From 08fa8d464ca9af77b39b2a481c13e01ff0ac2c70 Mon Sep 17 00:00:00 2001
From: Judith Bernett <bernett@in.tum.de>
Date: Thu, 22 Jan 2026 15:59:07 +0100
Subject: [PATCH 1/3] new versions

---
 Dockerfile       |   2 +-
 poetry.lock      | 510 ++++++++++++++++++++++++++++-------------------
 requirements.txt |  43 ++--
 3 files changed, 330 insertions(+), 225 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 21e59f8c..0daefc19 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -4,7 +4,7 @@
 # The builder image, used to build the virtual environment
 FROM python:3.13-bookworm AS builder
 
-RUN pip install poetry==2.2.1
+RUN pip install poetry==2.3.1
 
 # POETRY_CACHE_DIR: When removing the cache folder, make sure this is done in the same RUN command. If it’s done in a
 # separate RUN command, the cache will still be part of the previous Docker layer (the one containing poetry install )
diff --git a/poetry.lock b/poetry.lock
index 6d0fed1c..6e8e7a5e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -274,14 +274,14 @@ testing = ["jaraco.test", "pytest (!=8.0.*)", "pytest (>=6,!=8.1.*)", "pytest-ch
 
 [[package]]
 name = "bandit"
-version = "1.9.2"
+version = "1.9.3"
 description = "Security oriented static analyser for python code."
 optional = false
 python-versions = ">=3.10"
 groups = ["development"]
 files = [
-    {file = "bandit-1.9.2-py3-none-any.whl", hash = "sha256:bda8d68610fc33a6e10b7a8f1d61d92c8f6c004051d5e946406be1fb1b16a868"},
-    {file = "bandit-1.9.2.tar.gz", hash = "sha256:32410415cd93bf9c8b91972159d5cf1e7f063a9146d70345641cd3877de348ce"},
+    {file = "bandit-1.9.3-py3-none-any.whl", hash = "sha256:4745917c88d2246def79748bde5e08b9d5e9b92f877863d43fab70cd8814ce6a"},
+    {file = "bandit-1.9.3.tar.gz", hash = "sha256:ade4b9b7786f89ef6fc7344a52b34558caec5da74cb90373aed01de88472f774"},
 ]
 
 [package.dependencies]
@@ -299,46 +299,46 @@ yaml = ["PyYAML"]
 
 [[package]]
 name = "black"
-version = "25.12.0"
+version = "26.1.0"
 description = "The uncompromising code formatter."
 optional = false
 python-versions = ">=3.10"
 groups = ["development"]
 files = [
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 ]
 
 [package.dependencies]
 click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
 packaging = ">=22.0"
-pathspec = ">=0.9.0"
+pathspec = ">=1.0.0"
 platformdirs = ">=2"
 pytokens = ">=0.3.0"
 
@@ -904,6 +904,60 @@ ssh = ["bcrypt (>=3.1.5)"]
 test = ["certifi (>=2024)", "cryptography-vectors (==46.0.3)", "pretend (>=0.7)", "pytest (>=7.4.0)", "pytest-benchmark (>=4.0)", "pytest-cov (>=2.10.1)", "pytest-xdist (>=3.5.0)"]
 test-randomorder = ["pytest-randomly"]
 
+[[package]]
+name = "cuda-bindings"
+version = "12.9.4"
+description = "Python bindings for CUDA"
+optional = false
+python-versions = "*"
+groups = ["main", "torch-cuda"]
+markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""
+files = [
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+]
+
+[package.dependencies]
+cuda-pathfinder = ">=1.1,<2.0"
+
+[package.extras]
+all = ["nvidia-cuda-nvcc-cu12", "nvidia-cuda-nvrtc-cu12", "nvidia-cufile-cu12 ; sys_platform == \"linux\"", "nvidia-nvjitlink-cu12 (>=12.3)"]
+test = ["cython (>=3.1,<3.2)", "numpy (>=1.21.1)", "pyglet (>=2.1.9)", "pytest (>=6.2.4)", "pytest-benchmark (>=3.4.1)", "setuptools (>=77.0.0)"]
+
+[[package]]
+name = "cuda-pathfinder"
+version = "1.3.3"
+description = "Pathfinder for CUDA components"
+optional = false
+python-versions = ">=3.10"
+groups = ["main", "torch-cuda"]
+markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""
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+
 [[package]]
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 version = "0.6.0"
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 groups = ["main"]
 files = [
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 ]
 
