Compatibility with recent WarpLib

[biochem-fan]

Arguments of some functions in WarpLibs and gtom seem to have been updated.

• The first is GPU.LocalFilter. The current version does not take B factor.
• The other is Helper.ForEachGPUOnce and Helper.ForGPU. The MaxGPUs argument should be replaced with an list of GPUs like List<int> gpuList = Helper.ArrayOfSequence(0, MaxGPUs, 1).ToList();.

WarpLib/Headers/MRC.cs

HeaderMRC() reads Griddimensions but Write() writes Dimensions instead. This breaks NMAMap (AddSegmentation complains). See https://twitter.com/DTegunov/status/1113923886268276736.

Before compiling WarpLib.dll for WarpCraft, one should revert this change.

[biochem-fan]

I copied GPU.LocalFilter from an old commit at the gtom repository, renamed it to avoid conflicts with Warp, which needs the latest version of the function. Now compilation succeeded.

See
https://github.com/dtegunov/gtom/blob/d34f9a44080ce2a1b976dfae4b5ec152b174691d/src/Resolution/LocalFilter.cu. One has to update GPUAcceleration/Functions.h in warp as well.