MB/s", + 'Consumer %d: %d items, %.1f MB written, %.2f MB/s', consumer_id, counter, - stats["total_bytes"] / (1024 * 1024), - stats["mb_per_sec"], + stats['total_bytes'] / (1024 * 1024), + stats['mb_per_sec'], ) except Exception: - logger.exception( - "Consumer %d failed on %s", consumer_id, getattr(item, "job", None) - ) + logger.exception('Consumer %d failed on %s', consumer_id, getattr(item, 'job', None)) should_stop = False finally: item_queue.task_done() @@ -388,7 +378,4 @@ async def consumer( finally: await writer.close(s3) - return { - 'consumer_id': consumer_id, - 'stats': tracker.get_stats() - } + return {'consumer_id': consumer_id, 'stats': tracker.get_stats()} diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py index 1599174..b38135d 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py @@ -1,4 +1,5 @@ import logging +from typing import List, Dict from cdx_toolkit.warcer_by_cdx.aioboto3_utils import ( mpu_abort, @@ -30,7 +31,7 @@ def __init__( self.base_backoff_seconds = base_backoff_seconds self.upload_id: str | None = None self.part_number = 1 - self.parts: list[dict] = [] + self.parts: List[Dict] = [] self.buffer = bytearray() async def start(self, s3): @@ -42,7 +43,7 @@ async def start(self, s3): max_attempts=self.max_attempts, base_backoff_seconds=self.base_backoff_seconds, ) - logger.info("Started MPU for %s (UploadId=%s)", self.shard_key, self.upload_id) + logger.info('Started MPU for %s (UploadId=%s)', self.shard_key, self.upload_id) async def _flush_full_parts(self, s3): while len(self.buffer) >= self.min_part_size: @@ -58,7 +59,7 @@ async def _flush_full_parts(self, s3): self.max_attempts, self.base_backoff_seconds, ) - self.parts.append({"PartNumber": self.part_number, "ETag": etag}) + self.parts.append({'PartNumber': self.part_number, 'ETag': etag}) self.part_number += 1 async def write(self, s3, data: bytes): @@ -80,7 +81,7 @@ async def close(self, s3): self.max_attempts, self.base_backoff_seconds, ) - self.parts.append({"PartNumber": self.part_number, "ETag": etag}) + self.parts.append({'PartNumber': self.part_number, 'ETag': etag}) self.part_number += 1 self.buffer.clear() @@ -94,13 +95,9 @@ async def close(self, s3): self.max_attempts, self.base_backoff_seconds, ) - logger.info( - "Completed MPU for %s with %d parts.", self.shard_key, len(self.parts) - ) + logger.info('Completed MPU for %s with %d parts.', self.shard_key, len(self.parts)) except Exception: - logger.exception( - "Completing MPU failed for %s; attempting abort.", self.shard_key - ) + logger.exception('Completing MPU failed for %s; attempting abort.', self.shard_key) if self.upload_id: await mpu_abort(s3, self.dest_bucket, self.shard_key, self.upload_id) raise diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index d81b3c1..3555ad7 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -6,53 +6,47 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): + parser.add_argument('index_path', help='Path to CDX index file (local or remote, e.g. S3)') parser.add_argument( - "index_path", help="Path to CDX index file (local or remote, e.g. S3)" - ) - parser.add_argument( - "--index-glob", + '--index-glob', type=str, default=None, - help="a glob pattern for read from multiple indices", + help='a glob pattern for read from multiple indices', ) - parser.add_argument("--prefix", default="TEST", help="prefix for the warc filename") + parser.add_argument('--prefix', default='TEST', help='prefix for the warc filename') parser.add_argument( - "--subprefix", + '--subprefix', type=str, default=None, - help="subprefix for the warc filename, default None", + help='subprefix for the warc filename, default None', ) parser.add_argument( - "--size", + '--size', type=int, default=1000000000, - help="target for the warc filesize in bytes", - ) - parser.add_argument( - "--creator", - action="store", - help="creator of the warc: person, organization, service", + help='target for the warc filesize in bytes', ) parser.add_argument( - "--operator", action="store", help="a person, if the creator is an organization" + '--creator', + action='store', + help='creator of the warc: person, organization, service', ) + parser.add_argument('--operator', action='store', help='a person, if the creator is an organization') parser.add_argument( - "--warc-download-prefix", - action="store", - help="prefix for downloading content, automatically set for CC", + '--warc-download-prefix', + action='store', + help='prefix for downloading content, automatically set for CC', ) parser.add_argument( - "--write-index-as-record", - action="store_true", - help="If enable, the CDX index is written as resource record to the WARC file", + '--write-index-as-record', + action='store_true', + help='If enable, the CDX index is written as resource record to the WARC file', ) parser.add_argument( - "--parallel", + '--parallel', type=int, default=1, - help="Number of parallel workers for fetchin WARC records (default: 1, sequential processing)", - ) - parser.add_argument( - "--implementation", type=str, default="fsspec", help="implementation (fsspec, aioboto3)" + help='Number of parallel workers for fetchin WARC records (default: 1, sequential processing)', ) + parser.add_argument('--implementation', type=str, default='fsspec', help='implementation (fsspec, aioboto3)') return parser diff --git a/cdx_toolkit/warcer_by_cdx/cdx_utils.py b/cdx_toolkit/warcer_by_cdx/cdx_utils.py index 869fbe3..822f6fd 100644 --- a/cdx_toolkit/warcer_by_cdx/cdx_utils.py +++ b/cdx_toolkit/warcer_by_cdx/cdx_utils.py @@ -16,36 +16,32 @@ def get_index_as_string_from_path(index_path: str | Path, index_fs: None | fsspec.AbstractFileSystem = None) -> str: """Fetch (and decompress) index content as string from local or remote path.""" - logger.info("Fetching index from %s ...", index_path) + logger.info('Fetching index from %s ...', index_path) if index_fs is None: index_fs, index_fs_path = fsspec.url_to_fs(index_path) else: index_fs_path = index_path - compression = "gzip" if index_fs_path.endswith(".gz") else None + compression = 'gzip' if index_fs_path.endswith('.gz') else None - with index_fs.open(index_fs_path, "rt", compression=compression) as f: + with index_fs.open(index_fs_path, 'rt', compression=compression) as f: return f.read() -def get_index_record( - index: str, index_path: str, encoding: str = "utf-8" -) -> ArcWarcRecord: +def get_index_record(index: str, index_path: str, encoding: str = 'utf-8') -> ArcWarcRecord: """Build WARC resource record for index.""" return WARCWriter(None).create_warc_record( uri=index_path, # TODO this could be a local / internal path - record_type="resource", + record_type='resource', payload=BytesIO(index.encode(encoding)), http_headers=None, - warc_content_type="application/cdx", + warc_content_type='application/cdx', warc_headers_dict=None, # TODO should we add some other metadata headers? ) - - def read_cdx_line(line: str, warc_download_prefix: str) -> tuple[str, int, int]: - cols = line.split(" ", maxsplit=2) + cols = line.split(' ', maxsplit=2) if len(cols) == 3: # TODO can there be a different format? @@ -55,37 +51,35 @@ def read_cdx_line(line: str, warc_download_prefix: str) -> tuple[str, int, int]: # > The default first line of a CDX file is: # > CDX A b e a m s c k r V v D d g M n data = json.loads(cols[2]) - data["timestamp"] = cols[1] + data['timestamp'] = cols[1] else: - raise ValueError(f"Cannot parse line: {line}") + raise ValueError(f'Cannot parse line: {line}') - filename = data["filename"] - offset = int(data["offset"]) - length = int(data["length"]) + filename = data['filename'] + offset = int(data['offset']) + length = int(data['length']) - warc_url = warc_download_prefix + "/" + filename + warc_url = warc_download_prefix + '/' + filename return (warc_url, offset, length) - def read_cdx_index_from_s3(s3_path: str, warc_download_prefix: str) -> Iterable[tuple[str, int, int]]: """ Read CDX records from a gzipped S3 file. """ # if not s3_path.startswith("s3://"): # raise ValueError(f"Invalid S3 path: {s3_path}") - - logger.info("Reading CDX from %s", s3_path) - with fsspec.open(s3_path, "rt", compression="gzip" if s3_path.endswith(".gz") else None) as f: + logger.info('Reading CDX from %s', s3_path) + + with fsspec.open(s3_path, 'rt', compression='gzip' if s3_path.endswith('.gz') else None) as f: for line in f: try: yield read_cdx_line(line, warc_download_prefix) except Exception: # Skip malformed lines - logger.error("Invalid CDX line: %s", line) + logger.error('Invalid CDX line: %s', line) continue - logger.info(f"CDX completed from %s", s3_path) - \ No newline at end of file + logger.info(f'CDX completed from {s3_path}') diff --git a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py index dc3eec1..1cc5442 100644 --- a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py @@ -1,7 +1,6 @@ - import json import logging -from typing import Iterable +from typing import Dict, Iterable, List import cdx_toolkit from concurrent.futures import ThreadPoolExecutor, as_completed @@ -9,31 +8,34 @@ from warcio.recordloader import ArcWarcRecord from cdx_toolkit.warcer_by_cdx.cdx_utils import get_index_as_string_from_path, get_index_record - + logger = logging.getLogger(__name__) + def filter_warc_by_cdx_via_fsspec( - index_paths: list[str], - prefix_path: str, - writer_info: dict, - writer_subprefix: str | None = None, - write_index_as_record: bool = False, - limit: int = 0, - log_every_n: int = 1000, - warc_download_prefix: str | None = None, - n_parallel: int = 1, - writer_kwargs: dict | None = None, - ) -> int: - + index_paths: List[str], + prefix_path: str, + writer_info: Dict, + writer_subprefix: str | None = None, + write_index_as_record: bool = False, + limit: int = 0, + log_every_n: int = 1000, + warc_download_prefix: str | None = None, + n_parallel: int = 1, + writer_kwargs: Dict | None = None, +) -> int: writer = cdx_toolkit.warc.get_writer( - prefix_path, writer_subprefix, writer_info, **(writer_kwargs if writer_kwargs else {}), + prefix_path, + writer_subprefix, + writer_info, + **(writer_kwargs if writer_kwargs else {}), ) # Iterate over index files records_n = 0 for index_path in index_paths: - logger.info("filtering based on CDX from %s", index_path) + logger.info('filtering based on CDX from %s', index_path) # Read index completely (for the WARC resource record) index = get_index_as_string_from_path(index_path) @@ -45,10 +47,10 @@ def filter_warc_by_cdx_via_fsspec( # Write index as record to WARC # TODO at what position should the resource records be written? if write_index_as_record: - logger.info("Writing CDX as resource record to WARC ... ") + logger.info('Writing CDX as resource record to WARC ... ') writer.write_record(get_index_record(index, index_path)) - logger.info("CDX resource recorded added") + logger.info('CDX resource recorded added') # The index file holds all the information to download specific objects (file, offset, length etc.) index_lines = index.splitlines() @@ -69,14 +71,14 @@ def filter_warc_by_cdx_via_fsspec( records_n += 1 if (records_n % log_every_n) == 0: - logger.info(f"Record progress: {records_n:,} from {index_path}") + logger.info(f'Record progress: {records_n:,} from {index_path}') if limit > 0 and records_n >= limit: # stop index loop - logger.info("Limit reached") + logger.info('Limit reached') break - logger.info("Filtering completed (index file: %s)", index_path) + logger.info('Filtering completed (index file: %s)', index_path) writer.close() @@ -85,54 +87,58 @@ def filter_warc_by_cdx_via_fsspec( def fetch_single_record(obj): """Fetch a single WARC record with error handling.""" - url = obj["url"] - timestamp = obj["timestamp"] + url = obj['url'] + timestamp = obj['timestamp'] try: record = obj.fetch_warc_record() if obj.is_revisit(): - logger.warning( - "revisit record being resolved for url %s %s", url, timestamp - ) + logger.warning('revisit record being resolved for url %s %s', url, timestamp) return record except RuntimeError: # pragma: no cover - logger.warning( - "skipping capture for RuntimeError 404: %s %s", url, timestamp - ) + logger.warning('skipping capture for RuntimeError 404: %s %s', url, timestamp) return None - + + def fetch_records_from_index( - index_lines: list[str], warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 + index_lines: List[str], warc_download_prefix=None, limit: int = 0, n_parallel: int = 1 ) -> Iterable[ArcWarcRecord]: """Fetch WARC records based on CDX index.""" - + if n_parallel <= 1: # Sequential processing for obj in generate_caputure_objects_from_index( - index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, + index_lines=index_lines, + warc_download_prefix=warc_download_prefix, + limit=limit, ): record = fetch_single_record(obj) if record is not None: yield record else: # Parallel processing - logger.info(f"Fetch records in parallel with {n_parallel=}") - objects = list(generate_caputure_objects_from_index( - index_lines=index_lines, warc_download_prefix=warc_download_prefix, limit=limit, - )) - + logger.info(f'Fetch records in parallel with {n_parallel=}') + objects = list( + generate_caputure_objects_from_index( + index_lines=index_lines, + warc_download_prefix=warc_download_prefix, + limit=limit, + ) + ) + with ThreadPoolExecutor(max_workers=n_parallel) as executor: # Submit all tasks future_to_obj = {executor.submit(fetch_single_record, obj): obj for obj in objects} - + # Yield results as they complete for future in as_completed(future_to_obj): record = future.result() if record is not None: yield record + def generate_caputure_objects_from_index( - index_lines: list[str], warc_download_prefix=None, limit: int = 0, progress_bar: bool = False + index_lines: List[str], warc_download_prefix=None, limit: int = 0, progress_bar: bool = False ) -> Iterable[cdx_toolkit.CaptureObject]: """Read CDX index and generate CaptureObject objects.""" @@ -143,20 +149,18 @@ def generate_caputure_objects_from_index( # index_lines = tqdm(index_lines, desc="Extracting from WARC", total=len(index_lines)) for i, line in enumerate(index_lines, 