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Having immediately available QC helps users iterate and make sure they got the right and stable fitting configuration without having to spin up additional analysis software.
Here's two to do:
- This is copied from: Feature request - log-likelihood output file FangfeiLi05/PyFitSeq#10
It is useful to see the trajectory of changes in the log-likelihood to analyze the kinetics of the optimization.
Presently, I think that's just output to stdout.
Let's add an argument, if set, will write LL to a file (set by the argument of course!!!) - This is copied from: Feature request - QC histogram of fitnesses FangfeiLi05/PyFitSeq#9
It's often diagnostic to see how the fitnesses are distributed. Sometimes they can look funny,
indicating parameters are converging strangely. A diagnostic histogram of fitnesses would be a handy output!
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