 [package.dependencies]
@@ -1041,8 +1089,9 @@ typing_extensions = {version = ">=4.6.0", markers = "python_version < \"3.12\""}
 urllib3 = ">=2.2.2"
 
 [package.extras]
+aiohttp = ["aiohttp"]
 colordiff = ["rich"]
-dev = ["codespell (==2.4.1)", "dissolve (>=0.1.1)", "mypy (==1.18.2)", "ruff (==0.13.2)"]
+dev = ["codespell (==2.4.1)", "dissolve (>=0.1.1)", "mypy (==1.19.1)", "ruff (==0.14.10)"]
 fastimport = ["fastimport"]
 fuzzing = ["atheris"]
 https = ["urllib3 (>=2.2.2)"]
@@ -2894,15 +2943,15 @@ files = [
 
 [[package]]
 name = "nvidia-nvshmem-cu12"
-version = "3.3.20"
+version = "3.4.5"
 description = "NVSHMEM creates a global address space that provides efficient and scalable communication for NVIDIA GPU clusters."
 optional = false
 python-versions = ">=3"
 groups = ["main", "torch-cuda"]
 markers = "platform_system == \"Linux\" and platform_machine == \"x86_64\""
 files = [
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 ]
 
 [[package]]
@@ -2921,14 +2970,14 @@ files = [
 
 [[package]]
 name = "packaging"
-version = "25.0"
+version = "26.0"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
 groups = ["main", "development"]
 files = [
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 ]
 
 [[package]]
@@ -3068,14 +3117,14 @@ test = ["pytest", "pytest-cov", "scipy"]
 
 [[package]]
 name = "pbs-installer"
-version = "2025.12.17"
+version = "2026.1.14"
 description = "Installer for Python Build Standalone"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
 files = [
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 ]
 
 [package.dependencies]
@@ -3245,14 +3294,14 @@ type = ["mypy (>=1.18.2)"]
 
 [[package]]
 name = "plotly"
-version = "6.5.1"
+version = "6.5.2"
 description = "An open-source interactive data visualization library for Python"
 optional = false
 python-versions = ">=3.8"
 groups = ["main"]
 files = [
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+    {file = "plotly-6.5.2.tar.gz", hash = "sha256:7478555be0198562d1435dee4c308268187553cc15516a2f4dd034453699e393"},
 ]
 
 [package.dependencies]
@@ -3285,30 +3334,30 @@ testing = ["coverage", "pytest", "pytest-benchmark"]
 
 [[package]]
 name = "poetry"
-version = "2.2.1"
+version = "2.3.1"
 description = "Python dependency management and packaging made easy."
 optional = false
-python-versions = "<4.0,>=3.9"
+python-versions = "<4.0,>=3.10"
 groups = ["main"]
 files = [
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+    {file = "poetry-2.3.1.tar.gz", hash = "sha256:423cbccfe3533155ce9f49e929780a1386e564b2d97d2380664ea388cfe1191c"},
 ]
 
 [package.dependencies]
 build = ">=1.2.1,<2.0.0"
 cachecontrol = {version = ">=0.14.0,<0.15.0", extras = ["filecache"]}
 cleo = ">=2.1.0,<3.0.0"
-dulwich = ">=0.24.0,<0.25.0"
+dulwich = ">=0.25.0,<0.26.0"
 fastjsonschema = ">=2.18.0,<3.0.0"
 findpython = ">=0.6.2,<0.8.0"
 installer = ">=0.7.0,<0.8.0"
 keyring = ">=25.1.0,<26.0.0"
 packaging = ">=24.2"
-pbs-installer = {version = ">=2025.1.6,<2026.0.0", extras = ["download", "install"]}
+pbs-installer = {version = ">=2025.6.10", extras = ["download", "install"]}
 pkginfo = ">=1.12,<2.0"
 platformdirs = ">=3.0.0,<5"
-poetry-core = "2.2.1"
+poetry-core = "2.3.0"
 pyproject-hooks = ">=1.0.0,<2.0.0"
 requests = ">=2.26,<3.0"
 requests-toolbelt = ">=1.0.0,<2.0.0"
@@ -3320,14 +3369,14 @@ xattr = {version = ">=1.0.0,<2.0.0", markers = "sys_platform == \"darwin\""}
 
