From 2fae11ff661be8ddec03eeac63115b79be6fd136 Mon Sep 17 00:00:00 2001 From: Vijay Ivaturi Date: Thu, 4 May 2017 11:02:10 +0530 Subject: [PATCH 1/4] added vignettes for theoph and sd-iv_pkpd --- .gitignore | 3 +- DESCRIPTION | 3 +- vignettes/sd_iv_rich_pkpd.Rmd | 90 +++++++++++++++++++++++++++++++++++ vignettes/theophylline.Rmd | 80 +++++++++++++++++++++++++++++++ 4 files changed, 174 insertions(+), 2 deletions(-) create mode 100644 vignettes/sd_iv_rich_pkpd.Rmd create mode 100644 vignettes/theophylline.Rmd diff --git a/.gitignore b/.gitignore index ef85063..5ca3a76 100644 --- a/.gitignore +++ b/.gitignore @@ -2,4 +2,5 @@ .Rhistory .RData .sublime-project -.sublime-workspace \ No newline at end of file +.sublime-workspace +inst/doc diff --git a/DESCRIPTION b/DESCRIPTION index 108bba5..91ca57f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -6,7 +6,8 @@ Date: 2014-01-01 Authors@R: c(person("Devin", "Pastoor", role = c("aut", "cre"), email = "devin.pastoor@gmail.com")) Suggests: - knitr + knitr, + rmarkdown VignetteBuilder: knitr Description: ctm-datasets provides a number of simulated datasets to provide pharmacokinetic, pharmacodynamic, and demographic data to allow for easy diff --git a/vignettes/sd_iv_rich_pkpd.Rmd b/vignettes/sd_iv_rich_pkpd.Rmd new file mode 100644 index 0000000..6f4c236 --- /dev/null +++ b/vignettes/sd_iv_rich_pkpd.Rmd @@ -0,0 +1,90 @@ +--- +title: "Single Dose IV - PKPD" +author: "Vignette Author" +date: "`r Sys.Date()`" +output: rmarkdown::html_vignette +vignette: > + %\VignetteIndexEntry{Single Dose IV - PKPD} + %\VignetteEngine{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r echo=FALSE} +library(DiagrammeR) +``` + +## Single Dose IV - PKPD + +A dataset containing simulated PKPD data. A single IV bolus dose was given and rich pharmacokinetic and pharmacodynamic measurements were taken. Demographic data of Age, Weight, Gender, and Race were collected. + +This data was simulated from a one-compartment model with first-order and elimination after a IV bolus dose. The table below shows the parameters used to simulate the dataset - + +```{r echo=FALSE} +data.frame( + Parameter = c("CL (L/hr)", "V (L)", "Residual error: Proportional", + "Emax", "EC50 (mg/L)", "Residual Error on Effect"), + Mean = c(1, 10, 0, 10, 2, 0), + Variance..BSV. = c("0.16 (40%)", "0.09 (30%)", "10%", "sd = 1.4 units", + "0.09 (30%)", "sd = 0.5 units") +) %>% knitr::kable() +``` + +```{r echo=FALSE} +mermaid(" +graph LR +A((Central))--CL-->B[Out] +A-->D[Effect] +") +``` + +Notes - + +1. $Dose$ (units - milligram) is given at time $t = 0$ directly into the $Central$ compartment +2. $Central$ compartment is the observation compartment where concentrations of the drug $C_p(t)$ are measured (units - microgram/Liter). +3. Volume of distribution parameter $V$ (units = Liter) is a proportionality constant that scales the amount of drug in the $Central$ compartment (mg) to the observed concentration (mg/L) - $Concentration = Dose/V$ +The population values of $V$, $TVV$ is allometrically scaled as follows: +$$ V = TVV \times (\frac{WEIGHT}{70})^1 $$ +4. $CL$ (units - Liter/time) is the parameter that relates the rate of elimination (units - milligram/time) to the measured concentration. +$$ Rate of Elimination = CL \times C_p $$ + +$CL$ can also be derived from $k$, $V$ where, +$$ CL = k \times V$$ + +The population values of $CL$, $TVCL$ is allometrically scaled as follows: +$$ CL = TVCL \times (\frac{WEIGHT}{70})^{0.75} $$ + +7. $Out$ is collection compartment without any exit rates. Such a compartment can be use to accumulate drug over time and is commonly referred to as area under the curve or $AUC$. +$$ AUC = \int\limits_0^\infty C_p\, \mathrm{d}t$$ +8. $Effect$ here represents the equation that relates the concentration, $C_p$ to the pharmacodynamic endpoint. + +$$ Effect = \frac{Emax\times C_p(t)}{EC_{50} + C_p(t)} $$ + +#### ODE + +$$ +\begin{array}{lcl} \frac{ dCentral }{ dt } & = &- \frac{CL}{V}\times t \\ \end{array} +$$ + +## Data Structure + +The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) with direct PD effect (Emax model). + +1. ID. Numerical ID (1-100) + +2. TIME Time in hours (0-12) + +3. COBS. Plasma concentration in ug/L + +4. EOBS. + +5. WEIGHT. Weight in kg + +6. AGE. Age in years + +7. DOSE. Three dose levels: 1, 10, and 100 mg + +8. SEX. Male or Female gender identification + +9. RACE. AfricanAmerican, Caucasian, Others, and Asian races + +10. AMT. Amount of drug given, time dependent, in milligrams \ No newline at end of file diff --git a/vignettes/theophylline.Rmd b/vignettes/theophylline.Rmd new file mode 100644 index 0000000..fbf6407 --- /dev/null +++ b/vignettes/theophylline.Rmd @@ -0,0 +1,80 @@ +--- +title: "Theophylline dataset" +date: "`r Sys.Date()`" +output: rmarkdown::html_vignette +vignette: > + %\VignetteIndexEntry{Theophylline