Weird error with reportCellQC function

[yingzhang121]

Hi, I got the following error message when I tried to run function "reportCellQC":

> reportCellQC(cellSCE)


processing file: CellQC.Rmd
  |..........                                        |  19%                                  

  |..................................                |  69%                                  
  |.......................................           |  78% [DecontX-plot]                   
Quitting from lines 1024-1060 [DecontX-plot] (CellQC.Rmd)
Error in `as.character()`:
! cannot coerce type 'closure' to vector of type 'character'
Backtrace:
 1. singleCellTK (local) metaChecking(DecontXMeta, sample)

So I copied the CellQC.Rmd from this github repository, and ran the knitting with assigning the correct "params" for inSCE object. The code finished without a problem, and you can see it here:

https://zhan2142.s3.msi.umn.edu/Parse_Lee_s47053_QC.html

I don't know why the markdown file worked fine, while the wrapper function "reportCellQC" failed.

My running environment is provided in the "sessionInfo" in the linked html file.

[joshua-d-campbell]

Hi @yingzhang121, thanks for trying out our tool and posting this. We have not been able to see this error with our datasets. Would it be possible to share the dataset with us so we can look at the error on our end?