1): - cols = line.split(" ", maxsplit=2) + cols = line.split(' ', maxsplit=2) if len(cols) == 3: # TODO can there be a different format? # surt, timestamp, json_data = cols - # + # # CC seems to not follow the specification from https://iipc.github.io/warc-specifications/specifications/cdx-format/cdx-2015/ # > The default first line of a CDX file is: # > CDX A b e a m s c k r V v D d g M n data = json.loads(cols[2]) - data["timestamp"] = cols[1] + data['timestamp'] = cols[1] else: - raise ValueError(f"Cannot parse line: {line}") + raise ValueError(f'Cannot parse line: {line}') - yield cdx_toolkit.CaptureObject( - data=data, wb=None, warc_download_prefix=warc_download_prefix - ) + yield cdx_toolkit.CaptureObject(data=data, wb=None, warc_download_prefix=warc_download_prefix) diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_filter_cdx.py b/tests/test_filter_cdx.py deleted file mode 100644 index 7d864f9..0000000 --- a/tests/test_filter_cdx.py +++ /dev/null @@ -1,154 +0,0 @@ -import pytest -from pathlib import Path - -from cdx_toolkit.cli import main -from cdx_toolkit.filter_cdx import resolve_paths, validate_resolved_paths -from conftest import requires_aws_s3 - -fixture_path = Path(__file__).parent / "data/filter_cdx" - - -@requires_aws_s3 -def test_cli_filter_cdx_with_surts(tmpdir, caplog): - # check if expected number is reached - index_path = "s3://commoncrawl/cc-index/collections" - index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" - whitelist_path = ( - fixture_path / "whitelist_10_surts.txt" - ) # matches on first domain and after 100k and 200k lines - - main( - args=f"-v --limit 1140 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --filter-type surt --input-glob {index_glob}".split() - ) - - assert "Limit reached" in caplog.text - - -@requires_aws_s3 -def test_cli_filter_cdx_with_urls(tmpdir, caplog): - # check if expected number is reached - index_path = "s3://commoncrawl/cc-index/collections" - index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" - whitelist_path = ( - fixture_path / "whitelist_10_urls.txt" - ) # matches on first domain and after 100k and 200k lines - - main( - args=f"-v --limit 1140 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --filter-type url --input-glob {index_glob}".split() - ) - - assert "Limit reached" in caplog.text - - -@requires_aws_s3 -def test_resolve_cdx_paths_from_cc_s3_to_local(tmpdir): - tmpdir = str(tmpdir) - base_path = "s3://commoncrawl/cc-index/collections" - glob_pattern = "/CC-MAIN-2016-30/indexes/*.gz" - - input_files, output_files = resolve_paths( - base_path, glob_pattern, output_base_path=tmpdir - ) - - assert len(input_files) == len( - output_files - ), "Input and output count must be the same" - assert len(input_files) == 300, "Invalid input count" - assert ( - input_files[0] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00000.gz" - ), "Invalid input file" - assert ( - output_files[0] == tmpdir + "/CC-MAIN-2016-30/indexes/cdx-00000.gz" - ), "Invalid output file" - assert input_files[-1] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00299.gz" - - -@requires_aws_s3 -def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): - output_base_path = "s3://some-other-bucket/filter-cdx" - base_path = "s3://commoncrawl/cc-index/collections" - glob_pattern = "/CC-MAIN-2016-30/indexes/cdx-000*.gz" - - input_files, output_files = resolve_paths( - base_path, glob_pattern, output_base_path=output_base_path - ) - - assert len(input_files) == len( - output_files - ), "Input and output count must be the same" - assert len(input_files) == 100, "Invalid input count" - assert ( - input_files[0] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00000.gz" - ), "Invalid input file" - assert ( - output_files[0] == output_base_path + "/CC-MAIN-2016-30/indexes/cdx-00000.gz" - ), "Invalid output file" - assert input_files[-1] == base_path + "/CC-MAIN-2016-30/indexes/cdx-00099.gz" - - -@requires_aws_s3 -def test_filter_cdx_nonexistent_surt_file_exits(tmpdir, caplog): - index_path = "s3://commoncrawl/cc-index/collections" - index_glob = "/CC-MAIN-2024-30/indexes/cdx-00187.gz" - nonexistent_surt_file = str(tmpdir / "nonexistent_surts.txt") - - # Test that the command exits when SURT file doesn't exist - with pytest.raises(SystemExit) as exc_info: - main( - args=f"-v --limit 1140 filter_cdx {index_path} {nonexistent_surt_file} {tmpdir} --input-glob {index_glob}".split() - ) - - assert exc_info.value.code == 1 - assert f"Filter file not found: {nonexistent_surt_file}" in caplog.text - - -def test_resolve_paths_no_files_found_exits(tmpdir, caplog): - # Test that resolve_paths exits when no files match the glob pattern - with pytest.raises(SystemExit) as exc_info: - resolve_paths( - input_base_path=str(tmpdir), - input_glob="/nonexistent-pattern-*.gz", - output_base_path=str(tmpdir) - ) - - assert exc_info.value.code == 1 - assert "No files found matching glob pattern:" in caplog.text - - -def test_validate_resolved_paths_existing_file_exits(tmpdir, caplog): - # Create an existing output file - existing_file = tmpdir / "existing_output.txt" - existing_file.write_text("existing content", encoding="utf-8") - - output_paths = [str(existing_file)] - - # Test that validate_resolved_paths exits when output file exists and overwrite=False - with pytest.raises(SystemExit) as exc_info: - validate_resolved_paths(output_paths, overwrite=False) - - assert exc_info.value.code == 1 - assert f"Output file already exists: {str(existing_file)}" in caplog.text - assert "Use --overwrite to overwrite existing files" in caplog.text - - -@requires_aws_s3 -def test_cli_filter_cdx_with_parallel_processing(tmpdir, caplog): - """Test that parallel processing works correctly and processes multiple files.""" - index_path = "s3://commoncrawl/cc-index/collections" - index_glob = "/CC-MAIN-2024-30/indexes/cdx-0018[78].gz" # Multiple files pattern - whitelist_path = fixture_path / "whitelist_11_surts.txt" # Additonal entry for cdx-00188.gz - - # Run with parallel processing (2 workers) - main( - args=f"-v --limit 10 filter_cdx {index_path} {str(whitelist_path)} {tmpdir} --filter-type surt --input-glob {index_glob} --parallel 2".split() - ) - - # Check that multiple files were processed in parallel - assert "Found" in caplog.text and "files matching pattern" in caplog.text - assert "File statistics for" in caplog.text - assert "Total statistics:" in caplog.text - - # Should have processed multiple files (pattern matches 2 files: cdx-00187.gz and cdx-00188.gz) - file_stats_count = caplog.text.count("File statistics for") - assert file_stats_count == 2, "Should process exactly 2 files with the glob pattern" - diff --git a/tests/test_warc_by_cdx_aioboto3.py b/tests/test_warc_by_cdx_aioboto3.py deleted file mode 100644 index abb678b..0000000 --- a/tests/test_warc_by_cdx_aioboto3.py +++ /dev/null @@ -1,93 +0,0 @@ -from io import BytesIO -import os -from pathlib import Path - -import fsspec -from cdx_toolkit.cli import main -from cdx_toolkit.warcer_by_cdx.cdx_utils import ( - get_index_as_string_from_path, -) -from cdx_toolkit.warcer_by_cdx.fsspec_warcer import ( - generate_caputure_objects_from_index, -) -import pytest -from warcio.archiveiterator import ArchiveIterator - -from conftest import requires_aws_s3 - -from warcio import WARCWriter - -fixture_path = Path(__file__).parent / "data/warc_by_cdx" - - -def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args=""): - # test cli and check output - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" - - # --write-index-as-record - - main( - args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --prefix {str(base_prefix)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix} {extra_args}""".split() - ) - - # Check log - assert "Limit reached" in caplog.text - - # Validate extracted WARC - warc_filename = "TEST_warc_by_index-000000.extracted.warc.gz" - warc_path = str(base_prefix) + "/" + warc_filename - resource_record = None - info_record = None - response_records = [] - response_contents = [] - - with fsspec.open(warc_path, 'rb') as stream: - for record in ArchiveIterator(stream): - if record.rec_type == 'warcinfo': - info_record = record.content_stream().read().decode("utf-8") - - if record.rec_type == 'response': - response_records.append(record) - response_contents.append(record.content_stream().read().decode("utf-8", errors="ignore")) - - # if record.rec_type == 'resource': - # resource_record = record - - assert len(response_records) == 10, "Invalid record count" - # assert resource_record is not None - # assert resource_record.length == 568010 - - assert "Catalogue en ligne Mission de France" in response_contents[0], "Invalid response content" - assert "dojo/dijit/themes/tundra/tundra" in response_contents[9], "Invalid response content" - assert info_record is not None - assert "operator: bob" in info_record, "Invalid WARC info" - - - -@requires_aws_s3 -def test_cli_warc_by_cdx_over_s3_to_s3_in_parallel_aioboto3(tmpdir, caplog): - assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog, extra_args=" --parallel 3 --implementation aioboto3") - - - -def test_warc_info(): - warc_version = "1.0" - gzip = False - file_handler = BytesIO() - filename = "foo.warc" - - info = { - "software": "pypi_cdx_toolkit/123", - "isPartOf": "bar", - "description": "warc extraction based on CDX generated with: xx", - "format": "WARC file version 1.0", - } - - writer = WARCWriter(file_handler, gzip=gzip, warc_version=warc_version) - warcinfo = writer.create_warcinfo_record(filename, info) - - writer.write_record(warcinfo) - - file_value = file_handler.getvalue().decode("utf-8") - - assert "pypi_cdx_toolkit/123" in file_value diff --git a/tests/unit/test_warc.py b/tests/unit/test_warc.py index 0c52614..e2474ff 100644 --- a/tests/unit/test_warc.py +++ b/tests/unit/test_warc.py @@ -1,35 +1,6 @@ -from conftest import requires_aws_s3 -from cdx_toolkit.warc import wb_redir_to_original, fetch_warc_record +import cdx_toolkit.warc def test_wb_redir_to_original(): location = 'https://web.archive.org/web/20110209062054id_/http://commoncrawl.org/' ret = 'http://commoncrawl.org/' - assert wb_redir_to_original(location) == ret - - -def test_fetch_warc_record_from_http(): - encoding = "utf-8" - capture = {'url': 'https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319', 'mime': 'text/html', 'mime-detected': 'application/xhtml+xml', 'status': '200', 'digest': 'D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP', 'length': '9754', 'offset': '111440525', 'filename': 'crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz', 'charset': 'UTF-8', 'languages': 'fra', 'timestamp': '20240716153155'} - warc_download_prefix = 'https://data.commoncrawl.org' - - record = fetch_warc_record(capture, warc_download_prefix) - record_content = record.content_stream().read().decode(encoding, errors="ignore") - - assert record.rec_type == "response" - assert record.length == 75825 - assert "Catalogue en ligne Mission de France" in record_content - - -@requires_aws_s3 -def test_fetch_warc_record_from_s3(): - encoding = "utf-8" - capture = {'url': 'https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319', 'mime': 'text/html', 'mime-detected': 'application/xhtml+xml', 'status': '200', 'digest': 'D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP', 'length': '9754', 'offset': '111440525', 'filename': 'crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz', 'charset': 'UTF-8', 'languages': 'fra', 'timestamp': '20240716153155'} - warc_download_prefix = 's3://commoncrawl' - - record = fetch_warc_record(capture, warc_download_prefix) - record_content = record.content_stream().read().decode(encoding, errors="ignore") - - assert record.rec_type == "response" - assert record.length == 75825 - assert "Catalogue en ligne Mission de France" in record_content - + assert cdx_toolkit.warc.wb_redir_to_original(location) == ret diff --git a/tests/warc_by_cdx/__init__.py b/tests/warc_by_cdx/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/warc_by_cdx/test_filter_cdx.py b/tests/warc_by_cdx/test_filter_cdx.py new file mode 100644 index 0000000..988f523 --- /dev/null +++ b/tests/warc_by_cdx/test_filter_cdx.py @@ -0,0 +1,165 @@ +import pytest +from pathlib import Path + +from cdx_toolkit.cli import main +from cdx_toolkit.filter_cdx import resolve_paths, validate_resolved_paths +from tests.conftest import requires_aws_s3 + +fixture_path = Path(__file__).parent.parent / 'data/filter_cdx' + + +@requires_aws_s3 +def test_cli_filter_cdx_with_surts(tmpdir, caplog): + # check if expected number is reached + index_path = 's3://commoncrawl/cc-index/collections' + index_glob = '/CC-MAIN-2024-30/indexes/cdx-00187.gz' + whitelist_path = fixture_path / 'whitelist_10_surts.txt' # matches on first domain and after 100k and 200k lines + + main( + args=[ + '-v', + '--limit=1140', + 'filter_cdx', + f'{index_path}', + f'{str(whitelist_path)}', + f'{tmpdir}', + '--filter-type=surt', + f'--input-glob={index_glob}' + ] + ) + + assert 'Limit reached' in caplog.text + + +@requires_aws_s3 +def test_cli_filter_cdx_with_urls(tmpdir, caplog): + # check if expected number is reached + index_path = 's3://commoncrawl/cc-index/collections' + index_glob = '/CC-MAIN-2024-30/indexes/cdx-00187.gz' + whitelist_path = fixture_path / 'whitelist_10_urls.txt' # matches on first domain and after 100k and 200k lines + + main( + args=[ + '-v', + '--limit=1140', + 'filter_cdx', + f'{index_path}', + f'{str(whitelist_path)}', + f'{tmpdir}', + '--filter-type=url', + f'--input-glob={index_glob}' + ] + ) + + assert 'Limit reached' in caplog.text + + +@requires_aws_s3 +def test_resolve_cdx_paths_from_cc_s3_to_local(tmpdir): + tmpdir = str(tmpdir) + base_path = 's3://commoncrawl/cc-index/collections' + glob_pattern = '/CC-MAIN-2016-30/indexes/*.gz' + + input_files, output_files = resolve_paths(base_path, glob_pattern, output_base_path=tmpdir) + + assert len(input_files) == len(output_files), 'Input and output count must be the same' + assert len(input_files) == 300, 'Invalid input