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kushalbakshikushalbakshi
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Merge pull request #185 from datajoint/pytest
Add pytest
2 parents cc36465 + 333f411 commit 9299142

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‎CHANGELOG.md‎

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Observes [Semantic Versioning](https://semver.org/spec/v2.0.0.html) standard and
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[Keep a Changelog](https://keepachangelog.com/en/1.0.0/) convention.
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## [0.3.4] - 2024-03-22
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+ Add - pytest
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+ Update - Ephys schema changed from `ephys_acute` to `ephys_no_curation` in `tutorial.ipynb`
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## [0.3.3] - 2024-01-24
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+ Update - remove PyPi release from `release.yml` since it will fail after the new `setup.py`
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‎element_array_ephys/ephys_acute.py‎

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@@ -1044,9 +1044,11 @@ def make(self, key):
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spike_time_key = (
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"spike_times_sec_adj"
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if "spike_times_sec_adj" in kilosort_dataset.data
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else "spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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else (
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"spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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)
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)
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spike_times = kilosort_dataset.data[spike_time_key]
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kilosort_dataset.extract_spike_depths()
@@ -1081,11 +1083,13 @@ def make(self, key):
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"spike_sites": spike_sites[
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kilosort_dataset.data["spike_clusters"] == unit
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],
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"spike_depths": spike_depths[
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kilosort_dataset.data["spike_clusters"] == unit
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]
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if spike_depths is not None
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else None,
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"spike_depths": (
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spike_depths[
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kilosort_dataset.data["spike_clusters"] == unit
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]
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if spike_depths is not None
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else None
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),
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}
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)
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‎element_array_ephys/ephys_chronic.py‎

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@@ -973,9 +973,11 @@ def make(self, key):
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spike_time_key = (
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"spike_times_sec_adj"
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if "spike_times_sec_adj" in kilosort_dataset.data
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else "spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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else (
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"spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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)
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)
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spike_times = kilosort_dataset.data[spike_time_key]
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kilosort_dataset.extract_spike_depths()
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"spike_sites": spike_sites[
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kilosort_dataset.data["spike_clusters"] == unit
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],
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"spike_depths": spike_depths[
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kilosort_dataset.data["spike_clusters"] == unit
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]
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if spike_depths is not None
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else None,
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"spike_depths": (
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spike_depths[
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kilosort_dataset.data["spike_clusters"] == unit
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]
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if spike_depths is not None
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else None
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),
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}
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)
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‎element_array_ephys/ephys_no_curation.py‎

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@@ -988,9 +988,11 @@ def make(self, key):
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spike_time_key = (
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"spike_times_sec_adj"
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if "spike_times_sec_adj" in kilosort_dataset.data
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else "spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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else (
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"spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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)
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)
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spike_times = kilosort_dataset.data[spike_time_key]
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kilosort_dataset.extract_spike_depths()

‎element_array_ephys/ephys_precluster.py‎

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@@ -962,9 +962,11 @@ def make(self, key):
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spike_time_key = (
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"spike_times_sec_adj"
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if "spike_times_sec_adj" in kilosort_dataset.data
965-
else "spike_times_sec"
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if "spike_times_sec" in kilosort_dataset.data
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else "spike_times"
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else (
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"spike_times_sec"
967+
if "spike_times_sec" in kilosort_dataset.data
968+
else "spike_times"
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)
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)
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spike_times = kilosort_dataset.data[spike_time_key]
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kilosort_dataset.extract_spike_depths()
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"spike_sites": spike_sites[
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kilosort_dataset.data["spike_clusters"] == unit
10011003
],
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"spike_depths": spike_depths[
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kilosort_dataset.data["spike_clusters"] == unit
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]
1005-
if spike_depths is not None
1006-
else None,
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"spike_depths": (
1005+
spike_depths[
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kilosort_dataset.data["spike_clusters"] == unit
1007+
]
1008+
if spike_depths is not None
1009+
else None
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),
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}
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)
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‎element_array_ephys/ephys_report.py‎

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@@ -75,9 +75,11 @@ def make(self, key):
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fig_prefix = (
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"-".join(
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[
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v.strftime("%Y%m%d%H%M%S")
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if isinstance(v, datetime.datetime)
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else str(v)
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(
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v.strftime("%Y%m%d%H%M%S")
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if isinstance(v, datetime.datetime)
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else str(v)
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)
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for v in key.values()
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]
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)

‎element_array_ephys/probe.py‎

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"""
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Neuropixels Probes
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"""
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import datajoint as dj
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from .readers import probe_geometry

‎element_array_ephys/version.py‎

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"""Package metadata."""
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__version__ = "0.3.3"
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__version__ = "0.3.4"

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