rename package to a namespace that we control

Author: mr-c

README.md

@@ -1,6 +1,6 @@
 [![Coverage Status](https://coveralls.io/repos/github/common-workflow-language/cwljava/badge.svg?branch=cwl-1.2.0)](https://coveralls.io/github/common-workflow-language/cwljava?branch=cwl-1.2.0)
 
-# org.w3id.cwl.cwl1_2
+# org.commonwl.cwlsdk
 
 This project contains Java objects and utilities  auto-generated by <a href="https://github.com/common-workflow-language/schema_salad">Schema Salad</a> for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.
 

adding_new_cwl_versions.txt

@@ -6,7 +6,7 @@ git ls-files -- tests | grep cwl$ | xargs -I{} bash -c 'cwltool --relax-path-che
 mkdir valid-examples; for file in $(cat valid_examples.txt); do cp ${file} valid-examples/valid_$(basename ${file}) ; done
 
 # build the Java parser
-schema-salad-tool --codegen java --codegen-package org.w3id.cwl.cwl1_1 --codegen-examples ~/cwl-v1.1/valid-examples ~/cwl-v1.1/CommonWorkflowLanguage.yml
+schema-salad-tool --codegen java --codegen-package org.commonwl.cwlsdk.cwl1_1 --codegen-examples ~/cwl-v1.1/valid-examples ~/cwl-v1.1/CommonWorkflowLanguage.yml
 
 mvn test
-# copy missing files into ./src/test/resources/org/w3id/cwl/cwl1_1/utils
+# copy missing files into ./src/test/resources/org/commonwl/cwlsdk/cwl1_1/utils

pom.xml

@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
 <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
   <modelVersion>4.0.0</modelVersion>
-  <groupId>org.w3id.cwl.sdk</groupId>
-  <artifactId>cwljava</artifactId>
+  <groupId>org.commonwl</groupId>
+  <artifactId>cwlsdk</artifactId>
   <packaging>jar</packaging>
   <name>Common Workflow Language SDK</name>
   <description><![CDATA[This project contains Java objects and utilities  auto-generated by <a href="https://github.com/common-workflow-language/schema_salad">Schema Salad</a> for parsing documents corresponding to the https://w3id.org/cwl/cwl# schema.]]></description>
@@ -70,7 +70,7 @@
         <configuration>
           <archive>
             <manifest>
-              <mainClass>org.w3id.cwl.cwl1_2.utils.Validator</mainClass>
+              <mainClass>org.commonwl.cwlsdk.cwl1_2.utils.Validator</mainClass>
             </manifest>
           </archive>
           <descriptorRefs>

src/main/java/org/commonwl/cwlsdk/cwl1_1/Any.java

@@ -0,0 +1,37 @@
+// Copyright Common Workflow Language project contributors
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package org.commonwl.cwlsdk.cwl1_1;
+
+import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;
+
+public enum Any {
+  ANY("Any");
+
+  private static String[] symbols = new String[] {"Any"};
+  private String docVal;
+
+  private Any(final String docVal) {
+    this.docVal = docVal;
+  }
+
+  public static Any fromDocumentVal(final String docVal) {
+    for(final Any val : Any.values()) {
+      if(val.docVal.equals(docVal)) {
+        return val;
+      }
+    }
+    throw new ValidationException(String.format("Expected one of %s", Any.symbols, docVal));
+  }
+}

src/main/java/org/commonwl/cwlsdk/cwl1_1/ArraySchema.java

@@ -0,0 +1,42 @@
+// Copyright Common Workflow Language project contributors
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package org.commonwl.cwlsdk.cwl1_1;
+
+import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
+import org.commonwl.cwlsdk.cwl1_1.utils.Saveable;
+
+/**
+* Auto-generated interface for <I>https://w3id.org/cwl/salad#ArraySchema</I><BR>This interface is implemented by {@link ArraySchemaImpl}<BR>
+ */
+public interface ArraySchema extends Saveable {
+
+  java.util.Map<String, Object> getExtensionFields();
+  LoadingOptions getLoadingOptions();
+
+  /**
+   * Getter for property <I>https://w3id.org/cwl/salad#items</I><BR>
+   * <BLOCKQUOTE>
+   * Defines the type of the array elements.   * </BLOCKQUOTE>
+   */
+
+  Object getItems();
+  /**
+   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
+   * <BLOCKQUOTE>
+   * Must be `array`   * </BLOCKQUOTE>
+   */
+
+  Array_name getType();
+}

