Different results than REBASE?

[Ge0rges]

Hello,

I'm running MicrobeMod annotate_rm on the following reference genome. I get:

Operon	Gene	System Type	Gene type	HMM	Evalue	REBASE homolog	Homolog identity(%)	Homolog methylation	Homolog motif
RM Operon #1	NC_003910.7_2982	RM_Type_IV	RE	putative_typeiv	0.0	CpsORF3374P	100.0
Singleton #1	NC_003910.7_417	RM_Type_II	MT	Type_II_MTases_FAM_4	1.3e-86	M.CpsDamP	99.634	m6A	GATC
Singleton #2	NC_003910.7_442	RM_Type_II	MT	Type_II_MTases_FAM_1	3.2e-37	M.CpsORF501P	100.0
Singleton #3	NC_003910.7_560	RM_Type_II	RE	Type_II_REase14	8.7e-05
Singleton #4	NC_003910.7_1146	RM_Type_I	RE	Type_I_REases_FAM_2.einsi_trimmed	7.5e-11

Any idea why I would obtain different results than REBASE?