 [[package]]
 name = "poetry-core"
-version = "2.2.1"
+version = "2.3.0"
 description = "Poetry PEP 517 Build Backend"
 optional = false
-python-versions = "<4.0,>=3.9"
+python-versions = "<4.0,>=3.10"
 groups = ["main"]
 files = [
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 [[package]]
@@ -3553,63 +3602,63 @@ test = ["psleak", "pytest", "pytest-instafail", "pytest-xdist", "setuptools"]
 
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 [[package]]
@@ -3626,15 +3675,15 @@ files = [
 
 [[package]]
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-version = "2.23"
+version = "3.0"
 description = "C parser in Python"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 groups = ["main"]
 markers = "implementation_name != \"PyPy\" and (platform_python_implementation != \"PyPy\" or sys_platform == \"darwin\") and (sys_platform == \"linux\" or sys_platform == \"darwin\")"
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 [[package]]
@@ -3840,14 +3889,14 @@ windows-terminal = ["colorama (>=0.4.6)"]
 
 [[package]]
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-version = "3.3.1"
+version = "3.3.2"
 description = "pyparsing - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.9"
 groups = ["main", "torch-cuda"]
 files = [
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 ]
 
 [package.extras]
@@ -3903,14 +3952,54 @@ six = ">=1.5"
 
 [[package]]
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+version = "0.4.0"
 description = "A Fast, spec compliant Python 3.14+ tokenizer that runs on older Pythons."
 optional = false
 python-versions = ">=3.8"
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 ]
 
 [package.extras]
@@ -4691,14 +4780,14 @@ jeepney = ">=0.6"
 
 [[package]]
 name = "sentry-sdk"
-version = "2.49.0"
+version = "2.50.0"
 description = "Python client for Sentry (https://sentry.io)"
 optional = false
 python-versions = ">=3.6"
 groups = ["main"]
 files = [
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 ]
 
 [package.dependencies]
@@ -4754,14 +4843,14 @@ unleash = ["UnleashClient (>=6.0.1)"]
 
 [[package]]
 name = "setuptools"
-version = "80.9.0"
+version = "80.10.1"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.9"
 groups = ["main", "torch-cuda"]
 files = [
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 ]
 markers = {torch-cuda = "python_version >= \"3.12\""}
 
@@ -4771,7 +4860,7 @@ core = ["importlib_metadata (>=6) ; python_version < \"3.10\"", "jaraco.functool
 cover = ["pytest-cov"]
 doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "pyproject-hooks (!=1.1)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier", "towncrier (<24.7)"]
 enabler = ["pytest-enabler (>=2.2)"]
-test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21) ; python_version >= \"3.9\" and sys_platform != \"cygwin\"", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf ; sys_platform != \"cygwin\"", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
+test = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "ini2toml[lite] (>=0.14)", "jaraco.develop (>=7.21) ; python_version >= \"3.9\" and sys_platform != \"cygwin\"", "jaraco.envs (>=2.2)", "jaraco.path (>=3.7.2)", "jaraco.test (>=5.5)", "packaging (>=24.2)", "pip (>=19.1)", "pyobjc (<12) ; sys_platform == \"darwin\" and python_version <= \"3.9\"", "pyproject-hooks (!=1.1)", "pytest (>=6,!=8.1.*)", "pytest-home (>=0.5)", "pytest-perf ; sys_platform != \"cygwin\"", "pytest-subprocess", "pytest-timeout", "pytest-xdist (>=3)", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel (>=0.44.0)"]
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 [[package]]
@@ -5058,14 +5147,14 @@ test = ["pytest"]
 
 [[package]]
 name = "starlette"
-version = "0.51.0"
+version = "0.52.1"
 description = "The little ASGI library that shines."
 optional = false
 python-versions = ">=3.10"
 groups = ["main", "development"]
 files = [
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 ]
 
