Skip to content

git pull -recurse-submodules outputs a lot of "Could not access submodule" #25

@soichih

Description

@soichih

I don't know if is a preexisting error messages or not, but recently started noticing these messages when I run git pull -recurse-submodules on the datasets.datalad.org root directory.

hayashis@dev1:/mnt/scratch/datalad-test/datasets.datalad.org $ git pull --recurse-submodules
Fetching submodule abide
Could not access submodule 'Derivatives'Could not access submodule 'PhenotypicData'Could not access submodule 'RawData'Could not access submodule 'RawDataBIDS'Could not access submodule 'Resources'Fetching submodule abide2
Could not access submodule 'RawData'Fetching submodule adhd200
Could not access submodule 'RawData'Could not access submodule 'RawDataBIDS'Could not access submodule 'Resources'Could not access submodule 'surfaces'Fetching submodule allen-brain-observatory
Could not access submodule 'visual-coding-2p'Could not access submodule 'visual-coding-neuropixels'Fetching submodule cifar
Fetching submodule conp-dataset
Could not access submodule 'projects/1000GenomesProject'Could not access submodule 'projects/BigBrain'Could not access submodule 'projects/BigBrain_3DClassifiedVolumes'Could not access submodule 'projects/BigBrain_3DSurfaces'Could not access submodule 'projects/Brainspan'Could not access submodule 'projects/Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_'Could not access submodule 'projects/Intracellular_Recordings_of_Murine_Neocortical_Neurons'Could not access submodule 'projects/Khanlab/BigBrainHippoUnfold'Could not access submodule 'projects/Khanlab/BigBrainMRICoreg'Could not access submodule 'projects/Khanlab/HCPUR100-Template'Could not access submodule 'projects/Learning_Naturalistic_Structure__Processed_fMRI_dataset'Could not access submodule 'projects/MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_'Could not access submodule 'projects/PERFORM_Dataset__one_control_subject'Could not access submodule 'projects/Reusing-Neuro-Data'Could not access submodule 'projects/SIMON-dataset'Could not access submodule 'projects/VFA_T1_mapping___RTHawk__open__vs_Siemens__commercial_'Could not access submodule 'projects/celltypes'Could not access submodule 'projects/mcgill-emc-rna-seq-experiment'Could not access submodule 'projects/mm_neo_atlas'Could not access submodule 'projects/multicenter-phantom'Could not access submodule 'projects/nhpatlas'Could not access submodule 'projects/openpain/BrainNetworkChange_Mano'Could not access submodule 'projects/openpain/cbp_resting'Could not access submodule 'projects/openpain/placebo_1'Could not access submodule 'projects/openpain/placebo_predict_tetreault'Could not access submodule 'projects/openpain/subacute_longitudinal_study'Could not access submodule 'projects/openpain/thermal'Could not access submodule 'projects/preventad-open'Could not access submodule 'projects/refseq/refseq_Callithrix_jacchus'Could not access submodule 'projects/refseq/refseq_Homo_sapiens'Could not access submodule 'projects/refseq/refseq_Mus_musculus'Could not access submodule 'projects/visual-working-memory'Could not access submodule 'scripts/dats_validator/conp-dats'Fetching submodule corr
Could not access submodule 'JHU-preproc-connectomes'Could not access submodule 'RawData'Could not access submodule 'RawDataBIDS'Could not access submodule 'Resources'Fetching submodule crcns
Could not access submodule 'aa-1'Could not access submodule 'aa-2'Could not access submodule 'aa-3'Could not access submodule 'ac-1'Could not access submodule 'ac-2'Could not access submodule 'ac-3'Could not access submodule 'alm-1'Could not access submodule 'alm-2'Could not access submodule 'alm-3'Could not access submodule 'alm-4'Could not access submodule 'alm-5'Could not access submodule 'am-1'Could not access submodule 'am-2'Could not access submodule 'am-3'Could not access submodule 'apl-1'Could not access submodule 'bf-1'Could not access submodule 'bf-2'Could not access submodule 'bst-1'Could not access submodule 'cai-1'Could not access submodule 'cai-2'Could not access submodule 'cai-3'Could not access submodule 'cb-1'Could not access submodule 'ch-epfl-2009'Could not access submodule 'dream'Could not access submodule 'evi-1'Could not access submodule 'eye-1'Could not access submodule 'fcx-1'Could not access submodule 'fcx-2'Could not access submodule 'fcx-3'Could not access submodule 'fly-1'Could not access submodule 'hc-1'Could not access submodule 'hc-10'Could not access submodule 'hc-11'Could not access submodule 'hc-12'Could not access submodule 'hc-13'Could not access submodule 'hc-14'Could not access submodule 'hc-15'Could not access submodule 'hc-16'Could not access submodule 'hc-17'Could not access submodule 'hc-18'Could not access submodule 'hc-19'Could not access submodule 'hc-2'Could not access submodule 'hc-20'Could not access submodule 'hc-21'Could not access