count' + assert input_files[0] == base_path + '/CC-MAIN-2016-30/indexes/cdx-00000.gz', 'Invalid input file' + assert output_files[0] == tmpdir + '/CC-MAIN-2016-30/indexes/cdx-00000.gz', 'Invalid output file' + assert input_files[-1] == base_path + '/CC-MAIN-2016-30/indexes/cdx-00299.gz' + + +@requires_aws_s3 +def test_resolve_cdx_paths_from_cc_s3_to_another_s3(): + output_base_path = 's3://some-other-bucket/filter-cdx' + base_path = 's3://commoncrawl/cc-index/collections' + glob_pattern = '/CC-MAIN-2016-30/indexes/cdx-000*.gz' + + input_files, output_files = resolve_paths(base_path, glob_pattern, output_base_path=output_base_path) + + assert len(input_files) == len(output_files), 'Input and output count must be the same' + assert len(input_files) == 100, 'Invalid input count' + assert input_files[0] == base_path + '/CC-MAIN-2016-30/indexes/cdx-00000.gz', 'Invalid input file' + assert output_files[0] == output_base_path + '/CC-MAIN-2016-30/indexes/cdx-00000.gz', 'Invalid output file' + assert input_files[-1] == base_path + '/CC-MAIN-2016-30/indexes/cdx-00099.gz' + + +@requires_aws_s3 +def test_filter_cdx_nonexistent_surt_file_exits(tmpdir, caplog): + index_path = 's3://commoncrawl/cc-index/collections' + index_glob = '/CC-MAIN-2024-30/indexes/cdx-00187.gz' + nonexistent_surt_file = str(tmpdir / 'nonexistent_surts.txt') + + # Test that the command exits when SURT file doesn't exist + with pytest.raises(SystemExit) as exc_info: + main( + args=[ + '-v', + '--limit=1140', + 'filter_cdx', + f'{index_path}', + f'{nonexistent_surt_file}', + f'{tmpdir}', + f'--input-glob={index_glob}' + ] + ) + + assert exc_info.value.code == 1 + assert f'Filter file not found: {nonexistent_surt_file}' in caplog.text + + +def test_resolve_paths_no_files_found_exits(tmpdir, caplog): + # Test that resolve_paths exits when no files match the glob pattern + with pytest.raises(SystemExit) as exc_info: + resolve_paths(input_base_path=str(tmpdir), input_glob='/nonexistent-pattern-*.gz', output_base_path=str(tmpdir)) + + assert exc_info.value.code == 1 + assert 'No files found matching glob pattern:' in caplog.text + + +def test_validate_resolved_paths_existing_file_exits(tmpdir, caplog): + # Create an existing output file + existing_file = tmpdir / 'existing_output.txt' + existing_file.write_text('existing content', encoding='utf-8') + + output_paths = [str(existing_file)] + + # Test that validate_resolved_paths exits when output file exists and overwrite=False + with pytest.raises(SystemExit) as exc_info: + validate_resolved_paths(output_paths, overwrite=False) + + assert exc_info.value.code == 1 + assert f'Output file already exists: {str(existing_file)}' in caplog.text + assert 'Use --overwrite to overwrite existing files' in caplog.text + + +@requires_aws_s3 +def test_cli_filter_cdx_with_parallel_processing(tmpdir, caplog): + """Test that parallel processing works correctly and processes multiple files.""" + index_path = 's3://commoncrawl/cc-index/collections' + index_glob = '/CC-MAIN-2024-30/indexes/cdx-0018[78].gz' # Multiple files pattern + whitelist_path = fixture_path / 'whitelist_11_surts.txt' # Additonal entry for cdx-00188.gz + + # Run with parallel processing (2 workers) + main( + args=[ + '-v', + '--limit=10', + 'filter_cdx', + f'{index_path}', + f'{str(whitelist_path)}', + f'{tmpdir}', + '--filter-type=surt', + f'--input-glob={index_glob}', + '--parallel=2' + ] + ) + + # Check that multiple files were processed in parallel + assert 'Found' in caplog.text and 'files matching pattern' in caplog.text + assert 'File statistics for' in caplog.text + assert 'Total statistics:' in caplog.text + + # Should have processed multiple files (pattern matches 2 files: cdx-00187.gz and cdx-00188.gz) + file_stats_count = caplog.text.count('File statistics for') + assert file_stats_count == 2, 'Should process exactly 2 files with the glob pattern' diff --git a/tests/test_matcher.py b/tests/warc_by_cdx/test_matcher.py similarity index 58% rename from tests/test_matcher.py rename to tests/warc_by_cdx/test_matcher.py index 527467c..b449fc9 100644 --- a/tests/test_matcher.py +++ b/tests/warc_by_cdx/test_matcher.py @@ -3,74 +3,74 @@ @pytest.mark.parametrize( - "prefixes,test_strings,expected_results", + 'prefixes,test_strings,expected_results', [ # Basic functionality ( - ["http://", "https://"], - ["http://example.com", "https://example.com", "ftp://example.com"], + ['http://', 'https://'], + ['http://example.com', 'https://example.com', 'ftp://example.com'], [True, True, False], ), # Empty prefix list - ([], ["any string", "", "test"], [False, False, False]), + ([], ['any string', '', 'test'], [False, False, False]), # Single character prefixes ( - ["a", "b", "c"], - ["apple", "banana", "cherry", "dog", ""], + ['a', 'b', 'c'], + ['apple', 'banana', 'cherry', 'dog', ''], [True, True, True, False, False], ), # Overlapping prefixes ( - ["test", "testing", "te"], - ["test", "testing", "tea", "other"], + ['test', 'testing', 'te'], + ['test', 'testing', 'tea', 'other'], [True, True, True, False], ), # Unicode characters ( - ["café", "naïve", "résumé"], - ["café au lait", "naïve person", "résumé.pdf", "regular text"], + ['café', 'naïve', 'résumé'], + ['café au lait', 'naïve person', 'résumé.pdf', 'regular text'], [True, True, True, False], ), # Special characters ( - ["[test]", ".*", "\\n"], - ["[test] case", ".*regex", "\\newline", "normal"], + ['[test]', '.*', '\\n'], + ['[test] case', '.*regex', '\\newline', 'normal'], [True, True, True, False], ), # Case sensitivity ( - ["HTTP", "Https"], - ["HTTP://example.com", "https://example.com", "HTTPS://EXAMPLE.COM"], + ['HTTP', 'Https'], + ['HTTP://example.com', 'https://example.com', 'HTTPS://EXAMPLE.COM'], [True, False, True], ), # Very long prefixes ( - ["a" * 1000], - ["a" * 1000 + "suffix", "a" * 999, "b" * 1000], + ['a' * 1000], + ['a' * 1000 + 'suffix', 'a' * 999, 'b' * 1000], [True, False, False], ), # Duplicate prefixes ( - ["test", "test", "demo"], - ["testing", "demo version", "other"], + ['test', 'test', 'demo'], + ['testing', 'demo version', 'other'], [True, True, False], ), # Prefixes that are substrings of each other ( - ["ab", "abc", "abcd"], - ["ab", "abc", "abcd", "abcde", "a"], + ['ab', 'abc', 'abcd'], + ['ab', 'abc', 'abcd', 'abcde', 'a'], [True, True, True, True, False], ), # Numbers and mixed content ( - ["123", "4.56"], - ["123test", "4.56789", "789", "test123"], + ['123', '4.56'], + ['123test', '4.56789', '789', 'test123'], [True, True, False, False], ), # Whitespace handling (note: whitespace is stripped from prefixes, so " test" becomes "test") ( - [" test", "\tindent", "\nline"], - ["test case", "indented", "line break", " test case", "nowhitespace"], + [' test', '\tindent', '\nline'], + ['test case', 'indented', 'line break', ' test case', 'nowhitespace'], [True, True, True, False, False], ), ], @@ -86,32 +86,31 @@ def test_matcher_approaches(prefixes, test_strings, expected_results): # Both matchers should agree with each other assert tuple_result == trie_result, ( - f"TupleMatcher({tuple_result}) != TrieMatcher({trie_result}) " + f'TupleMatcher({tuple_result}) != TrieMatcher({trie_result}) ' f"for prefixes {prefixes} and string '{test_string}'" ) # Both should match the expected result assert tuple_result == expected_result, ( - f"Expected {expected_result}, got {tuple_result} " - f"for prefixes {prefixes} and string '{test_string}'" + f"Expected {expected_result}, got {tuple_result} for prefixes {prefixes} and string '{test_string}'" ) @pytest.mark.parametrize( - "invalid_prefixes,expected_error", + 'invalid_prefixes,expected_error', [ # Empty string prefixes - ([""], "Empty prefixes are not allowed"), + ([''], 'Empty prefixes are not allowed'), # Whitespace-only prefixes (should be stripped to empty and raise error) - ([" "], "Empty prefixes are not allowed"), - (["\t\n "], "Empty prefixes are not allowed"), + ([' '], 'Empty prefixes are not allowed'), + (['\t\n '], 'Empty prefixes are not allowed'), # None values - ([None], "Prefix must be a string and not none"), - (["test", None, "demo"], "Prefix must be a string and not none"), + ([None], 'Prefix must be a string and not none'), + (['test', None, 'demo'], 'Prefix must be a string and not none'), # Non-string types - ([123], "Prefix must be a string and not none"), - (["test", 456, "demo"], "Prefix must be a string and not none"), - ([[], {}, set()], "Prefix must be a string and not none"), + ([123], 'Prefix must be a string and not none'), + (['test', 456, 'demo'], 'Prefix must be a string and not none'), + ([[], {}, set()], 'Prefix must be a string and not none'), ], ) def test_prefix_validation_errors(invalid_prefixes, expected_error): @@ -125,23 +124,23 @@ def test_prefix_validation_errors(invalid_prefixes, expected_error): @pytest.mark.parametrize( - "test_string,expected", + 'test_string,expected', [ - ("test", True), - ("testing", True), - ("demo", True), - ("demonstration", True), - ("example", True), - ("examples", True), - (" test", False), # Leading whitespace in test string shouldn't match - ("other", False), + ('test', True), + ('testing', True), + ('demo', True), + ('demonstration', True), + ('example', True), + ('examples', True), + (' test', False), # Leading whitespace in test string shouldn't match + ('other', False), ], ) def test_whitespace_stripping(test_string, expected): """Test that whitespace is properly stripped from prefixes.""" # Prefixes with leading/trailing whitespace should be stripped - prefixes_with_whitespace = [" test ", "\tdemo\n", " example "] + prefixes_with_whitespace = [' test ', '\tdemo\n', ' example '] tuple_matcher = TupleMatcher(prefixes_with_whitespace) trie_matcher = TrieMatcher(prefixes_with_whitespace) @@ -151,11 +150,11 @@ def test_whitespace_stripping(test_string, expected): assert tuple_result == trie_result == expected, ( f"Whitespace stripping test failed for '{test_string}': " - f"expected {expected}, got Tuple({tuple_result}), Trie({trie_result})" + f'expected {expected}, got Tuple({tuple_result}), Trie({trie_result})' ) -@pytest.mark.parametrize("test_string", ["anything", "", "test", "a", "123"]) +@pytest.mark.parametrize('test_string', ['anything', '', 'test', 'a', '123']) def test_empty_prefix_list(test_string): """Test with empty prefix list - should never match anything.""" empty_prefixes = [] @@ -167,16 +166,16 @@ def test_empty_prefix_list(test_string): trie_result = trie_matcher.matches(test_string) # Both should return False for empty prefix list - assert tuple_result == trie_result == False, ( + assert not tuple_result and not trie_result, ( f"Both matchers should return False for '{test_string}' with empty prefixes, " - f"got Tuple({tuple_result}), Trie({trie_result})" + f'got Tuple({tuple_result}), Trie({trie_result})' ) def test_empty_string_against_prefixes(): """Test matching empty strings against non-empty prefixes.""" - non_empty_prefixes = ["test", "demo", "example"] - empty_test_string = "" + non_empty_prefixes = ['test', 'demo', 'example'] + empty_test_string = '' tuple_matcher = TupleMatcher(non_empty_prefixes) trie_matcher = TrieMatcher(non_empty_prefixes) @@ -185,28 +184,28 @@ def test_empty_string_against_prefixes(): trie_result = trie_matcher.matches(empty_test_string) # Both should return False when testing empty string against non-empty prefixes - assert tuple_result == trie_result == False, ( - f"Both matchers should return False for empty string with non-empty prefixes, " - f"got Tuple({tuple_result}), Trie({trie_result})" + assert not tuple_result and not trie_result, ( + f'Both matchers should return False for empty string with non-empty prefixes, ' + f'got Tuple({tuple_result}), Trie({trie_result})' ) @pytest.mark.parametrize( - "test_string,expected", + 'test_string,expected', [ - ("a", True), - ("1", True), - ("!", True), - ("ab", True), - ("12", True), - ("!@", True), - ("other", False), - ("", False), + ('a', True), + ('1', True), + ('!', True), + ('ab', True), + ('12', True), + ('!