 [package.dependencies]
@@ -5247,43 +5336,44 @@ files = [
 
 [[package]]
 name = "torch"
-version = "2.9.1"
+version = "2.10.0"
 description = "Tensors and Dynamic neural networks in Python with strong GPU acceleration"
 optional = false
 python-versions = ">=3.10"
 groups = ["main", "torch-cuda"]
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 [package.dependencies]
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 filelock = "*"
 fsspec = ">=0.8.5"
 jinja2 = "*"
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 sympy = ">=1.13.3"
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 typing-extensions = ">=4.10.0"
 
 [package.extras]
@@ -5423,27 +5513,27 @@ telegram = ["requests"]
 
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 [package.extras]
@@ -5453,14 +5543,14 @@ tutorials = ["matplotlib", "pandas", "tabulate"]
 
 [[package]]
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+version = "2026.1.14.14"
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 optional = false
 python-versions = "*"
 groups = ["main"]
 files = [
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-    {file = "trove_classifiers-2026.1.12.15.tar.gz", hash = "sha256:832a7e89ccc43b64b89f8f9d9150c069ebcd17d2dc68279bc00bb53f2a9ae112"},
+    {file = "trove_classifiers-2026.1.14.14-py3-none-any.whl", hash = "sha256:1f9553927f18d0513d8e5ff80ab8980b8202ce37ecae0e3274ed2ef11880e74d"},
+    {file = "trove_classifiers-2026.1.14.14.tar.gz", hash = "sha256:00492545a1402b09d4858605ba190ea33243d361e2b01c9c296ce06b5c3325f3"},
 ]
 
