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7 | 7 | "source": [ |
8 | 8 | "# DataJoint Elements for Array Electrophysiology with NeuroPixels\n", |
9 | 9 | "\n", |
10 | | - "#### Open-source Data Pipeline for Processing and Analyzing Extracellular Electrophysiology Datasets\n", |
| 10 | + "#### Open-source data pipeline for processing and analyzing extracellular electrophysiology datasets.\n", |
11 | 11 | "\n", |
12 | 12 | "Welcome to the tutorial for the DataJoint Element for extracellular array electrophysiology. This\n", |
13 | 13 | "tutorial aims to provide a comprehensive understanding of the open-source data pipeline\n", |
14 | 14 | "created using `element-array-ephys`.\n", |
15 | 15 | "\n", |
16 | | - "This package is designed to seamlessly process and ingest extracellular electrophysiology\n", |
| 16 | + "This package is designed to seamlessly process, ingest, and track extracellular electrophysiology\n", |
17 | 17 | "data, along with its associated probe and recording metadata. By the end of this\n", |
18 | 18 | "tutorial you will have a clear grasp on setting up and integrating `element-array-ephys`\n", |
19 | 19 | "into your specific research projects and lab. \n", |
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48 | 48 | "and manage sessions of array electrophysiology data, including spike sorting results and\n", |
49 | 49 | "unit-level visualizations. \n", |
50 | 50 | "\n", |
51 | | - "The results of this Element example can be combined with **other modalities** to create\n", |
52 | | - "a complete customizable data pipeline for your specific lab or study. For instance, you\n", |
| 51 | + "The results of this Element can be combined with **other modalities** to create\n", |
| 52 | + "a complete, customizable data pipeline for your specific lab or study. For instance, you\n", |
53 | 53 | "can combine `element-array-ephys` with `element-calcium-imaging` and\n", |
54 | 54 | "`element-deeplabcut` to characterize the neural activity along with markless\n", |
55 | 55 | "pose-estimation during behavior.\n", |
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73 | 73 | "cell_type": "markdown", |
74 | 74 | "metadata": {}, |
75 | 75 | "source": [ |
76 | | - "If the tutorial is run in Codespaces, there is a local database private to you for\n", |
77 | | - "experimentation. Let's connect to the database server." |
| 76 | + "If the tutorial is run in Codespaces, a private, local database server is created and\n", |
| 77 | + "made available for you. This is where we will insert and store our processed results.\n", |
| 78 | + "Let's connect to the database server." |
78 | 79 | ] |
79 | 80 | }, |
80 | 81 | { |
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613 | 614 | "As evident from the diagram, this data pipeline encompasses tables associated with\n", |
614 | 615 | "recording and probe metadata, results of clustering, and optional curation of clustering\n", |
615 | 616 | "results. A few tables, such as `subject.Subject` or `session.Session`,\n", |
616 | | - "while important for a complete pipeline, fall outside the scope of `element-array-ephys`\n", |
| 617 | + "while important for a complete pipeline, fall outside the scope of the `element-array-ephys`\n", |
617 | 618 | "tutorial, and will therefore, not be explored extensively here. The primary focus of\n", |
618 | 619 | "this tutorial will be on the `probe` and `ephys` schemas.\n", |
619 | 620 | "\n", |
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