src/main/java/org/commonwl/cwlsdk/cwl1_1/ArraySchemaImpl.java

@@ -0,0 +1,128 @@
+// Copyright Common Workflow Language project contributors
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package org.commonwl.cwlsdk.cwl1_1;
+
+import org.commonwl.cwlsdk.cwl1_1.utils.LoaderInstances;
+import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
+import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptionsBuilder;
+import org.commonwl.cwlsdk.cwl1_1.utils.SaveableImpl;
+import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;
+
+/**
+* Auto-generated class implementation for <I>https://w3id.org/cwl/salad#ArraySchema</I><BR>
+ */
+public class ArraySchemaImpl extends SaveableImpl implements ArraySchema {
+  private LoadingOptions loadingOptions_ = new LoadingOptionsBuilder().build();
+  private java.util.Map<String, Object> extensionFields_ =
+      new java.util.HashMap<String, Object>();
+  public LoadingOptions getLoadingOptions() {
+    return this.loadingOptions_;
+  }
+  public java.util.Map<String, Object> getExtensionFields() {
+    return this.extensionFields_;
+  }
+
+  private Object items;
+
+  /**
+   * Getter for property <I>https://w3id.org/cwl/salad#items</I><BR>
+   * <BLOCKQUOTE>
+   * Defines the type of the array elements.   * </BLOCKQUOTE>
+   */
+
+  public Object getItems() {
+    return this.items;
+  }
+
+  private Array_name type;
+
+  /**
+   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
+   * <BLOCKQUOTE>
+   * Must be `array`   * </BLOCKQUOTE>
+   */
+
+  public Array_name getType() {
+    return this.type;
+  }
+
+  /**
+   * Used by {@link org.commonwl.cwlsdk.cwl1_1.utils.RootLoader} to construct instances of ArraySchemaImpl.
+   *
+   * @param __doc_            Document fragment to load this record object from (presumably a
+                              {@link java.util.Map}).
+   * @param __baseUri_        Base URI to generate child document IDs against.
+   * @param __loadingOptions  Context for loading URIs and populating objects.
+   * @param __docRoot_        ID at this position in the document (if available) (maybe?)
+   * @throws ValidationException If the document fragment is not a {@link java.util.Map}
+   *                             or validation of fields fails.
+   */
+  public ArraySchemaImpl(
+      final Object __doc_,
+      final String __baseUri_,
+      LoadingOptions __loadingOptions,
+      final String __docRoot_) {
+    super(__doc_, __baseUri_, __loadingOptions, __docRoot_);
+    // Prefix plumbing variables with '__' to reduce likelihood of collision with
+    // generated names.
+    String __baseUri = __baseUri_;
+    String __docRoot = __docRoot_;
+    if (!(__doc_ instanceof java.util.Map)) {
+      throw new ValidationException("ArraySchemaImpl called on non-map");
+    }
+    final java.util.Map<String, Object> __doc = (java.util.Map<String, Object>) __doc_;
+    final java.util.List<ValidationException> __errors =
+        new java.util.ArrayList<ValidationException>();
+    if (__loadingOptions != null) {
+      this.loadingOptions_ = __loadingOptions;
+    }
+    Object items;
+    try {
+      items =
+          LoaderInstances
+              .uri_union_of_PrimitiveType_or_RecordSchema_or_EnumSchema_or_ArraySchema_or_MapSchema_or_UnionSchema_or_StringInstance_or_array_of_union_of_PrimitiveType_or_RecordSchema_or_EnumSchema_or_ArraySchema_or_MapSchema_or_UnionSchema_or_StringInstance_False_True_2_None
+              .loadField(__doc.get("items"), __baseUri, __loadingOptions);
+    } catch (ValidationException e) {
+      items = null; // won't be used but prevents compiler from complaining.
+      final String __message = "the `items` field is not valid because:";
+      __errors.add(new ValidationException(__message, e));
+    }
+    Array_name type;
+    try {
+      type =
+          LoaderInstances
+              .typedsl_Array_name_2
+              .loadField(__doc.get("type"), __baseUri, __loadingOptions);
+    } catch (ValidationException e) {
+      type = null; // won't be used but prevents compiler from complaining.
+      final String __message = "the `type` field is not valid because:";
+      __errors.add(new ValidationException(__message, e));
+    }
+    if (!__errors.isEmpty()) {
+      throw new ValidationException("Trying 'RecordField'", __errors);
+    }
+    this.items = (Object) items;
+    this.type = (Array_name) type;
+    for (String field:__doc.keySet()) {
+      if (!attrs.contains(field)) {
+        if (field.contains(":")) {
+          String expanded_field = __loadingOptions.expandUrl(field, "", false, false, null);
+          extensionFields_.put(expanded_field, __doc.get(field));
+        }
+      }
+    }
+  }
+  private java.util.List<String> attrs = java.util.Arrays.asList("items", "type");
+}

src/main/java/org/commonwl/cwlsdk/cwl1_1/Array_name.java

@@ -0,0 +1,37 @@
+// Copyright Common Workflow Language project contributors
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package org.commonwl.cwlsdk.cwl1_1;
+
+import org.commonwl.cwlsdk.cwl1_1.utils.ValidationException;
+
+public enum Array_name {
+  ARRAY("array");
+
+  private static String[] symbols = new String[] {"array"};
+  private String docVal;
+
+  private Array_name(final String docVal) {
+    this.docVal = docVal;
+  }
+
+  public static Array_name fromDocumentVal(final String docVal) {
+    for(final Array_name val : Array_name.values()) {
+      if(val.docVal.equals(docVal)) {
+        return val;
+      }
+    }
+    throw new ValidationException(String.format("Expected one of %s", Array_name.symbols, docVal));
+  }
+}

src/main/java/org/commonwl/cwlsdk/cwl1_1/CWLArraySchema.java

@@ -0,0 +1,42 @@
+// Copyright Common Workflow Language project contributors
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+package org.commonwl.cwlsdk.cwl1_1;
+
+import org.commonwl.cwlsdk.cwl1_1.utils.LoadingOptions;
+import org.commonwl.cwlsdk.cwl1_1.utils.Saveable;
+
+/**
+* Auto-generated interface for <I>https://w3id.org/cwl/cwl#CWLArraySchema</I><BR>This interface is implemented by {@link CWLArraySchemaImpl}<BR>
+ */
+public interface CWLArraySchema extends ArraySchema, Saveable {
+
+  java.util.Map<String, Object> getExtensionFields();
+  LoadingOptions getLoadingOptions();
+
+  /**
+   * Getter for property <I>https://w3id.org/cwl/salad#items</I><BR>
+   * <BLOCKQUOTE>
+   * Defines the type of the array elements.   * </BLOCKQUOTE>
+   */
+
+  Object getItems();
+  /**
+   * Getter for property <I>https://w3id.org/cwl/salad#type</I><BR>
+   * <BLOCKQUOTE>
+   * Must be `array`   * </BLOCKQUOTE>
+   */
+
+  Array_name getType();
+}