 [[package]]
diff --git a/requirements.txt b/requirements.txt
index 930ff6d7..eaf80e51 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,6 +1,7 @@
 aiohappyeyeballs==2.6.1 ; python_version >= "3.11" and python_version < "3.14"
 aiohttp==3.13.3 ; python_version >= "3.11" and python_version < "3.14"
 aiosignal==1.4.0 ; python_version >= "3.11" and python_version < "3.14"
+annotated-types==0.7.0 ; python_version >= "3.11" and python_version < "3.14"
 anyio==4.12.1 ; python_version >= "3.11" and python_version < "3.14"
 attrs==25.4.0 ; python_version >= "3.11" and python_version < "3.14"
 backports-tarfile==1.2.0 ; python_version == "3.11"
@@ -11,14 +12,17 @@ certifi==2026.1.4 ; python_version >= "3.11" and python_version < "3.14"
 cffi==2.0.0 ; python_version >= "3.11" and python_version < "3.14" and (platform_python_implementation != "PyPy" or sys_platform == "darwin") and (sys_platform == "linux" or sys_platform == "darwin")
 charset-normalizer==3.4.4 ; python_version >= "3.11" and python_version < "3.14"
 cleo==2.1.0 ; python_version >= "3.11" and python_version < "3.14"
+click==8.3.1 ; python_version >= "3.11" and python_version < "3.14"
 colorama==0.4.6 ; python_version >= "3.11" and python_version < "3.14" and (platform_system == "Windows" or sys_platform == "win32" or os_name == "nt")
 contourpy==1.3.3 ; python_version >= "3.11" and python_version < "3.14"
 crashtest==0.4.1 ; python_version >= "3.11" and python_version < "3.14"
 cryptography==46.0.3 ; python_version >= "3.11" and python_version < "3.14" and sys_platform == "linux"
+cuda-bindings==12.9.4 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
+cuda-pathfinder==1.3.3 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
 curve-curator==0.6.0 ; python_version >= "3.11" and python_version < "3.14"
 cycler==0.12.1 ; python_version >= "3.11" and python_version < "3.14"
 distlib==0.4.0 ; python_version >= "3.11" and python_version < "3.14"
-dulwich==0.24.10 ; python_version >= "3.11" and python_version < "3.14"
+dulwich==0.25.2 ; python_version >= "3.11" and python_version < "3.14"
 fastjsonschema==2.21.2 ; python_version >= "3.11" and python_version < "3.14"
 filelock==3.20.3 ; python_version >= "3.11" and python_version < "3.14"
 findpython==0.7.1 ; python_version >= "3.11" and python_version < "3.14"
@@ -26,6 +30,8 @@ flaky==3.8.1 ; python_version >= "3.11" and python_version < "3.14"
 fonttools==4.61.1 ; python_version >= "3.11" and python_version < "3.14"
 frozenlist==1.8.0 ; python_version >= "3.11" and python_version < "3.14"
 fsspec==2026.1.0 ; python_version >= "3.11" and python_version < "3.14"
+gitdb==4.0.12 ; python_version >= "3.11" and python_version < "3.14"
+gitpython==3.1.46 ; python_version >= "3.11" and python_version < "3.14"
 h11==0.16.0 ; python_version >= "3.11" and python_version < "3.14"
 httpcore==1.0.9 ; python_version >= "3.11" and python_version < "3.14"
 httpx==0.28.1 ; python_version >= "3.11" and python_version < "3.14"
@@ -45,6 +51,7 @@ kiwisolver==1.4.9 ; python_version >= "3.11" and python_version < "3.14"
 lightning-utilities==0.15.2 ; python_version >= "3.11" and python_version < "3.14"
 markupsafe==3.0.3 ; python_version >= "3.11" and python_version < "3.14"
 matplotlib==3.10.8 ; python_version >= "3.11" and python_version < "3.14"
+mock==5.2.0 ; python_version >= "3.11" and python_version < "3.14"
 more-itertools==10.8.0 ; python_version >= "3.11" and python_version < "3.14"
 mpmath==1.3.0 ; python_version >= "3.11" and python_version < "3.14"
 msgpack==1.1.2 ; python_version >= "3.11" and python_version < "3.14"
@@ -65,23 +72,26 @@ nvidia-cusparse-cu12==12.5.8.93 ; python_version >= "3.11" and python_version <
 nvidia-cusparselt-cu12==0.7.1 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
 nvidia-nccl-cu12==2.27.5 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
 nvidia-nvjitlink-cu12==12.8.93 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
-nvidia-nvshmem-cu12==3.3.20 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
+nvidia-nvshmem-cu12==3.4.5 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
 nvidia-nvtx-cu12==12.8.90 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
-packaging==25.0 ; python_version >= "3.11" and python_version < "3.14"
+packaging==26.0 ; python_version >= "3.11" and python_version < "3.14"
 pandas==2.3.3 ; python_version >= "3.11" and python_version < "3.14"
 patsy==1.0.2 ; python_version >= "3.11" and python_version < "3.14"
-pbs-installer==2025.12.17 ; python_version >= "3.11" and python_version < "3.14"
+pbs-installer==2026.1.14 ; python_version >= "3.11" and python_version < "3.14"
 pillow==12.1.0 ; python_version >= "3.11" and python_version < "3.14"
 pkginfo==1.12.1.2 ; python_version >= "3.11" and python_version < "3.14"