submodule 'hc-3'Could not access submodule 'hc-4'Could not access submodule 'hc-5'Could not access submodule 'hc-6'Could not access submodule 'hc-7'Could not access submodule 'hc-8'Could not access submodule 'hc-9'Could not access submodule 'hdr-1'Could not access submodule 'ia-1'Could not access submodule 'ieeg-1'Could not access submodule 'infe-1'Could not access submodule 'lgn-1'Could not access submodule 'mgsm-1'Could not access submodule 'mt-1'Could not access submodule 'mt-2'Could not access submodule 'nwb-1'Could not access submodule 'ofc-1'Could not access submodule 'ofc-2'Could not access submodule 'ofc-3'Could not access submodule 'pag-1'Could not access submodule 'pfc-1'Could not access submodule 'pfc-2'Could not access submodule 'pfc-3'Could not access submodule 'pfc-4'Could not access submodule 'pfc-5'Could not access submodule 'pfc-6'Could not access submodule 'pfc-7'Could not access submodule 'pmd-1'Could not access submodule 'ppc-1'Could not access submodule 'pvc-1'Could not access submodule 'pvc-10'Could not access submodule 'pvc-11'Could not access submodule 'pvc-12'Could not access submodule 'pvc-2'Could not access submodule 'pvc-3'Could not access submodule 'pvc-4'Could not access submodule 'pvc-5'Could not access submodule 'pvc-6'Could not access submodule 'pvc-7'Could not access submodule 'pvc-8'Could not access submodule 'pvc-9'Could not access submodule 'ret-1'Could not access submodule 'sim-1'Could not access submodule 'snr-1'Could not access submodule 'spe-1'Could not access submodule 'spe-2'Could not access submodule 'ssc-1'Could not access submodule 'ssc-2'Could not access submodule 'ssc-3'Could not access submodule 'ssc-4'Could not access submodule 'ssc-5'Could not access submodule 'ssc-6'Could not access submodule 'ssc-7'Could not access submodule 'ssc-8'Could not access submodule 'stc-1'Could not access submodule 'tes-1'Could not access submodule 'th-1'Could not access submodule 'v1v2-1'Could not access submodule 'v2-1'Could not access submodule 'vim-1'Could not access submodule 'vim-2'Could not access submodule 'vim-3'Could not access submodule 'vta-1'Could not access submodule 'zipser-1'Fetching submodule datalad
Could not access submodule 'artwork'Could not access submodule 'asv-containers'Fetching submodule dbic
Could not access submodule 'QA'Fetching submodule devel
Could not access submodule 'travis-buildlogs'Fetching submodule dicoms
Could not access submodule 'dartmouth-phantoms'Could not access submodule 'dcm2niix-tests'Could not access submodule 'rosetta'Could not access submodule 'salo'Could not access submodule 'umass-philips'Could not access submodule 'velasco'Fetching submodule hbnssi
Could not access submodule 'RawData'Could not access submodule 'hcp-openaccess'Fetching submodule indi
Could not access submodule 'HypnosisBarrios'Could not access submodule 'PRIME'Could not access submodule 'fcon1000'Fetching submodule kaggle
Could not access submodule 'melbourne-university-seizure-prediction'Fetching submodule labs
Could not access submodule 'bmmr'Could not access submodule 'buzsaki'Could not access submodule 'churchland'Could not access submodule 'gobbini'Could not access submodule 'hasson'Could not access submodule 'haxby'Could not access submodule 'mitchell'Could not access submodule 'mvdm'Could not access submodule 'openneurolab'Could not access submodule 'poldrack'Could not access submodule 'svoboda'Could not access submodule 'tarr'Fetching submodule neurovault
Could not access submodule 'snapshots'Fetching submodule nidm
Could not access submodule 'fbirn_phaseIII'Could not access submodule 'openfmri'Could not access submodule 'openneuro'Fetching submodule physionet
Could not access submodule 'eegmmidb'Fetching submodule repronim
Could not access submodule 'containers'Could not access submodule 'ds000003-qc'Fetching submodule simon
Fetching submodule templateflow
Could not access submodule 'tpl-MNI152Lin'Could not access submodule 'tpl-MNI152NLin2009cAsym'Could not access submodule 'tpl-MNI152NLin2009cSym'Could not access submodule 'tpl-MNI152NLin6Asym'Could not access submodule 'tpl-MNI152NLin6Sym'Could not access submodule 'tpl-MNIInfant'Could not access submodule 'tpl-MNIPediatricAsym'Could not access submodule 'tpl-NKI'Could not access submodule 'tpl-OASIS30ANTs'Could not access submodule 'tpl-PNC'Could not access submodule 'tpl-WHS'Could not access submodule 'tpl-fsLR'Could not access submodule 'tpl-fsaverage'Fetching submodule workshops
Could not access submodule 'mind-2017'Could not access submodule 'nih-2017'Could not access submodule 'nipype-2017'Could not access submodule 'repronim-sfn-2017'

When I actually do get pull under those submodules, it seems to run successfully, and I get do datalad get on some files, so these error messages might be non-issues, but I just wanted check it experts! @yarikoptic @mih

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions