diff --git a/scripts/notionClient.test.ts b/scripts/notionClient.test.ts
index 0b0a58f1..e1a86b45 100644
--- a/scripts/notionClient.test.ts
+++ b/scripts/notionClient.test.ts
@@ -38,7 +38,7 @@ vi.mock("chalk", () => ({
 
 describe("notionClient", () => {
   let mockClient: any;
-  let mockN2M: any;
+  let notionToMarkdownInstances: any[];
   let originalEnv: NodeJS.ProcessEnv;
   let consoleMocks: ReturnType<typeof mockConsole>;
 
@@ -71,12 +71,6 @@ describe("notionClient", () => {
       blocks: { children: { list: vi.fn() }, append: vi.fn(), delete: vi.fn() },
     };
 
-    // Create mock NotionToMarkdown
-    mockN2M = {
-      pageToMarkdown: vi.fn(),
-      toMarkdownString: vi.fn(),
-    };
-
     // Set up constructor mocks - create a proper constructor function
     const MockClientClass = vi.fn().mockImplementation(function (
       this: any,
@@ -85,11 +79,39 @@ describe("notionClient", () => {
       return mockClient;
     });
 
+    notionToMarkdownInstances = [];
+
     const MockNotionToMarkdownClass = vi.fn().mockImplementation(function (
       this: any,
       config: any
     ) {
-      return mockN2M;
+      const instance: any = {
+        pageToMarkdown: vi.fn(),
+        toMarkdownString: vi.fn(),
+        customTransformers: {} as Record<string, any>,
+      };
+
+      instance.blockToMarkdown = vi.fn(async function (this: any, block: any) {
+        const transformer = this.customTransformers?.[block.type];
+
+        if (transformer) {
+          throw new Error("paragraph transformer recursion");
+        }
+
+        return `default:${block.id ?? ""}`;
+      });
+
+      instance.setCustomTransformer = vi.fn(function (
+        this: any,
+        type: string,
+        transformer: unknown
+      ) {
+        this.customTransformers[type] = transformer;
+        return this;
+      });
+
+      notionToMarkdownInstances.push(instance);
+      return instance;
     });
 
     // Replace the Client and NotionToMarkdown with our mocks
@@ -176,6 +198,63 @@ describe("notionClient", () => {
       // Assert
       expect(DATABASE_ID).toBe("exported-database-id");
     });
+
+    it("should register a spacer transformer for empty paragraph blocks", async () => {
+      await import("./notionClient");
+
+      expect(notionToMarkdownInstances.length).toBe(1);
+
+      const [primaryN2M] = notionToMarkdownInstances;
+
+      expect(primaryN2M.setCustomTransformer).toHaveBeenCalledWith(
+        "paragraph",
+        expect.any(Function)
+      );
+
+      const transformer = primaryN2M.setCustomTransformer.mock.calls.find(
+        (call: any[]) => call[0] === "paragraph"
+      )?.[1];
+
+      expect(typeof transformer).toBe("function");
+
+      const emptyParagraph = {
+        id: "empty",
+        type: "paragraph",
+        has_children: false,
+        paragraph: {
+          rich_text: [],
+        },
+      } as any;
+
+      const spacerResult = await transformer(emptyParagraph);
+      expect(typeof spacerResult).toBe("string");
+      expect(spacerResult).toContain("notion-spacer");
+      expect(primaryN2M.blockToMarkdown).not.toHaveBeenCalled();
+
+      const populatedParagraph = {
+        id: "content",
+        type: "paragraph",
+        has_children: false,
+        paragraph: {
+          rich_text: [
+            {
+              type: "text",
+              text: { content: "Hello" },
+              plain_text: "Hello",
+            },
+          ],
+        },
+      } as any;
+
+      primaryN2M.blockToMarkdown.mockClear();
+
+      const markdownResult = await transformer(populatedParagraph);
+      expect(primaryN2M.blockToMarkdown).toHaveBeenCalledWith(
+        populatedParagraph
+      );
+      expect(markdownResult).toBe(`default:${populatedParagraph.id}`);
+      expect(primaryN2M.customTransformers.paragraph).toBe(transformer);
+    });
   });
 
   describe("enhancedNotion.databasesQuery", () => {
diff --git a/scripts/notionClient.ts b/scripts/notionClient.ts
index f442b92a..72967d5a 100644
--- a/scripts/notionClient.ts
+++ b/scripts/notionClient.ts
@@ -1,6 +1,10 @@
 import dotenv from "dotenv";
 import { Client } from "@notionhq/client";
 import { NotionToMarkdown } from "notion-to-md";
+import type {
+  BlockObjectResponse,
+  ParagraphBlockObjectResponse,
+} from "@notionhq/client/build/src/api-endpoints";
 import chalk from "chalk";
 import { perfTelemetry } from "./perfTelemetry";
 import {
@@ -8,6 +12,10 @@ import {
   setCircuitBreakerCheck,
 } from "./notion-fetch/requestScheduler";
 