@', True), + ('other', False), + ('', False), ], ) def test_single_character_edge_cases(test_string, expected): """Test single character prefixes and strings (without empty prefixes).""" - prefixes = ["a", "1", "!"] + prefixes = ['a', '1', '!'] tuple_matcher = TupleMatcher(prefixes) trie_matcher = TrieMatcher(prefixes) @@ -214,16 +213,16 @@ def test_single_character_edge_cases(test_string, expected): tuple_result = tuple_matcher.matches(test_string) trie_result = trie_matcher.matches(test_string) - assert ( - tuple_result == trie_result == expected - ), f"Mismatch for '{test_string}': Tuple({tuple_result}), Trie({trie_result}), Expected({expected})" + assert tuple_result == trie_result == expected, ( + f"Mismatch for '{test_string}': Tuple({tuple_result}), Trie({trie_result}), Expected({expected})" + ) def test_performance_with_many_prefixes(): """Test with a large number of prefixes to ensure both matchers handle it.""" # Create many prefixes - prefixes = [f"prefix_{i}" for i in range(1000)] - test_strings = ["prefix_500test", "prefix_999", "nomatch", "prefix_1000"] + prefixes = [f'prefix_{i}' for i in range(1000)] + test_strings = ['prefix_500test', 'prefix_999', 'nomatch', 'prefix_1000'] tuple_matcher = TupleMatcher(prefixes) trie_matcher = TrieMatcher(prefixes) @@ -235,22 +234,22 @@ def test_performance_with_many_prefixes(): @pytest.mark.parametrize( - "test_string,expected", + 'test_string,expected', [ - ("", False), - ("a", True), - ("ab", True), - ("abc", True), - ("abcd", True), - ("abcde", True), - ("abcdef", True), - ("b", False), - ("ac", True), + ('', False), + ('a', True), + ('ab', True), + ('abc', True), + ('abcd', True), + ('abcde', True), + ('abcdef', True), + ('b', False), + ('ac', True), ], ) def test_nested_prefixes(test_string, expected): """Test with prefixes that are nested within each other.""" - prefixes = ["a", "ab", "abc", "abcd", "abcde"] + prefixes = ['a', 'ab', 'abc', 'abcd', 'abcde'] tuple_matcher = TupleMatcher(prefixes) trie_matcher = TrieMatcher(prefixes) @@ -260,23 +259,23 @@ def test_nested_prefixes(test_string, expected): assert tuple_result == trie_result == expected, ( f"Nested prefix test failed for '{test_string}': " - f"expected {expected}, got Tuple({tuple_result}), Trie({trie_result})" + f'expected {expected}, got Tuple({tuple_result}), Trie({trie_result})' ) @pytest.mark.parametrize( - "test_string,expected", + 'test_string,expected', [ - ("🌟test", True), - ("café au lait", True), - ("𝓤𝓷𝓲𝓬𝓸𝓭𝓮 text", True), - ("regular", False), - ("", False), + ('🌟test', True), + ('café au lait', True), + ('𝓤𝓷𝓲𝓬𝓸𝓭𝓮 text', True), + ('regular', False), + ('', False), ], ) def test_unicode_edge_cases(test_string, expected): """Test Unicode handling edge cases (without empty prefixes).""" - prefixes = ["🌟", "café", "𝓤𝓷𝓲𝓬𝓸𝓭𝓮"] + prefixes = ['🌟', 'café', '𝓤𝓷𝓲𝓬𝓸𝓭𝓮'] tuple_matcher = TupleMatcher(prefixes) trie_matcher = TrieMatcher(prefixes) @@ -284,16 +283,16 @@ def test_unicode_edge_cases(test_string, expected): tuple_result = tuple_matcher.matches(test_string) trie_result = trie_matcher.matches(test_string) - assert ( - tuple_result == trie_result == expected - ), f"Unicode mismatch for '{test_string}': Tuple({tuple_result}), Trie({trie_result}), Expected({expected})" + assert tuple_result == trie_result == expected, ( + f"Unicode mismatch for '{test_string}': Tuple({tuple_result}), Trie({trie_result}), Expected({expected})" + ) def test_with_list_and_tuple_inputs(): """Test that both list and tuple inputs work identically.""" - prefixes_list = ["test", "demo", "example"] - prefixes_tuple = ("test", "demo", "example") - test_strings = ["testing", "demo version", "example.com", "other"] + prefixes_list = ['test', 'demo', 'example'] + prefixes_tuple = ('test', 'demo', 'example') + test_strings = ['testing', 'demo version', 'example.com', 'other'] # Test with list input tuple_matcher_list = TupleMatcher(prefixes_list) @@ -312,7 +311,4 @@ def test_with_list_and_tuple_inputs(): trie_matcher_tuple.matches(test_string), ] - assert all( - r == results[0] for r in results - ), f"Inconsistent results for '{test_string}': {results}" - + assert all(r == results[0] for r in results), f"Inconsistent results for '{test_string}': {results}" diff --git a/tests/test_warc_by_cdx.py b/tests/warc_by_cdx/test_warc_by_cdx.py similarity index 51% rename from tests/test_warc_by_cdx.py rename to tests/warc_by_cdx/test_warc_by_cdx.py index 3ed7b64..791cfe0 100644 --- a/tests/test_warc_by_cdx.py +++ b/tests/warc_by_cdx/test_warc_by_cdx.py @@ -1,5 +1,6 @@ import os from pathlib import Path +from typing import List import fsspec from cdx_toolkit.cli import main @@ -12,26 +13,41 @@ import pytest from warcio.archiveiterator import ArchiveIterator -from conftest import requires_aws_s3 +from tests.conftest import requires_aws_s3 -fixture_path = Path(__file__).parent / "data/warc_by_cdx" +fixture_path = Path(__file__).parent.parent / 'data/warc_by_cdx' -def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args=""): +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: None | List[str] = None): # test cli and check output - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' + + if extra_args is None: + extra_args = [] main( - args=f"""-v --cc --limit 10 warc_by_cdx {str(index_path)} --write-index-as-record --prefix {str(base_prefix)}/TEST_warc_by_index --creator foo --operator bob --warc-download-prefix {warc_download_prefix} {extra_args}""".split() + args=[ + '-v', + '--cc', + '--limit=10', + 'warc_by_cdx', + f'{str(index_path)}', + '--write-index-as-record', + f'--prefix={str(base_prefix)}/TEST_warc_by_index', + '--creator=foo', + '--operator=bob', + f'--warc-download-prefix={warc_download_prefix}', + ] + + extra_args ) # Check log - assert "Limit reached" in caplog.text + assert 'Limit reached' in caplog.text # Validate extracted WARC - warc_filename = "TEST_warc_by_index-000000.extracted.warc.gz" - warc_path = str(base_prefix) + "/" + warc_filename + warc_filename = 'TEST_warc_by_index-000000.extracted.warc.gz' + warc_path = str(base_prefix) + '/' + warc_filename resource_record = None info_record = None response_records = [] @@ -39,11 +55,11 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args with fsspec.open(warc_path, 'rb') as stream: for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': - info_record = record.content_stream().read().decode("utf-8") - + info_record = record.content_stream().read().decode('utf-8') + if record.rec_type == 'response': response_records.append(record) - + if record.rec_type == 'resource': resource_record = record @@ -52,76 +68,108 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args assert resource_record.length == 568010 assert info_record is not None - assert "operator: bob" in info_record + assert 'operator: bob' in info_record def test_cli_warc_by_cdx_over_http(tmpdir, caplog): - assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog) + assert_cli_warc_by_cdx('https://data.commoncrawl.org', base_prefix=tmpdir, caplog=caplog) + def test_cli_warc_by_cdx_over_http_in_parallel(tmpdir, caplog): - assert_cli_warc_by_cdx("https://data.commoncrawl.org", base_prefix=tmpdir, caplog=caplog, extra_args=" --parallel 3") + assert_cli_warc_by_cdx( + 'https://data.commoncrawl.org', base_prefix=tmpdir, caplog=caplog, extra_args=['--parallel=3'] + ) + @requires_aws_s3 def test_cli_warc_by_cdx_over_s3(tmpdir, caplog): - assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix=tmpdir, caplog=caplog) + assert_cli_warc_by_cdx('s3://commoncrawl', base_prefix=tmpdir, caplog=caplog) + @requires_aws_s3 def test_cli_warc_by_cdx_over_s3_to_s3(tmpdir, caplog): - assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog) + assert_cli_warc_by_cdx( + 's3://commoncrawl', base_prefix='s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs' + str(tmpdir), caplog=caplog + ) + @requires_aws_s3 def test_cli_warc_by_cdx_over_s3_to_s3_in_parallel(tmpdir, caplog): - assert_cli_warc_by_cdx("s3://commoncrawl", base_prefix="s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs" + str(tmpdir), caplog=caplog, extra_args=" --parallel 3") + assert_cli_warc_by_cdx( + 's3://commoncrawl', + base_prefix='s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs' + str(tmpdir), + caplog=caplog, + extra_args=['--parallel=3'], + ) def test_get_caputure_objects_from_index(): - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' for obj in generate_caputure_objects_from_index(get_index_as_string_from_path(index_path).splitlines()): break - assert obj.data["length"] == "9754" + assert obj.data['length'] == '9754' def test_warc_by_cdx_no_index_files_found_exits(tmpdir, caplog): # Test that warc_by_cdx exits when no index files match the glob pattern with pytest.raises(SystemExit) as exc_info: main( - args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ warc_by_cdx {str(tmpdir)} --prefix {str(tmpdir)}/TEST --index-glob "/nonexistent-pattern-*.gz" """.split() + args=[ + '-v', + '--cc', + '--cc-mirror=https://index.commoncrawl.org/', + 'warc_by_cdx', + f'{str(tmpdir)}', + f'--prefix={str(tmpdir)}/TEST', + '--index-glob=/nonexistent-pattern-*.gz', + ] ) - + assert exc_info.value.code == 1 - assert "no index files found" in caplog.text + assert 'no index files found' in caplog.text -def test_generate_caputure_objects_invalid_cdx_line(): +def test_generate_caputure_objects_invalid_cdx_line(): # Test invalid CDX line parsing (line with wrong number of columns) with pytest.raises(ValueError): - list(generate_caputure_objects_from_index("invalid-format")) + list(generate_caputure_objects_from_index('invalid-format')) def test_generate_caputure_objects_with_limit(): # Test limit functionality in get_caputure_objects_from_index - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' index_content = get_index_as_string_from_path(index_path) - + # Count objects with limit=2 objects = list(generate_caputure_objects_from_index(index_content.splitlines(), limit=2)) - + # Should stop after 2 objects assert len(objects) == 2 def test_warc_by_cdx_subprefix_and_metadata(tmpdir): # Test subprefix functionality and creator/operator metadata - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' main( - args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 1 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST --subprefix SUB --creator test_creator --operator test_operator""".split() + args=[ + '-v', + '--cc', + '--cc-mirror=https://index.commoncrawl.org/', + '--limit=1', + 'warc_by_cdx', + f'{str(index_path)}', + f'--prefix={str(tmpdir)}/TEST', + '--subprefix=SUB', + '--creator=test_creator', + '--operator=test_operator', + ] ) # Check that WARC file was created with subprefix - warc_path = os.path.join(tmpdir, "TEST-SUB-000000.extracted.warc.gz") + warc_path = os.path.join(tmpdir, 'TEST-SUB-000000.extracted.warc.gz') assert os.path.exists(warc_path) # Validate metadata in warcinfo record @@ -129,24 +177,32 @@ def test_warc_by_cdx_subprefix_and_metadata(tmpdir): with open(warc_path, 'rb') as stream: for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': - info_record = record.content_stream().read().decode("utf-8") + info_record = record.content_stream().read().decode('utf-8') break assert info_record is not None - assert "creator: test_creator" in info_record - assert "operator: test_operator" in info_record + assert 'creator: test_creator' in info_record + assert 'operator: test_operator' in info_record def test_warc_by_cdx_without_creator_operator(tmpdir): # Test that creator and operator are optional (lines 44-47) - index_path = fixture_path / "filtered_CC-MAIN-2024-30_cdx-00187.gz" + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' main( - args=f"""-v --cc --cc-mirror https://index.commoncrawl.org/ --limit 1 warc_by_cdx {str(index_path)} --prefix {str(tmpdir)}/TEST_NO_META""".split() + args=[ + '-v', + '--cc', + '--cc-mirror=https://index.commoncrawl.org/', + '--limit=1', + 'warc_by_cdx', + f'{str(index_path)}', + f'--prefix={str(tmpdir)}/TEST_NO_META', + ] ) # Check that WARC file was created - warc_path = os.path.join(tmpdir, "TEST_NO_META-000000.extracted.warc.gz") + warc_path = os.path.join(tmpdir, 'TEST_NO_META-000000.extracted.warc.gz') assert os.path.exists(warc_path) # Validate that creator/operator are not in warcinfo record @@ -154,9 +210,9 @@ def test_warc_by_cdx_without_creator_operator(tmpdir): with open(warc_path, 'rb') as stream: for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': - info_record = record.content_stream().read().decode("utf-8") + info_record = record.content_stream().read().decode('utf-8') break assert info_record is not None - assert "creator:" not in info_record - assert "operator:" not in info_record + assert 'creator:' not in info_record + assert 'operator:' not in info_record diff --git a/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py b/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py new file mode 100644 index 0000000..69a50ab --- /dev/null +++ b/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py @@ -0,0 +1,105 @@ +from io import BytesIO +from pathlib import Path +from typing import List + +import fsspec +from cdx_toolkit.cli import main +from warcio.archiveiterator import ArchiveIterator + +from tests.conftest import requires_aws_s3 + +from warcio import WARCWriter + +fixture_path = Path(__file__).parent.parent / 'data/warc_by_cdx' + + +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: None | List[str] = None): + # test cli and check output + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' + if extra_args is None: + extra_args = [] + + # --write-index-as-record + + main( + args=[ + '-v', + '--cc', + '--limit=10', + 'warc_by_cdx', + str(index_path), + f'--prefix={str(base_prefix)}/TEST_warc_by_index', + '--creator=foo', + '--operator=bob', + f'--warc-download-prefix={warc_download_prefix}', + ] + + extra_args, + ) + + # Check log + assert 'Limit reached' in caplog.text + + # Validate extracted WARC + warc_filename = 'TEST_warc_by_index-000000.extracted.warc.gz' + warc_path = str(base_prefix) + '/' + warc_filename + resource_record = None + info_record = None + response_records = [] + response_contents = [] + + with fsspec.open(warc_path, 'rb') as stream: + for record in ArchiveIterator(stream): + if record.rec_type == 'warcinfo': + info_record = record.content_stream().read().decode('utf-8') + + if record.rec_type == 'response': + response_records.append(record) + response_contents.append(record.content_stream().read().decode('utf-8', errors='ignore')) + + # if record.rec_type == 'resource': + # resource_record = record + + assert len(response_records) == 10, 'Invalid record count' + # assert resource_record is not None + # assert resource_record.length == 568010 + + assert 'Catalogue en ligne Mission de France' in response_contents[0], 'Invalid response content' + assert 'dojo/dijit/themes/tundra/tundra' in response_contents[9], 'Invalid response content' + assert info_record is not None + assert 'operator: bob' in info_record, 'Invalid WARC info' + + +@requires_aws_s3 +def test_cli_warc_by_cdx_over_s3_to_s3_in_parallel_aioboto3(tmpdir, caplog): + assert_cli_warc_by_cdx( + 's3://commoncrawl', + base_prefix='s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs' + str(tmpdir), + caplog=caplog, + extra_args=[ + '--parallel=3', + '--implementation=aioboto3', + ], + ) + + +def test_warc_info(): + warc_version = '1.0' + gzip = False + file_handler = BytesIO() + filename = 'foo.warc' + + info = { + 'software': 'pypi_cdx_toolkit/123', + 'isPartOf': 'bar', + 'description': 'warc extraction based on CDX generated with: xx', + 'format': 'WARC file version 1.0', + } + + writer = WARCWriter(file_handler, gzip=gzip, warc_version=warc_version) + warcinfo = writer.create_warcinfo_record(filename, info) + + writer.write_record(warcinfo) + + file_value = file_handler.getvalue().decode('utf-8') + + assert 'pypi_cdx_toolkit/123' in file_value diff --git a/tests/warc_by_cdx/test_warc_from_fs.py b/tests/warc_by_cdx/test_warc_from_fs.py new file mode 100644 index 0000000..ccceaf0 --- /dev/null +++ b/tests/warc_by_cdx/test_warc_from_fs.py @@ -0,0 +1,53 @@ +from tests.conftest import requires_aws_s3 +from cdx_toolkit.warc import fetch_warc_record + + +def test_fetch_warc_record_from_http(): + encoding = 'utf-8' + capture = { + 'url': 'https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319', + 'mime': 'text/html', + 'mime-detected': 'application/xhtml+xml', + 'status': '200', + 'digest': 'D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP', + 'length': '9754', + 'offset': '111440525', + 'filename': 'crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz', + 'charset': 'UTF-8', + 'languages': 'fra', + 'timestamp': '20240716153155', + } + warc_download_prefix = 'https://data.commoncrawl.org' + + record = fetch_warc_record(capture, warc_download_prefix) + record_content = record.content_stream().read().decode(encoding, errors='ignore') + + assert record.rec_type == 'response' + assert record.length == 75825 + assert 'Catalogue en ligne Mission de France' in record_content + + +@requires_aws_s3 +def test_fetch_warc_record_from_s3(): + encoding = 'utf-8' + capture = { + 'url': 'https://bibliotheque.missiondefrance.fr/index.php?lvl=bulletin_display&id=319', + 'mime': 'text/html', + 'mime-detected': 'application/xhtml+xml', + 'status': '200', + 'digest': 'D5K3FUWDRAOMMTJC2CTWV7L2ABFIJ5BP', + 'length': '9754', + 'offset': '111440525', + 'filename': 'crawl-data/CC-MAIN-2024-30/segments/1720763514759.37/warc/CC-MAIN-20240716142214-20240716172214-00337.warc.gz', + 'charset': 'UTF-8', + 'languages': 'fra', + 'timestamp': '20240716153155', + } + warc_download_prefix = 's3://commoncrawl' + + record = fetch_warc_record(capture, warc_download_prefix) + record_content = record.content_stream().read().decode(encoding, errors='ignore') + + assert record.rec_type == 'response' + assert record.length == 75825 + assert 'Catalogue en ligne Mission de France' in record_content diff --git a/tests/test_warc_writer.py b/tests/warc_by_cdx/test_warc_writer.py similarity index 66% rename from tests/test_warc_writer.py rename to tests/warc_by_cdx/test_warc_writer.py index 78cbaee..70ca45b 100644 --- a/tests/test_warc_writer.py +++ b/tests/warc_by_cdx/test_warc_writer.py @@ -1,52 +1,52 @@ from io import BytesIO -import os import fsspec import pytest import cdx_toolkit -from conftest import requires_aws_s3 +from tests.conftest import requires_aws_s3 from warcio import WARCWriter -from warcio.recordloader import ArcWarcRecord from warcio.archiveiterator import ArchiveIterator + @pytest.mark.parametrize( - "prefix,gzip", + 'prefix,gzip', [ - pytest.param("test-prefix", False, id="File name prefix on local"), - pytest.param("test-prefix", True, id="File name prefix on local with gzip"), - - # pytest.param("test-prefix-folder/file-prefix", None, id="Folder as prefix"), # raised FileNotFound error (parent dir does not exist) + pytest.param('test-prefix', False, id='File name prefix on local'), + pytest.param('test-prefix', True, id='File name prefix on local with gzip'), + # raised FileNotFound error (parent dir does not exist) + # pytest.param("test-prefix-folder/file-prefix", None, id="Folder as prefix"), ], ) def test_write_to_local(prefix, gzip, tmpdir): info = { 'software': 'pypi_cdx_toolkit/test', 'description': 'test', - 'format': 'WARC file version 1.0', + 'format': 'WARC file version 1.0', } - encoding = "utf-8" - full_prefix = str(tmpdir) + "/" + prefix + encoding = 'utf-8' + full_prefix = str(tmpdir) + '/' + prefix fs, fs_prefix_path = fsspec.url_to_fs(full_prefix) writer = cdx_toolkit.warc.get_writer(full_prefix, None, info, gzip=gzip) # single record - input_resource_record_text = "foo bar text" - writer.write_record(WARCWriter(None).create_warc_record( - uri="foo/bar", - record_type="resource", + input_resource_record_text = 'foo bar text' + writer.write_record( + WARCWriter(None).create_warc_record( + uri='foo/bar', + record_type='resource', payload=BytesIO(input_resource_record_text.encode(encoding)), - warc_content_type="text/plain", + warc_content_type='text/plain', ) ) writer.close() # Check that WARC file was created - warc_path = fs_prefix_path + "-000000.extracted.warc" + warc_path = fs_prefix_path + '-000000.extracted.warc' if gzip: - warc_path += ".gz" - + warc_path += '.gz' + assert fs.exists(warc_path) # Validate that creator/operator are not in warcinfo record @@ -56,7 +56,7 @@ def test_write_to_local(prefix, gzip, tmpdir): for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': info_record = record.content_stream().read().decode(encoding) - + if record.rec_type == 'resource': resource_record = record.content_stream().read().decode(encoding) break @@ -64,24 +64,24 @@ def test_write_to_local(prefix, gzip, tmpdir): assert resource_record is not None assert info_record is not None - assert "description: test" in info_record + assert 'description: test' in info_record assert resource_record == input_resource_record_text @requires_aws_s3 @pytest.mark.parametrize( - "prefix", + 'prefix', [ - pytest.param("s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs", id="S3 prefix"), + pytest.param('s3://commoncrawl-dev/cdx_toolkit/ci/test-outputs', id='S3 prefix'), ], ) def test_write_to_s3(prefix, tmpdir): info = { 'software': 'pypi_cdx_toolkit/test', 'description': 'test', - 'format': 'WARC file version 1.0', + 'format': 'WARC file version 1.0', } - encoding = "utf-8" + encoding = 'utf-8' full_prefix = prefix + str(tmpdir) # append tmp dir on S3 fs, fs_prefix_path = fsspec.url_to_fs(full_prefix) @@ -92,18 +92,19 @@ def test_write_to_s3(prefix, tmpdir): writer = cdx_toolkit.warc.get_writer(full_prefix, None, info) # single record - input_resource_record_text = "foo bar text" - writer.write_record(WARCWriter(None).create_warc_record( - uri="foo/bar", - record_type="resource", + input_resource_record_text = 'foo bar text' + writer.write_record( + WARCWriter(None).create_warc_record( + uri='foo/bar', + record_type='resource', payload=BytesIO(input_resource_record_text.encode(encoding)), - warc_content_type="text/plain", + warc_content_type='text/plain', ) ) writer.close() # Check that WARC file was created - warc_path = fs_prefix_path + "-000000.extracted.warc.gz" + warc_path = fs_prefix_path + '-000000.extracted.warc.gz' assert fs.exists(warc_path) # Validate that creator/operator are not in warcinfo record @@ -113,7 +114,7 @@ def test_write_to_s3(prefix, tmpdir): for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': info_record = record.content_stream().read().decode(encoding) - + if record.rec_type == 'resource': resource_record = record.content_stream().read().decode(encoding) break @@ -121,5 +122,5 @@ def test_write_to_s3(prefix, tmpdir): assert resource_record is not None assert info_record is not None - assert "description: test" in info_record + assert 'description: test' in info_record assert resource_record == input_resource_record_text From d45a3da5c1a1a66675dd0dedba800fe488f143cb Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 17 Sep 2025 11:03:45 +0000 Subject: [PATCH 20/23] fixing type hints for py38 --- cdx_toolkit/filter_cdx/matcher.py | 10 +++---- cdx_toolkit/warcer_by_cdx/__init__.py | 4 +-- cdx_toolkit/warcer_by_cdx/aioboto3_utils.py | 7 ++--- cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py | 30 ++++++++----------- cdx_toolkit/warcer_by_cdx/aioboto3_writer.py | 8 ++--- cdx_toolkit/warcer_by_cdx/cdx_utils.py | 7 +++-- cdx_toolkit/warcer_by_cdx/fsspec_warcer.py | 8 ++--- tests/warc_by_cdx/test_warc_by_cdx.py | 4 +-- .../warc_by_cdx/test_warc_by_cdx_aioboto3.py | 4 +-- 9 files changed, 38 insertions(+), 44 deletions(-) diff --git a/cdx_toolkit/filter_cdx/matcher.py b/cdx_toolkit/filter_cdx/matcher.py index c10400a..d6da16d 100644 --- a/cdx_toolkit/filter_cdx/matcher.py +++ b/cdx_toolkit/filter_cdx/matcher.py @@ -1,4 +1,4 @@ -from typing import List, Tuple +from typing import List, Tuple, Union import logging from abc import ABC, abstractmethod @@ -9,7 +9,7 @@ class Matcher(ABC): """Base class for all matching approaches.""" @abstractmethod - def __init__(self, prefixes: Tuple[str] | List[str]): + def __init__(self, prefixes: Union[Tuple[str], List[str]]): """Initialize the matcher with a list of prefixes.""" pass @@ -19,7 +19,7 @@ def matches(self, text: str) -> bool: pass @staticmethod - def validate_prefixes(prefixes: Tuple[str] | List[str]) -> Tuple[str]: + def validate_prefixes(prefixes: Union[Tuple[str], List[str]]) -> Tuple[str]: valid_prefixes = [] for prefix in prefixes: @@ -46,7 +46,7 @@ def __init__(self): class TrieMatcher(Matcher): """Trie-based matching approach.""" - def __init__(self, prefixes: Tuple[str] | List[str]): + def __init__(self, prefixes: Union[Tuple[str], List[str]]): logger.info(f'Building trie matcher based on {len(prefixes):,} inputs') self.root = self._build_trie(self.validate_prefixes(prefixes)) @@ -77,7 +77,7 @@ def matches(self, text: str) -> bool: class TupleMatcher(Matcher): """Tuple-based matching approach using the built-in method `str.startswith`.""" - def __init__(self, prefixes: Tuple[str] | List[str]): + def __init__(self, prefixes: Union[Tuple[str], List[str]]): logger.info(f'Building Tuple matcher based on {len(prefixes):,} inputs') self.prefixes_Tuple = self.validate_prefixes(prefixes) diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index ee5e932..ca6f36b 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -1,7 +1,7 @@ import logging import sys import time -from typing import List, Literal +from typing import List, Literal, Optional import fsspec @@ -109,7 +109,7 @@ def run_warcer_by_cdx(args, cmdline): logger.info(f'Script execution time: {execution_time:.3f} seconds') -def get_index_paths(index_path: str, index_glob: str | None = None) -> List[str]: +def get_index_paths(index_path: str, index_glob: Optional[str] = None) -> List[str]: if index_glob is None: # Read from a single index index_paths = [index_path] diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py index 3c5350d..40f5457 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py @@ -2,8 +2,7 @@ import logging import time from dataclasses import dataclass - -import logging +from typing import Dict, List, Optional from botocore.exceptions import ClientError, EndpointConnectionError @@ -135,7 +134,7 @@ async def mpu_create( bucket: str, key: str, *, - content_type: str | None, + content_type: Optional[str], max_attempts: int, base_backoff_seconds: float, ): @@ -181,7 +180,7 @@ async def mpu_complete( bucket: str, key: str, upload_id: str, - parts: list[dict], + parts: List[Dict], max_attempts: int, base_backoff_seconds: float, ): diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py index 9e25bd0..f19e44d 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py @@ -1,7 +1,7 @@ import asyncio from io import BytesIO import logging -from typing import List +from typing import List, Optional, Dict import aioboto3 from botocore.config import Config @@ -27,14 +27,14 @@ def filter_warc_by_cdx_via_aioboto3( index_paths: List[str], prefix_path: str, - writer_info: dict, - writer_subprefix: str | None = None, + writer_info: Dict, + writer_subprefix: Optional[str] = None, write_index_as_record: bool = False, limit: int = 0, log_every_n: int = 1000, - warc_download_prefix: str | None = None, + warc_download_prefix: Optional[str] = None, n_parallel: int = 1, - writer_kwargs: dict | None = None, + writer_kwargs: Optional[Dict] = None, ) -> int: try: return asyncio.run( @@ -60,14 +60,14 @@ def filter_warc_by_cdx_via_aioboto3( async def filter_warc_by_cdx_via_aioboto3_async( index_paths: List[str], prefix_path: str, - writer_info: dict, - writer_subprefix: str | None = None, + writer_info: Dict, + writer_subprefix: Optional[str] = None, write_index_as_record: bool = False, limit: int = 0, log_every_n: int = 1000, - warc_download_prefix: str | None = None, + warc_download_prefix: Optional[str] = None, n_parallel: int = 1, - writer_kwargs: dict | None = None, + writer_kwargs: Optional[Dict] = None, max_attempts: int = 5, key_queue_size: int = 1000, item_queue_size: int = 200, @@ -280,19 +280,13 @@ async def consumer( consumer_id: int, item_queue: asyncio.Queue, s3, - # shard_name_prefix: str, - # shard_extension: str, - # dest_prefix: str, - # dest_bucket: str, - # content_type: str | None, - # min_part_size: int, max_attempts: int, base_backoff_seconds: float, prefix_path: str, - writer_info: dict, - writer_subprefix: str | None = None, + writer_info: Dict, + writer_subprefix: Optional[str] = None, write_index_as_record: bool = False, - writer_kwargs: dict | None = None, + writer_kwargs: Optional[Dict] = None, warc_version: str = '1.0', log_every_n: int = 1000, gzip: bool = False, diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py index b38135d..f262a88 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_writer.py @@ -1,5 +1,5 @@ import logging -from typing import List, Dict +from typing import List, Dict, Optional from cdx_toolkit.warcer_by_cdx.aioboto3_utils import ( mpu_abort, @@ -18,7 +18,7 @@ def __init__( self, shard_key: str, dest_bucket: str, - content_type: str | None, + content_type: Optional[str], min_part_size: int, max_attempts: int, base_backoff_seconds: float, @@ -29,7 +29,7 @@ def __init__( self.min_part_size = min_part_size self.max_attempts = max_attempts self.base_backoff_seconds = base_backoff_seconds - self.upload_id: str | None = None + self.upload_id: Optional[str] = None self.part_number = 1 self.parts: List[Dict] = [] self.buffer = bytearray() @@ -63,8 +63,6 @@ async def _flush_full_parts(self, s3): self.part_number += 1 async def write(self, s3, data: bytes): - # self.buffer.extend(transform(data)) - # TODO write proper WARC record? self.buffer.extend(data) await self._flush_full_parts(s3) diff --git a/cdx_toolkit/warcer_by_cdx/cdx_utils.py b/cdx_toolkit/warcer_by_cdx/cdx_utils.py index 822f6fd..93179a5 100644 --- a/cdx_toolkit/warcer_by_cdx/cdx_utils.py +++ b/cdx_toolkit/warcer_by_cdx/cdx_utils.py @@ -2,7 +2,7 @@ from pathlib import Path from io import BytesIO -from typing import Iterable +from typing import Iterable, Optional, Union import fsspec