 platformdirs==4.5.1 ; python_version >= "3.11" and python_version < "3.14"
-plotly==6.5.1 ; python_version >= "3.11" and python_version < "3.14"
+plotly==6.5.2 ; python_version >= "3.11" and python_version < "3.14"
 pluggy==1.6.0 ; python_version >= "3.11" and python_version < "3.14"
-poetry-core==2.2.1 ; python_version >= "3.11" and python_version < "3.14"
-poetry==2.2.1 ; python_version >= "3.11" and python_version < "3.14"
+poetry-core==2.3.0 ; python_version >= "3.11" and python_version < "3.14"
+poetry==2.3.1 ; python_version >= "3.11" and python_version < "3.14"
 propcache==0.4.1 ; python_version >= "3.11" and python_version < "3.14"
+protobuf==6.33.4 ; python_version >= "3.11" and python_version < "3.14"
 psutil==7.2.1 ; python_version >= "3.11" and python_version < "3.14"
-pycparser==2.23 ; python_version >= "3.11" and python_version < "3.14" and implementation_name != "PyPy" and (platform_python_implementation != "PyPy" or sys_platform == "darwin") and (sys_platform == "linux" or sys_platform == "darwin")
-pyparsing==3.3.1 ; python_version >= "3.11" and python_version < "3.14"
+pycparser==3.0 ; python_version >= "3.11" and python_version < "3.14" and implementation_name != "PyPy" and (platform_python_implementation != "PyPy" or sys_platform == "darwin") and (sys_platform == "linux" or sys_platform == "darwin")
+pydantic-core==2.41.5 ; python_version >= "3.11" and python_version < "3.14"
+pydantic==2.12.5 ; python_version >= "3.11" and python_version < "3.14"
+pyparsing==3.3.2 ; python_version >= "3.11" and python_version < "3.14"
 pyproject-hooks==1.2.0 ; python_version >= "3.11" and python_version < "3.14"
 pytest==7.4.4 ; python_version >= "3.11" and python_version < "3.14"
 python-dateutil==2.9.0.post0 ; python_version >= "3.11" and python_version < "3.14"
@@ -97,26 +107,31 @@ scikit-posthocs==0.11.4 ; python_version >= "3.11" and python_version < "3.14"
 scipy==1.17.0 ; python_version >= "3.11" and python_version < "3.14"
 seaborn==0.13.2 ; python_version >= "3.11" and python_version < "3.14"
 secretstorage==3.5.0 ; python_version >= "3.11" and python_version < "3.14" and sys_platform == "linux"
-setuptools==80.9.0 ; python_version >= "3.11" and python_version < "3.14"
+sentry-sdk==2.50.0 ; python_version >= "3.11" and python_version < "3.14"
+setuptools==80.10.1 ; python_version >= "3.11" and python_version < "3.14"
 shellingham==1.5.4 ; python_version >= "3.11" and python_version < "3.14"
 six==1.17.0 ; python_version >= "3.11" and python_version < "3.14"
-starlette==0.51.0 ; python_version >= "3.11" and python_version < "3.14"
+smmap==5.0.2 ; python_version >= "3.11" and python_version < "3.14"
+starlette==0.52.1 ; python_version >= "3.11" and python_version < "3.14"
 statsmodels==0.14.6 ; python_version >= "3.11" and python_version < "3.14"
+subword-nmt==0.3.8 ; python_version >= "3.11" and python_version < "3.14"
 sympy==1.14.0 ; python_version >= "3.11" and python_version < "3.14"
 threadpoolctl==3.6.0 ; python_version >= "3.11" and python_version < "3.14"
 toml==0.10.2 ; python_version >= "3.11" and python_version < "3.14"
 tomlkit==0.14.0 ; python_version >= "3.11" and python_version < "3.14"
 torch-geometric==2.7.0 ; python_version >= "3.11" and python_version < "3.14"
-torch==2.9.1 ; python_version >= "3.11" and python_version < "3.14"
+torch==2.10.0 ; python_version >= "3.11" and python_version < "3.14"
 torchmetrics==1.8.2 ; python_version >= "3.11" and python_version < "3.14"
 tornado==6.5.4 ; python_version >= "3.11" and python_version < "3.14" and sys_platform != "emscripten"
 tqdm==4.67.1 ; python_version >= "3.11" and python_version < "3.14"
-triton==3.5.1 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
-trove-classifiers==2026.1.12.15 ; python_version >= "3.11" and python_version < "3.14"
+triton==3.6.0 ; python_version >= "3.11" and python_version < "3.14" and platform_system == "Linux" and platform_machine == "x86_64"
+trove-classifiers==2026.1.14.14 ; python_version >= "3.11" and python_version < "3.14"
 typing-extensions==4.15.0 ; python_version >= "3.11" and python_version < "3.14"
+typing-inspection==0.4.2 ; python_version >= "3.11" and python_version < "3.14"
 tzdata==2025.3 ; python_version >= "3.11" and python_version < "3.14"
 urllib3==2.6.3 ; python_version >= "3.11" and python_version < "3.14"
 virtualenv==20.36.1 ; python_version >= "3.11" and python_version < "3.14"
+wandb==0.24.0 ; python_version >= "3.11" and python_version < "3.14"
 xattr==1.3.0 ; python_version >= "3.11" and python_version < "3.14" and sys_platform == "darwin"
 xxhash==3.6.0 ; python_version >= "3.11" and python_version < "3.14"
 xyzservices==2025.11.0 ; python_version >= "3.11" and python_version < "3.14"