+type MarkdownBlock = Awaited<
+  ReturnType<InstanceType<typeof NotionToMarkdown>["blockToMarkdown"]>
+>;
+
 dotenv.config();
 
 if (!process.env.NOTION_API_KEY) {
@@ -250,6 +258,78 @@ const notion = new Client({
 
 const n2m = new NotionToMarkdown({ notionClient: notion });
 
+type BlockToMarkdown = InstanceType<typeof NotionToMarkdown>["blockToMarkdown"];
+const defaultParagraphToMarkdown = n2m.blockToMarkdown.bind(
+  n2m
+) as BlockToMarkdown;
+
+const NOTION_SPACER_HTML =
+  '<div class="notion-spacer" aria-hidden="true" role="presentation"></div>';
+
+function hasVisibleParagraphContent(
+  block: ParagraphBlockObjectResponse
+): boolean {
+  const richText = block.paragraph?.rich_text;
+  if (!Array.isArray(richText) || richText.length === 0) {
+    return false;
+  }
+
+  return richText.some((item) => {
+    if (item.type === "text") {
+      const content = item.text?.content ?? item.plain_text ?? "";
+      return content.trim().length > 0;
+    }
+
+    if (item.type === "equation") {
+      return (item.equation?.expression ?? "").trim().length > 0;
+    }
+
+    const plainText = item.plain_text ?? "";
+    return plainText.trim().length > 0;
+  });
+}
+
+const paragraphTransformer: BlockToMarkdown = async (block) => {
+  const paragraphBlock = block as ParagraphBlockObjectResponse;
+
+  if (paragraphBlock?.type !== "paragraph") {
+    return defaultParagraphToMarkdown(block as BlockObjectResponse);
+  }
+
+  const hasChildren = paragraphBlock.has_children === true;
+  const hasContent = hasVisibleParagraphContent(paragraphBlock);
+
+  if (!hasChildren && !hasContent) {
+    return NOTION_SPACER_HTML as MarkdownBlock;
+  }
+
+  const customTransformers = (
+    n2m as unknown as {
+      customTransformers?: Record<string, BlockToMarkdown>;
+    }
+  ).customTransformers;
+
+  let previousParagraphTransformer: BlockToMarkdown | undefined;
+
+  if (customTransformers) {
+    previousParagraphTransformer = customTransformers.paragraph;
+
+    if (previousParagraphTransformer) {
+      delete customTransformers.paragraph;
+    }
+  }
+
+  try {
+    return defaultParagraphToMarkdown(paragraphBlock as BlockObjectResponse);
+  } finally {
+    if (customTransformers && previousParagraphTransformer) {
+      customTransformers.paragraph = previousParagraphTransformer;
+    }
+  }
+};
+
+n2m.setCustomTransformer("paragraph", paragraphTransformer);
+
 export const DATABASE_ID = resolvedDatabaseId;
 
 // For v5 API compatibility - export data source ID
diff --git a/scripts/test-utils/mocks.ts b/scripts/test-utils/mocks.ts
index 04394f18..0912c81c 100644
--- a/scripts/test-utils/mocks.ts
+++ b/scripts/test-utils/mocks.ts
@@ -27,6 +27,8 @@ export const createMockNotionClient = () => ({
 export const createMockNotionToMarkdown = () => ({
   pageToMarkdown: vi.fn(),
   toMarkdownString: vi.fn(),
+  setCustomTransformer: vi.fn(),
+  blockToMarkdown: vi.fn(),
 });
 
 /**
diff --git a/src/css/custom.css b/src/css/custom.css
index 4e0ec226..89c1f313 100644
--- a/src/css/custom.css
+++ b/src/css/custom.css
@@ -314,3 +314,21 @@ details {
 [data-theme="dark"] details {
   background-color: rgba(229, 228, 226, 0.15) !important;
 }
+
+/* Preserve intentional gaps from Notion empty paragraph spacers */
+:root {
+  --notion-paragraph-gap-base: var(--ifm-paragraph-margin-bottom, 1.25rem);
+  --notion-spacer-gap: clamp(
+    calc(var(--notion-paragraph-gap-base) * 0.55),
+    calc(var(--notion-paragraph-gap-base) * 0.65 + 0.2rem),
+    calc(var(--notion-paragraph-gap-base) * 0.75 + 0.25rem)
+  );
+}
+
+.notion-spacer {
+  display: block;
+  width: 100%;
+  height: var(--notion-spacer-gap);
+  margin: 0;
+  pointer-events: none;
+}