From dab29f66656226540731f417f1860e1d3d032368 Mon Sep 17 00:00:00 2001 From: adehad <26027314+adehad@users.noreply.github.com> Date: Mon, 6 May 2024 15:16:46 +0100 Subject: [PATCH] pdm based build system --- .github/workflows/python-app.yml | 53 ++- .gitignore | 3 + README.txt | 46 --- pdm.lock | 324 ++++++++++++++++++ pyproject.toml | 35 +- requirements.txt | 1 - setup.py | 2 +- lttbc.c => src/lttbc/lttbc.c | 0 tests/__init__.py | 0 .../test_downsample.py | 0 tox.ini | 11 - 11 files changed, 390 insertions(+), 85 deletions(-) delete mode 100644 README.txt create mode 100644 pdm.lock delete mode 100644 requirements.txt rename lttbc.c => src/lttbc/lttbc.c (100%) create mode 100644 tests/__init__.py rename test_downsample.py => tests/test_downsample.py (100%) delete mode 100644 tox.ini diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml index 55bdb90..6629fd1 100644 --- a/.github/workflows/python-app.yml +++ b/.github/workflows/python-app.yml @@ -8,27 +8,54 @@ on: jobs: build: - runs-on: ${{ matrix.os }} strategy: matrix: - os: [ubuntu-latest] + os: [ubuntu-latest, windows-latest] python-version: ["3.8", "3.9", "3.10", "3.11"] - steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v2 + uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} + cache: pip - name: Install dependencies - run: | - python -m pip install --upgrade pip - python -m pip install flake8 pytest - if [ -f requirements.txt ]; then pip install -r requirements.txt; fi + run: python -m pip install --upgrade pdm + - name: Add msbuild to PATH + if: ${{ runner.os == 'Windows' }} + uses: microsoft/setup-msbuild@v2 - name: Build package - run: | - python -m pip install . -v + run: pdm build -v + - name: Install + if: ${{ matrix.python-version == '3.11' }} + run: pdm install -G:all - name: Test with pytest - run: | - pytest + if: ${{ matrix.python-version == '3.11' }} + run: pdm test + - name: Lint + if: ${{ matrix.python-version == '3.11' }} + run: pdm lint + - name: 'Upload Artifact' + uses: actions/upload-artifact@v4 + with: + name: build-py${{ matrix.python-version }}-${{ matrix.os }} + path: dist + retention-days: 5 + + combine_wheels: + runs-on: ubuntu-latest + needs: build + + steps: + - name: Download wheels artifact + uses: actions/download-artifact@v4 + with: + merge-multiple: 'true' + path: wheels + - name: 'Upload Artifact' + uses: actions/upload-artifact@v4 + with: + name: wheels + path: wheels + retention-days: 5 diff --git a/.gitignore b/.gitignore index 7e9606c..ed6c5a8 100644 --- a/.gitignore +++ b/.gitignore @@ -33,3 +33,6 @@ pip-delete-this-directory.txt # Sphinx documentation docs/_build/ + +# pdm +.pdm-python diff --git a/README.txt b/README.txt deleted file mode 100644 index b4259df..0000000 --- a/README.txt +++ /dev/null @@ -1,46 +0,0 @@ -# lttbc: Largest-Triangle-Three-Buckets (Python using a c implementation) -This is a low-level implementation of the `Largest-Triangle-Three-Buckets` (LTTB) downsampling algorithm written in Python. - -The code has been translated from the work of Sveinn Steinarsson (https://github.com/sveinn-steinarsson/flot-downsample/). - -Known features and requirements: - -- The algorithm requires monotonically increasing x data (finite) -- The algorithm requires finite y data (otherwise problems might occur) -- x and y data have to be of same length (of course) -- The algorithm returns arrays of **dtype** **double** - -## How to use on the field - -The module ``lttbc`` differs in the standard input from other largest triangle three buckets implementations. -The ``downsample`` function takes an input for ``x`` and ``y`` in addition to the ``threshold``: - - import lttbc - import numpy as np - - ARRAY_SIZE = 10000 - THRESHOLD = 1000 - - x = np.arange(ARRAY_SIZE, dtype=np.int32) - y = np.random.randint(1000, size=ARRAY_SIZE, dtype=np.uint64) - - nx, ny = lttbc.downsample(x, y, 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= [ - {name = "Dennis Goeries", email = "dennis.goeries@xfel.eu"}, + { name = "Dennis Goeries", email = "dennis.goeries@xfel.eu" }, ] dependencies = [ "numpy>=1.22", ] -license = {text = "MIT"} +license = { text = "MIT" } classifiers = [ "Development Status :: 5 - Production/Stable", "Environment :: Console", @@ -35,9 +30,23 @@ classifiers = [ "Topic :: Scientific/Engineering :: Physics", "Topic :: Scientific/Engineering :: Visualization", ] +readme = "README.md" + [project.urls] "git" = "https://github.com/dgoeries/lttbc" +[tool.pdm.dev-dependencies] +lint = [ + "flake8", +] +test = ["pytest", "pytest-cov"] + +[tool.pdm.scripts] +test = "pytest tests" +lint = "flake8 src/" + +[tool.pdm] +distribution = true -[tool.setuptools.dynamic] -readme = {file = ["README.txt"], content-type = "text/markdown"} +[tool.pdm.build] +run-setuptools = true # run setup.py for the C Extension diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 61dc1ae..0000000 --- a/requirements.txt +++ /dev/null @@ -1 +0,0 @@ -numpy==1.22 diff --git a/setup.py b/setup.py index 3f9e0a4..102b3ac 100644 --- a/setup.py +++ b/setup.py @@ -15,7 +15,7 @@ def __str__(self): return numpy.get_include() -lttbc_py = Extension("lttbc", sources=["lttbc.c"], +lttbc_py = Extension("lttbc", sources=["src/lttbc/lttbc.c"], define_macros=[ ("NPY_NO_DEPRECATED_API", "NPY_1_7_API_VERSION")], include_dirs=[numpy_get_include(), diff --git a/lttbc.c b/src/lttbc/lttbc.c similarity index 100% rename from lttbc.c rename to src/lttbc/lttbc.c diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/test_downsample.py b/tests/test_downsample.py similarity index 100% rename from test_downsample.py rename to tests/test_downsample.py diff --git a/tox.ini b/tox.ini deleted file mode 100644 index 5a250cc..0000000 --- a/tox.ini +++ /dev/null @@ -1,11 +0,0 @@ -[tox] -envlist = py38,py39,py310,py311 - -[testenv] -deps = - pytest - -requirements.txt 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