import logging @@ -14,7 +14,10 @@ logger = logging.getLogger(__name__) -def get_index_as_string_from_path(index_path: str | Path, index_fs: None | fsspec.AbstractFileSystem = None) -> str: +def get_index_as_string_from_path( + index_path: Union[str, Path], + index_fs: Optional[fsspec.AbstractFileSystem] = None + ) -> str: """Fetch (and decompress) index content as string from local or remote path.""" logger.info('Fetching index from %s ...', index_path) if index_fs is None: diff --git a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py index 1cc5442..f170279 100644 --- a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py @@ -1,6 +1,6 @@ import json import logging -from typing import Dict, Iterable, List +from typing import Dict, Iterable, List, Optional import cdx_toolkit from concurrent.futures import ThreadPoolExecutor, as_completed @@ -17,13 +17,13 @@ def filter_warc_by_cdx_via_fsspec( index_paths: List[str], prefix_path: str, writer_info: Dict, - writer_subprefix: str | None = None, + writer_subprefix: Optional[str] = None, write_index_as_record: bool = False, limit: int = 0, log_every_n: int = 1000, - warc_download_prefix: str | None = None, + warc_download_prefix: Optional[str] = None, n_parallel: int = 1, - writer_kwargs: Dict | None = None, + writer_kwargs: Optional[Dict] = None, ) -> int: writer = cdx_toolkit.warc.get_writer( prefix_path, diff --git a/tests/warc_by_cdx/test_warc_by_cdx.py b/tests/warc_by_cdx/test_warc_by_cdx.py index 791cfe0..fc80ae2 100644 --- a/tests/warc_by_cdx/test_warc_by_cdx.py +++ b/tests/warc_by_cdx/test_warc_by_cdx.py @@ -1,6 +1,6 @@ import os from pathlib import Path -from typing import List +from typing import List, Optional import fsspec from cdx_toolkit.cli import main @@ -19,7 +19,7 @@ fixture_path = Path(__file__).parent.parent / 'data/warc_by_cdx' -def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: None | List[str] = None): +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: Optional[List[str]] = None): # test cli and check output index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' diff --git a/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py b/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py index 69a50ab..10dd118 100644 --- a/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py +++ b/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py @@ -1,6 +1,6 @@ from io import BytesIO from pathlib import Path -from typing import List +from typing import List, Optional import fsspec from cdx_toolkit.cli import main @@ -13,7 +13,7 @@ fixture_path = Path(__file__).parent.parent / 'data/warc_by_cdx' -def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: None | List[str] = None): +def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: Optional[List[str]] = None): # test cli and check output index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' if extra_args is None: From a81a2b4ca536196d2140904a0c39cedd50f79785 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 17 Sep 2025 11:10:13 +0000 Subject: [PATCH 21/23] fixed types and fail fast --- .github/workflows/ci-feat-warc-by-cdx.yaml | 2 +- cdx_toolkit/warcer_by_cdx/aioboto3_utils.py | 7 ++++--- cdx_toolkit/warcer_by_cdx/cdx_utils.py | 6 +++--- 3 files changed, 8 insertions(+), 7 deletions(-) diff --git a/.github/workflows/ci-feat-warc-by-cdx.yaml b/.github/workflows/ci-feat-warc-by-cdx.yaml index 80bb1bc..8688e8c 100644 --- a/.github/workflows/ci-feat-warc-by-cdx.yaml +++ b/.github/workflows/ci-feat-warc-by-cdx.yaml @@ -12,7 +12,7 @@ jobs: unit-tests: runs-on: ${{ matrix.os }} strategy: - fail-fast: false + fail-fast: true max-parallel: 1 # avoids ever triggering a rate limit matrix: python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py index 40f5457..adbfd05 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py @@ -3,6 +3,7 @@ import time from dataclasses import dataclass from typing import Dict, List, Optional +from os import urandom from botocore.exceptions import ClientError, EndpointConnectionError @@ -61,11 +62,11 @@ class RangePayload: def _backoff(attempt: int, base_backoff_seconds: float) -> float: + """Time to sleep based on number of attempts""" base = base_backoff_seconds * (2 ** (attempt - 1)) - # jitter ±20% - import os as _os - return max(0.05, base * (0.8 + 0.4 * _os.urandom(1)[0] / 255)) + # Add random jitter between 80-120% of base delay + return max(0.05, base * (0.8 + 0.4 * urandom(1)[0] / 255)) def parse_s3_uri(uri: str) -> tuple[str, str]: diff --git a/cdx_toolkit/warcer_by_cdx/cdx_utils.py b/cdx_toolkit/warcer_by_cdx/cdx_utils.py index 93179a5..4611478 100644 --- a/cdx_toolkit/warcer_by_cdx/cdx_utils.py +++ b/cdx_toolkit/warcer_by_cdx/cdx_utils.py @@ -2,7 +2,7 @@ from pathlib import Path from io import BytesIO -from typing import Iterable, Optional, Union +from typing import Iterable, Optional, Tuple, Union import fsspec import logging @@ -43,7 +43,7 @@ def get_index_record(index: str, index_path: str, encoding: str = 'utf-8') -> Ar ) -def read_cdx_line(line: str, warc_download_prefix: str) -> tuple[str, int, int]: +def read_cdx_line(line: str, warc_download_prefix: str) -> Tuple[str, int, int]: cols = line.split(' ', maxsplit=2) if len(cols) == 3: @@ -67,7 +67,7 @@ def read_cdx_line(line: str, warc_download_prefix: str) -> tuple[str, int, int]: return (warc_url, offset, length) -def read_cdx_index_from_s3(s3_path: str, warc_download_prefix: str) -> Iterable[tuple[str, int, int]]: +def read_cdx_index_from_s3(s3_path: str, warc_download_prefix: str) -> Iterable[Tuple[str, int, int]]: """ Read CDX records from a gzipped S3 file. """ From 72c3201260fe3928fa8a1bab4cda203aa3f6600e Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 17 Sep 2025 11:12:39 +0000 Subject: [PATCH 22/23] fixed types and fail fast --- cdx_toolkit/warcer_by_cdx/aioboto3_utils.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py index adbfd05..16851ea 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py @@ -2,7 +2,7 @@ import logging import time from dataclasses import dataclass -from typing import Dict, List, Optional +from typing import Dict, List, Optional, Tuple from os import urandom from botocore.exceptions import ClientError, EndpointConnectionError @@ -69,7 +69,7 @@ def _backoff(attempt: int, base_backoff_seconds: float) -> float: return max(0.05, base * (0.8 + 0.4 * urandom(1)[0] / 255)) -def parse_s3_uri(uri: str) -> tuple[str, str]: +def parse_s3_uri(uri: str) -> Tuple[str, str]: if not uri.startswith('s3://'): raise ValueError(f'Not an S3 URI: {uri}') rest = uri[5:] From d9adf0352abf42d3f3cbcfcd4f44e8c813ed3aa5 Mon Sep 17 00:00:00 2001 From: malteos Date: Wed, 17 Sep 2025 15:07:03 +0000 Subject: [PATCH 23/23] adding max file size to aioboto3 implementation; improving test coverage --- cdx_toolkit/warcer_by_cdx/__init__.py | 17 +- cdx_toolkit/warcer_by_cdx/aioboto3_utils.py | 13 +- cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py | 200 ++++++++++++++---- cdx_toolkit/warcer_by_cdx/args.py | 11 +- cdx_toolkit/warcer_by_cdx/cdx_utils.py | 10 +- cdx_toolkit/warcer_by_cdx/fsspec_warcer.py | 33 ++- cdx_toolkit/warcer_by_cdx/warc_utils.py | 78 +++++++ tests/conftest.py | 3 + ...ed_CC-MAIN-2024-30_cdx-00187.metadata.json | 4 + tests/warc_by_cdx/test_cdx_utils.py | 28 +++ tests/warc_by_cdx/test_filter_cdx.py | 5 +- tests/warc_by_cdx/test_warc_by_cdx.py | 52 ++++- .../warc_by_cdx/test_warc_by_cdx_aioboto3.py | 146 ++++++++++++- tests/warc_by_cdx/test_warc_utils.py | 31 +++ 14 files changed, 532 insertions(+), 99 deletions(-) create mode 100644 cdx_toolkit/warcer_by_cdx/warc_utils.py create mode 100644 tests/data/warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.metadata.json create mode 100644 tests/warc_by_cdx/test_cdx_utils.py create mode 100644 tests/warc_by_cdx/test_warc_utils.py diff --git a/cdx_toolkit/warcer_by_cdx/__init__.py b/cdx_toolkit/warcer_by_cdx/__init__.py index ca6f36b..d12ac45 100644 --- a/cdx_toolkit/warcer_by_cdx/__init__.py +++ b/cdx_toolkit/warcer_by_cdx/__init__.py @@ -36,7 +36,16 @@ def run_warcer_by_cdx(args, cmdline): implementation: ImplementationType = args.implementation - write_index_as_record = args.write_index_as_record + write_paths_as_resource_records = args.write_paths_as_resource_records + write_paths_as_resource_records_metadata = args.write_paths_as_resource_records_metadata + + if write_paths_as_resource_records and write_paths_as_resource_records_metadata: + if len(write_paths_as_resource_records) != len(write_paths_as_resource_records_metadata): + raise ValueError("Number of paths to resource records must be equal to metadata paths.") + + if not write_paths_as_resource_records and write_paths_as_resource_records_metadata: + raise ValueError("Metadata paths are set but resource records paths are missing.") + ispartof = args.prefix if args.subprefix: ispartof += '-' + args.subprefix @@ -77,7 +86,8 @@ def run_warcer_by_cdx(args, cmdline): prefix_path=prefix_path, writer_info=info, writer_subprefix=args.subprefix, - write_index_as_record=write_index_as_record, + write_paths_as_resource_records=write_paths_as_resource_records, + write_paths_as_resource_records_metadata=write_paths_as_resource_records_metadata, limit=limit, log_every_n=log_every_n, warc_download_prefix=cdx.warc_download_prefix, @@ -90,7 +100,8 @@ def run_warcer_by_cdx(args, cmdline): prefix_path=prefix_path, writer_info=info, writer_subprefix=args.subprefix, - write_index_as_record=write_index_as_record, + write_paths_as_resource_records=write_paths_as_resource_records, + write_paths_as_resource_records_metadata=write_paths_as_resource_records_metadata, limit=limit, log_every_n=log_every_n, warc_download_prefix=cdx.warc_download_prefix, diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py index 16851ea..1ea64e8 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_utils.py @@ -29,21 +29,14 @@ def add_bytes(self, bytes_count: int): def get_stats(self) -> dict: elapsed = time.time() - self.start_time - if elapsed <= 0: - return { - 'elapsed': 0, - 'bytes_per_sec': 0, - 'mb_per_sec': 0, - 'requests_per_sec': 0, - } return { 'elapsed': elapsed, 'total_bytes': self.total_bytes, 'total_requests': self.total_requests, - 'bytes_per_sec': self.total_bytes / elapsed, - 'mb_per_sec': (self.total_bytes / elapsed) / (1024 * 1024), - 'requests_per_sec': self.total_requests / elapsed, + 'bytes_per_sec': self.total_bytes / elapsed if elapsed > 0 else 0, + 'mb_per_sec': (self.total_bytes / elapsed) / (1024 * 1024) if elapsed > 0 else 0, + 'requests_per_sec': self.total_requests / elapsed if elapsed > 0 else 0, } diff --git a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py index f19e44d..511e3e6 100644 --- a/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/aioboto3_warcer.py @@ -17,8 +17,9 @@ ) from cdx_toolkit.warcer_by_cdx.aioboto3_writer import ShardWriter from cdx_toolkit.warcer_by_cdx.cdx_utils import ( - read_cdx_index_from_s3, + iter_cdx_index_from_path, ) +from cdx_toolkit.warcer_by_cdx.warc_utils import get_bytes_from_warc_record, get_resource_record_from_path logger = logging.getLogger(__name__) @@ -29,7 +30,8 @@ def filter_warc_by_cdx_via_aioboto3( prefix_path: str, writer_info: Dict, writer_subprefix: Optional[str] = None, - write_index_as_record: bool = False, + write_paths_as_resource_records: Optional[List[str]] = None, + write_paths_as_resource_records_metadata: Optional[List[str]] = None, limit: int = 0, log_every_n: int = 1000, warc_download_prefix: Optional[str] = None, @@ -43,7 +45,8 @@ def filter_warc_by_cdx_via_aioboto3( prefix_path=prefix_path, writer_info=writer_info, writer_subprefix=writer_subprefix, - write_index_as_record=write_index_as_record, + write_paths_as_resource_records=write_paths_as_resource_records, + write_paths_as_resource_records_metadata=write_paths_as_resource_records_metadata, limit=limit, log_every_n=log_every_n, warc_download_prefix=warc_download_prefix, @@ -62,7 +65,8 @@ async def filter_warc_by_cdx_via_aioboto3_async( prefix_path: str, writer_info: Dict, writer_subprefix: Optional[str] = None, - write_index_as_record: bool = False, + write_paths_as_resource_records: Optional[List[str]] = None, + write_paths_as_resource_records_metadata: Optional[List[str]] = None, limit: int = 0, log_every_n: int = 1000, warc_download_prefix: Optional[str] = None, @@ -72,6 +76,7 @@ async def filter_warc_by_cdx_via_aioboto3_async( key_queue_size: int = 1000, item_queue_size: int = 200, base_backoff_seconds=0.5, + s3_region_name: str = 'us-east-1', ) -> int: n_records = 0 fetcher_to_consumer_ratio = 6 @@ -82,22 +87,19 @@ async def filter_warc_by_cdx_via_aioboto3_async( item_queue: asyncio.Queue = asyncio.Queue(maxsize=item_queue_size) boto_cfg = Config( - region_name='us-east-1', + region_name=s3_region_name, retries={'max_attempts': max(2, max_attempts), 'mode': 'standard'}, connect_timeout=10, read_timeout=120, ) - if write_index_as_record: - raise NotImplementedError - session = aioboto3.Session() async with session.client('s3', config=boto_cfg) as s3: # Fetch file paths and ranges (offset, length) from index files logger.info('Starting lister, %d fetchers, %d consumers', num_fetchers, num_consumers) lister_task = asyncio.create_task( - lister_from_index( + get_range_jobs_from_index_paths( key_queue=key_queue, index_paths=index_paths, warc_download_prefix=warc_download_prefix, @@ -109,7 +111,7 @@ async def filter_warc_by_cdx_via_aioboto3_async( # Read WARC records based on file paths and ranges fetchers = [ asyncio.create_task( - fetcher( + fetch_warc_ranges( fetcher_id=i, key_queue=key_queue, item_queue=item_queue, @@ -125,14 +127,15 @@ async def filter_warc_by_cdx_via_aioboto3_async( # Write WARC records consumers = [ asyncio.create_task( - consumer( + write_warc( consumer_id=i, item_queue=item_queue, s3=s3, prefix_path=prefix_path, max_attempts=max_attempts, base_backoff_seconds=base_backoff_seconds, - write_index_as_record=write_index_as_record, + write_paths_as_resource_records=write_paths_as_resource_records, + write_paths_as_resource_records_metadata=write_paths_as_resource_records_metadata, writer_info=writer_info, writer_subprefix=writer_subprefix, writer_kwargs=writer_kwargs, @@ -161,14 +164,14 @@ async def filter_warc_by_cdx_via_aioboto3_async( return n_records -async def lister_from_index( +async def get_range_jobs_from_index_paths( key_queue: asyncio.Queue, index_paths: List[str], warc_download_prefix: str, num_fetchers: int, limit: int = 0, ): - """Stage 1: stream the index, parse lines -> RangeJob -> key_queue.""" + """Stage 1: stream the CDX paths, parse lines -> RangeJob (WARC files and offets) -> key_queue.""" logger.info('Range index limit: %i', limit) count = 0 @@ -181,7 +184,7 @@ async def lister_from_index( for index_path in index_paths: # Fetch range queries from index try: - for warc_url, offset, length in read_cdx_index_from_s3( + for warc_url, offset, length in iter_cdx_index_from_path( index_path, warc_download_prefix=warc_download_prefix ): # Convert the CDX record back to a RangeJob @@ -208,7 +211,7 @@ async def lister_from_index( logger.info('Lister enqueued %d jobs from %s', count, index_path) -async def fetcher( +async def fetch_warc_ranges( fetcher_id: int, key_queue: asyncio.Queue, item_queue: asyncio.Queue, @@ -276,58 +279,139 @@ async def fetcher( key_queue.task_done() -async def consumer( +def generate_warc_filename( + dest_prefix: str, consumer_id: int, - item_queue: asyncio.Queue, - s3, - max_attempts: int, - base_backoff_seconds: float, - prefix_path: str, - writer_info: Dict, + sequence: int, writer_subprefix: Optional[str] = None, - write_index_as_record: bool = False, - writer_kwargs: Optional[Dict] = None, - warc_version: str = '1.0', - log_every_n: int = 1000, gzip: bool = False, -): - """Stage 3: each consumer owns ONE shard MPU and appends ranges to it.""" - - dest_bucket, dest_prefix = parse_s3_uri(prefix_path) - - min_part_size = 5 * 1024 * 1024 # 5 MiB - content_type = None - +) -> str: file_name = dest_prefix + '-' if writer_subprefix is not None: file_name += writer_subprefix + '-' - file_name += '{:06d}'.format(consumer_id) + '.extracted.warc' - + file_name += '{:06d}-{:03d}'.format(consumer_id, sequence) + '.extracted.warc' if gzip: file_name += '.gz' - writer = ShardWriter( - file_name, + return file_name + + +async def create_new_writer_with_header( + s3, + consumer_id: int, + sequence: int, + dest_bucket: str, + dest_prefix: str, + max_attempts: int, + base_backoff_seconds: float, + min_part_size: int, + writer_info: Dict, + warc_version: str = '1.0', + writer_subprefix: Optional[str] = None, + gzip: bool = False, + content_type: Optional[str] = None, +): + filename = generate_warc_filename( + dest_prefix=dest_prefix, + consumer_id=consumer_id, + sequence=sequence, + writer_subprefix=writer_subprefix, + gzip=gzip, + ) + + new_writer = ShardWriter( + filename, dest_bucket, content_type, min_part_size, max_attempts, base_backoff_seconds, ) - tracker = ThroughputTracker() - tracker.start() - counter = 0 # Initialize writer - await writer.start(s3) + await new_writer.start(s3) # Write WARC header buffer = BytesIO() warc_writer = WARCWriter(buffer, gzip=gzip, warc_version=warc_version) - warcinfo = warc_writer.create_warcinfo_record(file_name, writer_info) + warcinfo = warc_writer.create_warcinfo_record(filename, writer_info) warc_writer.write_record(warcinfo) + header_data = buffer.getvalue() + await new_writer.write(s3, header_data) - await writer.write(s3, buffer.getvalue()) + return new_writer, len(header_data) + + +async def write_warc( + consumer_id: int, + item_queue: asyncio.Queue, + s3, + max_attempts: int, + base_backoff_seconds: float, + prefix_path: str, + writer_info: Dict, + writer_subprefix: Optional[str] = None, + write_paths_as_resource_records: Optional[List[str]] = None, + write_paths_as_resource_records_metadata: Optional[List[str]] = None, + writer_kwargs: Optional[Dict] = None, + warc_version: str = '1.0', + log_every_n: int = 1000, + gzip: bool = False, + content_type=None, + min_part_size: int = 5 * 1024 * 1024, # 5 MiB (for upload) + max_file_size: Optional[int] = 1 * 1024 * 1024 * 1024, # 1 GiB (for WARC outputs) +): + """Stage 3: Write WARC. Each consumer owns ONE shard MPU and appends ranges to it.""" + + dest_bucket, dest_prefix = parse_s3_uri(prefix_path) + + # File rotation tracking + current_file_sequence = 1 + current_file_size = 0 + + # Initialize first writer with header + writer, header_size = await create_new_writer_with_header( + s3, + consumer_id=consumer_id, + sequence=current_file_sequence, + dest_bucket=dest_bucket, + dest_prefix=dest_prefix, + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + writer_info=writer_info, + warc_version=warc_version, + writer_subprefix=writer_subprefix, + gzip=gzip, + content_type=content_type, + min_part_size=min_part_size, + ) + current_file_size = header_size + + tracker = ThroughputTracker() + tracker.start() + counter = 0 + + # Write WARC resource records + if write_paths_as_resource_records: + logger.info(f'Writing {len(write_paths_as_resource_records)} resource records to WARC ... ') + + # Resource records are written at the beginning the WARC file. + for i, resource_record_path in enumerate(write_paths_as_resource_records): + logger.info(f'Writing resource record from {resource_record_path} ...') + resource_record = get_resource_record_from_path( + file_path=resource_record_path, + metadata_path=( + write_paths_as_resource_records_metadata[i] if write_paths_as_resource_records_metadata else None + ), + ) + record_data = get_bytes_from_warc_record(resource_record, warc_version=warc_version, gzip=gzip) + + await writer.write(s3, record_data) + + # Keep track but do not rotate resource records + current_file_size += len(record_data) + + logger.info(f'Resource records added: {len(write_paths_as_resource_records)}') try: while True: @@ -348,7 +432,33 @@ async def consumer( else: should_stop = False assert isinstance(item, RangePayload) + + # Check if we need to rotate files due to size limit + if max_file_size and current_file_size + len(item.data) > max_file_size: + await writer.close(s3) + current_file_sequence += 1 + + writer, header_size = await create_new_writer_with_header( + s3, + consumer_id=consumer_id, + sequence=current_file_sequence, + dest_bucket=dest_bucket, + dest_prefix=dest_prefix, + max_attempts=max_attempts, + base_backoff_seconds=base_backoff_seconds, + writer_info=writer_info, + warc_version=warc_version, + writer_subprefix=writer_subprefix, + gzip=gzip, + content_type=content_type, + min_part_size=min_part_size, + ) + + current_file_size = header_size + logger.info(f'Rotated to new WARC file sequence {current_file_sequence} due to size limit') + await writer.write(s3, item.data) + current_file_size += len(item.data) tracker.add_bytes(len(item.data)) # Log progress every 10 items diff --git a/cdx_toolkit/warcer_by_cdx/args.py b/cdx_toolkit/warcer_by_cdx/args.py index 3555ad7..c54496d 100644 --- a/cdx_toolkit/warcer_by_cdx/args.py +++ b/cdx_toolkit/warcer_by_cdx/args.py @@ -38,9 +38,14 @@ def add_warcer_by_cdx_args(parser: argparse.ArgumentParser): help='prefix for downloading content, automatically set for CC', ) parser.add_argument( - '--write-index-as-record', - action='store_true', - help='If enable, the CDX index is written as resource record to the WARC file', + '--write-paths-as-resource-records', # --write-index-as-record + nargs="*", + help='Paths to multiple files. File content is written to as a resource record to each the WARC file', + ) + parser.add_argument( + '--write-paths-as-resource-records-metadata', + nargs="*", + help='Paths to multiple metadata files (JSON) for resource records from `--write-paths-as-resource-records`', ) parser.add_argument( '--parallel', diff --git a/cdx_toolkit/warcer_by_cdx/cdx_utils.py b/cdx_toolkit/warcer_by_cdx/cdx_utils.py index 4611478..0f2bc30 100644 --- a/cdx_toolkit/warcer_by_cdx/cdx_utils.py +++ b/cdx_toolkit/warcer_by_cdx/cdx_utils.py @@ -67,16 +67,16 @@ def read_cdx_line(line: str, warc_download_prefix: str) -> Tuple[str, int, int]: return (warc_url, offset, length) -def read_cdx_index_from_s3(s3_path: str, warc_download_prefix: str) -> Iterable[Tuple[str, int, int]]: +def iter_cdx_index_from_path(index_path: str, warc_download_prefix: str) -> Iterable[Tuple[str, int, int]]: """ - Read CDX records from a gzipped S3 file. + Iterate CDX records from a file path (gzipped; local or remote). """ # if not s3_path.startswith("s3://"): # raise ValueError(f"Invalid S3 path: {s3_path}") - logger.info('Reading CDX from %s', s3_path) + logger.info('Reading CDX from %s', index_path) - with fsspec.open(s3_path, 'rt', compression='gzip' if s3_path.endswith('.gz') else None) as f: + with fsspec.open(index_path, 'rt', compression='gzip' if index_path.endswith('.gz') else None) as f: for line in f: try: yield read_cdx_line(line, warc_download_prefix) @@ -85,4 +85,4 @@ def read_cdx_index_from_s3(s3_path: str, warc_download_prefix: str) -> Iterable[ logger.error('Invalid CDX line: %s', line) continue - logger.info(f'CDX completed from {s3_path}') + logger.info(f'CDX completed from {index_path}') diff --git a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py index f170279..7e0fefe 100644 --- a/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py +++ b/cdx_toolkit/warcer_by_cdx/fsspec_warcer.py @@ -7,7 +7,8 @@ from warcio.recordloader import ArcWarcRecord -from cdx_toolkit.warcer_by_cdx.cdx_utils import get_index_as_string_from_path, get_index_record +from cdx_toolkit.warcer_by_cdx.cdx_utils import get_index_as_string_from_path +from cdx_toolkit.warcer_by_cdx.warc_utils import get_resource_record_from_path logger = logging.getLogger(__name__) @@ -18,7 +19,8 @@ def filter_warc_by_cdx_via_fsspec( prefix_path: str, writer_info: Dict, writer_subprefix: Optional[str] = None, - write_index_as_record: bool = False, + write_paths_as_resource_records: Optional[List[str]] = None, + write_paths_as_resource_records_metadata: Optional[List[str]] = None, limit: int = 0, log_every_n: int = 1000, warc_download_prefix: Optional[str] = None, @@ -35,7 +37,7 @@ def filter_warc_by_cdx_via_fsspec( # Iterate over index files records_n = 0 for index_path in index_paths: - logger.info('filtering based on CDX from %s', index_path) + logger.info('Filtering WARC based on CDX from %s', index_path) # Read index completely (for the WARC resource record) index = get_index_as_string_from_path(index_path) @@ -44,13 +46,24 @@ def filter_warc_by_cdx_via_fsspec( # skip empty indicies continue - # Write index as record to WARC - # TODO at what position should the resource records be written? - if write_index_as_record: - logger.info('Writing CDX as resource record to WARC ... ') - writer.write_record(get_index_record(index, index_path)) - - logger.info('CDX resource recorded added') + # Write file content from paths as resource records to WARC + if write_paths_as_resource_records: + logger.info('Writing resource records to WARC ... ') + + # Resource records are written at the beginning the WARC file. + for i, resource_record_path in enumerate(write_paths_as_resource_records): + logger.info(f'Writing resource record from {resource_record_path} ...') + resource_record = get_resource_record_from_path( + file_path=resource_record_path, + metadata_path=( + write_paths_as_resource_records_metadata[i] + if write_paths_as_resource_records_metadata + else None + ), + ) + writer.write_record(resource_record) + + logger.info(f'Resource records added: {len(write_paths_as_resource_records)}') # The index file holds all the information to download specific objects (file, offset, length etc.) index_lines = index.splitlines() diff --git a/cdx_toolkit/warcer_by_cdx/warc_utils.py b/cdx_toolkit/warcer_by_cdx/warc_utils.py new file mode 100644 index 0000000..0eb5b71 --- /dev/null +++ b/cdx_toolkit/warcer_by_cdx/warc_utils.py @@ -0,0 +1,78 @@ +from io import BytesIO +import json +from pathlib import Path +import fsspec +from warcio.recordloader import ArcWarcRecord +from warcio import WARCWriter + +from typing import Optional, Union + +import mimetypes + +def get_bytes_from_warc_record( + record, + warc_version: str = '1.0', + gzip: bool = False, + ): + buffer = BytesIO() + warc_writer = WARCWriter(buffer, gzip=gzip, warc_version=warc_version) + warc_writer.write_record(record) + + return buffer.getvalue() + +def get_resource_record_from_path( + file_path: Union[str, Path], + metadata_path: Optional[Union[str, Path]] = None, + ) -> ArcWarcRecord: + """Build WARC resource record for file path and metdata path. + + The metadata file must be a valid JSON and can have the following fields: + - warc_content_type + - uri + - http_headers + - warc_headers_dict + + If uri is not provided as metadata, the file_path is used. + If warc_content_type is not provided as metadata, the type is guessed. + """ + # Cast to string + file_path = str(file_path) + + with fsspec.open(file_path, "rb") as f: + file_bytes = BytesIO(f.read()) + + if metadata_path: + # Load metadata from path + metadata_path = str(metadata_path) + + if not metadata_path.endswith(".json"): + raise ValueError("Metadata must be provided JSON (file path ends with *.json)") + + with fsspec.open(metadata_path) as f: + metadata = json.load(f) + + warc_content_type = metadata.get("warc_content_type", None) + uri = metadata.get("uri", None) + http_headers = metadata.get("http_headers", None) + warc_headers_dict = metadata.get("warc_headers_dict", None) + else: + # Without metdata + warc_content_type = None + uri = None + http_headers = None + warc_headers_dict = None + + if warc_content_type is None: + warc_content_type = mimetypes.guess_type(file_path)[0] + + if uri is None: + uri = file_path + + return WARCWriter(None).create_warc_record( + uri=uri, + record_type='resource', + payload=file_bytes, + http_headers=http_headers, + warc_content_type=warc_content_type, + warc_headers_dict=warc_headers_dict, + ) \ No newline at end of file diff --git a/tests/conftest.py b/tests/conftest.py index 7a5dbd4..b662111 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,7 +1,10 @@ +from pathlib