From 77bd8a67de8b314ea9cc239dadf43fc7dbcb6f98 Mon Sep 17 00:00:00 2001
From: Judith Bernett <bernett@in.tum.de>
Date: Thu, 22 Jan 2026 16:01:59 +0100
Subject: [PATCH 2/3] updating to v1.4.2, too

---
 docs/conf.py   | 5 +++--
 pyproject.toml | 2 +-
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/docs/conf.py b/docs/conf.py
index b5f3d2d4..8e21b68a 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -1,5 +1,6 @@
 #!/usr/bin/env python
 """Configuration file for the Sphinx documentation builder."""
+
 # mypy: ignore-errors
 # drevalpy documentation build configuration file
 #
@@ -56,9 +57,9 @@
 # the built documents.
 #
 # The short X.Y version.
-version = "1.4.1"
+version = "1.4.2"
 # The full version, including alpha/beta/rc tags.
-release = "1.4.1"
+release = "1.4.2"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
diff --git a/pyproject.toml b/pyproject.toml
index 17a62ab4..d6056275 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "drevalpy"
-version = "1.4.1"
+version = "1.4.2"
 description = "Drug response evaluation of cancer cell line drug response models in a fair setting"
 authors = ["DrEvalPy development team"]
 license = "GPL-3.0"

From e442d39d408dcf87c77f818f3fbbf7f1bcba3a85 Mon Sep 17 00:00:00 2001
From: Judith Bernett <bernett@in.tum.de>
Date: Thu, 22 Jan 2026 16:04:31 +0100
Subject: [PATCH 3/3] updating to new black conventions

---
 drevalpy/datasets/featurizer/create_molgnet_embeddings.py | 1 +
 drevalpy/models/MOLIR/molir.py                            | 4 ++--
 drevalpy/models/SuperFELTR/superfeltr.py                  | 2 +-
 3 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/drevalpy/datasets/featurizer/create_molgnet_embeddings.py b/drevalpy/datasets/featurizer/create_molgnet_embeddings.py
index 23b320a0..2d337e80 100644
--- a/drevalpy/datasets/featurizer/create_molgnet_embeddings.py
+++ b/drevalpy/datasets/featurizer/create_molgnet_embeddings.py
@@ -4,6 +4,7 @@
 Creates MolGNet embeddings for molecules given their SMILES strings. This module needs torch_scatter.
     python create_molgnet_embeddings.py dataset_name --checkpoint meta/MolGNet.pt --data_path data
 """
+
 import argparse
 import math
 import os
diff --git a/drevalpy/models/MOLIR/molir.py b/drevalpy/models/MOLIR/molir.py
index 62e76d87..4aaab346 100644
--- a/drevalpy/models/MOLIR/molir.py
+++ b/drevalpy/models/MOLIR/molir.py
@@ -183,13 +183,13 @@ def predict(
             cell_line_input=cell_line_input,
             drug_input=drug_input,
         )
-        (gene_expression, mutations, cnvs) = (
+        gene_expression, mutations, cnvs = (
             input_data["gene_expression"],
             input_data["mutations"],
             input_data["copy_number_variation_gistic"],
         )
 
-        (gene_expression, mutations, cnvs) = filter_and_sort_omics(
+        gene_expression, mutations, cnvs = filter_and_sort_omics(
             model=self, gene_expression=gene_expression, mutations=mutations, cnvs=cnvs, cell_line_input=cell_line_input
         )
 
diff --git a/drevalpy/models/SuperFELTR/superfeltr.py b/drevalpy/models/SuperFELTR/superfeltr.py
index 59da1e1d..6334dfc5 100644
--- a/drevalpy/models/SuperFELTR/superfeltr.py
+++ b/drevalpy/models/SuperFELTR/superfeltr.py
@@ -237,7 +237,7 @@ def predict(
         mutations = input_data["mutations"]
         cnvs = input_data["copy_number_variation_gistic"]
 
-        (gene_expression, mutations, cnvs) = filter_and_sort_omics(
+        gene_expression, mutations, cnvs = filter_and_sort_omics(
             model=self, gene_expression=gene_expression, mutations=mutations, cnvs=cnvs, cell_line_input=cell_line_input
         )