import Path import pytest import boto3 from botocore.exceptions import NoCredentialsError, ClientError +TEST_DATA_PATH = Path(__file__).parent / "data" + def check_aws_s3_access(): """Check if AWS S3 access is available.""" diff --git a/tests/data/warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.metadata.json b/tests/data/warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.metadata.json new file mode 100644 index 0000000..6a4103f --- /dev/null +++ b/tests/data/warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.metadata.json @@ -0,0 +1,4 @@ +{ + "uri": "filter_cdx.cdx.gz", + "warc_content_type": "application/cdx" +} \ No newline at end of file diff --git a/tests/warc_by_cdx/test_cdx_utils.py b/tests/warc_by_cdx/test_cdx_utils.py new file mode 100644 index 0000000..414a867 --- /dev/null +++ b/tests/warc_by_cdx/test_cdx_utils.py @@ -0,0 +1,28 @@ +import fsspec +import pytest +from cdx_toolkit.warcer_by_cdx.cdx_utils import get_index_as_string_from_path, read_cdx_line +from tests.conftest import TEST_DATA_PATH + + +def test_get_index_as_string_from_path(): + cdx_path = TEST_DATA_PATH / "warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.gz" + + index = get_index_as_string_from_path(cdx_path) + + assert len(index) == 568010 + + +def test_get_index_as_string_from_path_with_fs(): + fs, cdx_path = fsspec.url_to_fs(TEST_DATA_PATH / "warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.gz") + + index = get_index_as_string_from_path(cdx_path, fs) + + assert len(index) == 568010 + +get_index_as_string_from_path + +def test_read_cdx_line_error(): + with pytest.raises(ValueError) as ec_info: + read_cdx_line("this_is_a_bad_CDX-line", warc_download_prefix="http://") + + assert ec_info.match("Cannot parse line") \ No newline at end of file diff --git a/tests/warc_by_cdx/test_filter_cdx.py b/tests/warc_by_cdx/test_filter_cdx.py index 988f523..8eb8980 100644 --- a/tests/warc_by_cdx/test_filter_cdx.py +++ b/tests/warc_by_cdx/test_filter_cdx.py @@ -1,11 +1,10 @@ import pytest -from pathlib import Path from cdx_toolkit.cli import main from cdx_toolkit.filter_cdx import resolve_paths, validate_resolved_paths -from tests.conftest import requires_aws_s3 +from tests.conftest import requires_aws_s3, TEST_DATA_PATH -fixture_path = Path(__file__).parent.parent / 'data/filter_cdx' +fixture_path = TEST_DATA_PATH / 'filter_cdx' @requires_aws_s3 diff --git a/tests/warc_by_cdx/test_warc_by_cdx.py b/tests/warc_by_cdx/test_warc_by_cdx.py index fc80ae2..b9b1724 100644 --- a/tests/warc_by_cdx/test_warc_by_cdx.py +++ b/tests/warc_by_cdx/test_warc_by_cdx.py @@ -1,5 +1,4 @@ import os -from pathlib import Path from typing import List, Optional import fsspec @@ -13,15 +12,16 @@ import pytest from warcio.archiveiterator import ArchiveIterator -from tests.conftest import requires_aws_s3 +from tests.conftest import requires_aws_s3, TEST_DATA_PATH -fixture_path = Path(__file__).parent.parent / 'data/warc_by_cdx' +fixture_path = TEST_DATA_PATH / 'warc_by_cdx' def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: Optional[List[str]] = None): # test cli and check output index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' + resource_record_path = TEST_DATA_PATH / 'filter_cdx/whitelist_10_urls.txt' if extra_args is None: extra_args = [] @@ -32,8 +32,9 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args '--cc', '--limit=10', 'warc_by_cdx', - f'{str(index_path)}', - '--write-index-as-record', + str(index_path), + '--write-paths-as-resource-records', + str(resource_record_path), f'--prefix={str(base_prefix)}/TEST_warc_by_index', '--creator=foo', '--operator=bob', @@ -48,10 +49,13 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args # Validate extracted WARC warc_filename = 'TEST_warc_by_index-000000.extracted.warc.gz' warc_path = str(base_prefix) + '/' + warc_filename - resource_record = None + info_record = None response_records = [] + resource_record = None + resource_record_content = None + with fsspec.open(warc_path, 'rb') as stream: for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': @@ -62,13 +66,17 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args if record.rec_type == 'resource': resource_record = record + resource_record_content = record.content_stream().read().decode('utf-8') assert len(response_records) == 10 + assert resource_record is not None - assert resource_record.length == 568010 + assert resource_record.length == 294, 'Invalid resource record' + assert resource_record_content[:10] == 'example.co', 'Invalid resource record' + assert resource_record_content[-20:-1] == 'hr.fr/produit/t-837', 'Invalid resource record' - assert info_record is not None - assert 'operator: bob' in info_record + assert info_record is not None, 'Invalid info record' + assert 'operator: bob' in info_record, 'Invalid info record' def test_cli_warc_by_cdx_over_http(tmpdir, caplog): @@ -216,3 +224,29 @@ def test_warc_by_cdx_without_creator_operator(tmpdir): assert info_record is not None assert 'creator:' not in info_record assert 'operator:' not in info_record + + +def test_resource_records_paths_mismatch(): + # Test if mismatch of number of paths for resource records and their metdata is raised. + with pytest.raises(ValueError) as exc_info: + main( + args=[ + '-v', + '--cc', + 'warc_by_cdx', + 'foo/bar', + '--write-paths-as-resource-records', + 'resource1', + 'resource2', + '--write-paths-as-resource-records-metadata', + 'metadata2', + ] + ) + assert exc_info.match('Number of paths to resource records') + + +def test_metadata_paths_without_resource_records_paths(): + # Test if error of missing resource records paths is raised. + with pytest.raises(ValueError) as exc_info: + main(args=['-v', '--cc', 'warc_by_cdx', 'foo/bar', '--write-paths-as-resource-records-metadata', 'metadata2']) + assert exc_info.match('Metadata paths are set but') diff --git a/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py b/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py index 10dd118..5cceead 100644 --- a/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py +++ b/tests/warc_by_cdx/test_warc_by_cdx_aioboto3.py @@ -1,26 +1,29 @@ +import asyncio from io import BytesIO -from pathlib import Path from typing import List, Optional +import aioboto3 import fsspec from cdx_toolkit.cli import main from warcio.archiveiterator import ArchiveIterator -from tests.conftest import requires_aws_s3 +from tests.conftest import requires_aws_s3, TEST_DATA_PATH from warcio import WARCWriter +from cdx_toolkit.warcer_by_cdx.aioboto3_warcer import get_range_jobs_from_index_paths, write_warc +from cdx_toolkit.warcer_by_cdx.aioboto3_utils import RangePayload, _STOP -fixture_path = Path(__file__).parent.parent / 'data/warc_by_cdx' +fixture_path = TEST_DATA_PATH / 'warc_by_cdx' def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args: Optional[List[str]] = None): # test cli and check output index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' + resource_record_path = TEST_DATA_PATH / 'filter_cdx/whitelist_10_urls.txt' + if extra_args is None: extra_args = [] - # --write-index-as-record - main( args=[ '-v', @@ -28,6 +31,8 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args '--limit=10', 'warc_by_cdx', str(index_path), + '--write-paths-as-resource-records', + str(resource_record_path), f'--prefix={str(base_prefix)}/TEST_warc_by_index', '--creator=foo', '--operator=bob', @@ -40,13 +45,16 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args assert 'Limit reached' in caplog.text # Validate extracted WARC - warc_filename = 'TEST_warc_by_index-000000.extracted.warc.gz' + warc_filename = 'TEST_warc_by_index-000000-001.extracted.warc.gz' warc_path = str(base_prefix) + '/' + warc_filename - resource_record = None + info_record = None response_records = [] response_contents = [] + resource_record = None + resource_record_content = None + with fsspec.open(warc_path, 'rb') as stream: for record in ArchiveIterator(stream): if record.rec_type == 'warcinfo': @@ -56,8 +64,9 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args response_records.append(record) response_contents.append(record.content_stream().read().decode('utf-8', errors='ignore')) - # if record.rec_type == 'resource': - # resource_record = record + if record.rec_type == 'resource': + resource_record = record + resource_record_content = record.content_stream().read().decode('utf-8') assert len(response_records) == 10, 'Invalid record count' # assert resource_record is not None @@ -65,8 +74,14 @@ def assert_cli_warc_by_cdx(warc_download_prefix, base_prefix, caplog, extra_args assert 'Catalogue en ligne Mission de France' in response_contents[0], 'Invalid response content' assert 'dojo/dijit/themes/tundra/tundra' in response_contents[9], 'Invalid response content' - assert info_record is not None - assert 'operator: bob' in info_record, 'Invalid WARC info' + + assert info_record is not None, 'Invalid info record' + assert 'operator: bob' in info_record, 'Invalid info record' + + assert resource_record is not None + assert resource_record.length == 294, 'Invalid resource record' + assert resource_record_content[:10] == 'example.co', 'Invalid resource record' + assert resource_record_content[-20:-1] == 'hr.fr/produit/t-837', 'Invalid resource record' @requires_aws_s3 @@ -103,3 +118,112 @@ def test_warc_info(): file_value = file_handler.getvalue().decode('utf-8') assert 'pypi_cdx_toolkit/123' in file_value + + +@requires_aws_s3 +def test_write_warc_with_file_rotation(tmpdir): + """Test write_warc function with file size rotation""" + + async def run_test(): + # Setup test data + index_path = fixture_path / 'filtered_CC-MAIN-2024-30_cdx-00187.gz' + warc_download_prefix = 's3://commoncrawl' + prefix_path = f's3://commoncrawl-dev/cdx_toolkit/ci/test-outputs{tmpdir}/file_rotation_test' + + # Use small file size to force rotation (100 KB) + max_file_size = 100 * 1024 # 100 KB + + # Create asyncio queues + key_queue = asyncio.Queue() + item_queue = asyncio.Queue() + + # Writer info for WARC header + writer_info = { + 'software': 'cdx_toolkit test', + 'operator': 'test', + 'creator': 'test', + 'description': 'Test WARC with file rotation', + } + + # Setup S3 client + from botocore.config import Config + + boto_cfg = Config( + region_name='us-east-1', + retries={'max_attempts': 3, 'mode': 'standard'}, + connect_timeout=10, + read_timeout=120, + ) + + session = aioboto3.Session() + + async with session.client('s3', config=boto_cfg) as s3: + # Generate range jobs from CDX file + await get_range_jobs_from_index_paths( + key_queue=key_queue, + index_paths=[str(index_path)], + warc_download_prefix=warc_download_prefix, + num_fetchers=1, + limit=10, # Use 10 records to ensure we have enough data + ) + + # Collect all range jobs + range_jobs = [] + while not key_queue.empty(): + job = await key_queue.get() + if job is not _STOP: + range_jobs.append(job) + key_queue.task_done() + + # Create mock RangePayload objects with dummy data to simulate large content + # Each payload will be ~30KB to force multiple file rotations + dummy_data = b'A' * (30 * 1024) # 30KB of dummy data + + for job in range_jobs: + payload = RangePayload(job=job, data=dummy_data) + await item_queue.put(payload) + + # Add stop signal + await item_queue.put(_STOP) + + # Run write_warc function + await write_warc( + consumer_id=0, + item_queue=item_queue, + s3=s3, + max_attempts=3, + base_backoff_seconds=0.5, + prefix_path=prefix_path, + writer_info=writer_info, + max_file_size=max_file_size, + gzip=True, + ) + + # Verify that multiple WARC files were created + dest_bucket = 'commoncrawl-dev' + dest_prefix = f'cdx_toolkit/ci/test-outputs{tmpdir}/file_rotation_test' + + # List objects to find all created WARC files + response = await s3.list_objects_v2(Bucket=dest_bucket, Prefix=dest_prefix) + + warc_files = [] + if 'Contents' in response: + for obj in response['Contents']: + if obj['Key'].endswith('.extracted.warc.gz'): + warc_files.append(obj['Key']) + + # Assert that more than one WARC file was created + assert len(warc_files) == 4, f'Expected multiple WARC files, but found {len(warc_files)}: {warc_files}' + + # Verify filename pattern includes sequence numbers + for warc_file in warc_files: + filename = warc_file.split('/')[-1] + # Should match pattern: prefix-000000-XXX.extracted.warc.gz + assert '-000000-' in filename, f"Filename doesn't contain expected sequence pattern: {filename}" + + # Clean up created files + for warc_file in warc_files: + await s3.delete_object(Bucket=dest_bucket, Key=warc_file) + + # Run the async test + asyncio.run(run_test()) diff --git a/tests/warc_by_cdx/test_warc_utils.py b/tests/warc_by_cdx/test_warc_utils.py new file mode 100644 index 0000000..f95fbe5 --- /dev/null +++ b/tests/warc_by_cdx/test_warc_utils.py @@ -0,0 +1,31 @@ +import pytest +from cdx_toolkit.warcer_by_cdx.warc_utils import get_resource_record_from_path +from tests.conftest import TEST_DATA_PATH + + +def test_get_resource_record_from_path(): + resource_path = TEST_DATA_PATH / "filter_cdx/whitelist_10_urls.txt" + record = get_resource_record_from_path(resource_path) + + assert record.content_type == "text/plain" + + record_headers = dict(record.rec_headers.headers) + assert record_headers["WARC-Target-URI"] == str(resource_path) + + +def test_get_resource_record_from_path_with_metadata(): + resource_path = TEST_DATA_PATH / "warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.gz" + metadata_path = TEST_DATA_PATH / "warc_by_cdx/filtered_CC-MAIN-2024-30_cdx-00187.metadata.json" + + record = get_resource_record_from_path(resource_path, metadata_path) + + assert record.content_type == "application/cdx" + + record_headers = dict(record.rec_headers.headers) + assert record_headers["WARC-Target-URI"] == "filter_cdx.cdx.gz" + + +def test_get_resource_record_from_path_with_invalid_metadata_path(): + with pytest.raises(ValueError): + resource_path = TEST_DATA_PATH / "filter_cdx/whitelist_10_urls.txt" + get_resource_record_from_path(resource_path, "invalid_metadata.xy") \ No newline at end of file