dataset} + %\VignetteEngine{knitr::rmarkdown} + %\VignetteEncoding{UTF-8} +--- + +```{r echo=FALSE} +library(DiagrammeR) +``` + +## Theophylline + +The data in Theoph.csv came from a study of the kinetics of the anti-asthmatic +agent theophylline reported by Boeckmann et al. (1992). In this experiment, +the drug was administered orally to twelve subjects, and serum +concentrations were measured at ten time points per subject over the subsequent +25 hours. + +The common model for the kinetics of theophylline following oral administration is +a one-compartment model with first-order absorption and elimination. In this +model, the subject-specific pharmacokinetic parameters to be estimated are - + +* the absorption rate constant, $ka$, +* the volume of distribution, $V$, and +* the elimination rate constant, $k$. + +```{r echo=FALSE} +mermaid(" + graph LR +Depot --ka --> Central((Central)) +Central((Central)) -- k --> Out + ") +``` + +Notes - + +1. $Dose$ (units - milligram) is given at time $t = 0$ into the $Depot$ compartment - represents the gut +2. The $Dose$ moves from the $Depot$ compartment to the $Central$ compartment with a first-order absorption rate constant $ka$ +3. $Central$ compartment is the observation compartment where concentrations of the drug $C_p(t)$ are measured (units - milligram/Liter). +4. Volume of distribution parameter $V$ (units = Liter) is a proportionality constant that scales the amount of drug in the $Central$ compartment (mg) to the observed concentration (mg/L) - $Concentration = Dose/V$ +5. $k$ (units - 1/time) is the parameter that describes the elimination rate constant of the drug from the $Central$ compartment +6. $CL$ (units - Liter/time) is useful parameter that relates the rate of elimination (units - milligram/time) to the measured concentration. +$$ Rate of Elimination = CL \times C_p $$ + +$CL$ can also be derived from $k$, $V$ where, +$$ CL = k \times V$$ + +7. $Out$ is collection compartment without any exit rates. Such a compartment can be use to accumulate drug over time and is commonly referred to as area under the curve or $AUC$. +$$ AUC = \int\limits_0^\infty C_p\, \mathrm{d}t$$ + +#### Analytical Solution + +$$C_p(t) = \frac{ Dose }{ V }\frac{ ka }{ ka - k }(e^{-k(t-t_D)} - e^{-ka(t-t_D)}) $$ + +#### ODE + +$$ +\begin{array}{lcl} \frac{ dDepot }{ dt } & = & -ka\times Depot \\ \frac{ dCentral }{ dt } & = & ka\times Depot - k\times t \end{array} +$$ + +## Data Structure + +1. Subject +an ordered factor with levels 1, ..., 12 identifying the subject on whom the observation was made. The ordering is by increasing maximum concentration of theophylline observed. + +2. Wt +weight of the subject (kg). + +3. Dose +dose of theophylline administered orally to the subject (mg/kg). + +4. Time +time since drug administration when the sample was drawn (hr). + +5. conc +theophylline concentration in the sample (mg/L). \ No newline at end of file From deb39a43b0e774d37d76aacd67a482a366948db4 Mon Sep 17 00:00:00 2001 From: Devin Pastoor Date: Thu, 4 May 2017 17:13:20 -0400 Subject: [PATCH 2/4] add placeholder readme --- README.Rmd | 3 +++ 1 file changed, 3 insertions(+) create mode 100644 README.Rmd diff --git a/README.Rmd b/README.Rmd new file mode 100644 index 0000000..fc754b0 --- /dev/null +++ b/README.Rmd @@ -0,0 +1,3 @@ +# README + +datasets for PKPD style usage From abc25712b2a2e019c697eaf5f3b2b691c939d2d1 Mon Sep 17 00:00:00 2001 From: Devin Pastoor Date: Thu, 4 May 2017 17:14:40 -0400 Subject: [PATCH 3/4] roxygenize --- DESCRIPTION | 1 + NAMESPACE | 2 +- man/PKPDdatasets.Rd | 3 +-- man/aht_trial1.Rd | 5 ++--- man/aht_trial2.Rd | 23 +++++++++++------------ man/dapa_IV_oral.Rd | 3 +-- man/list_datasets.Rd | 3 +-- man/pain_relief.Rd | 19 +++++++++---------- man/print_datasets.Rd | 3 +-- man/sd_iv_rich_pkpd.Rd | 10 +++++----- man/sd_oral_richpk.Rd | 7 +++---- 11 files changed, 36 insertions(+), 43 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 91ca57f..0d4dcf4 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -17,3 +17,4 @@ Description: ctm-datasets provides a number of simulated datasets to provide examples in pharmacometrics. LazyData: TRUE License: MIT +RoxygenNote: 6.0.1 diff --git a/NAMESPACE b/NAMESPACE index d03037d..df303c1 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,4 +1,4 @@ -# Generated by roxygen2 (4.1.0): do not edit by hand +# Generated by roxygen2: do not edit by hand export(list_datasets) export(print_datasets) diff --git a/man/PKPDdatasets.Rd b/man/PKPDdatasets.Rd index 73015a6..f7ca7b1 100644 --- a/man/PKPDdatasets.Rd +++ b/man/PKPDdatasets.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PKPDdatasets.R \docType{package} \name{PKPDdatasets} @@ -8,4 +8,3 @@ \description{ PKPDdatasets } - diff --git a/man/aht_trial1.Rd b/man/aht_trial1.Rd index ec0bc38..6c75e5e 100644 --- a/man/aht_trial1.Rd +++ b/man/aht_trial1.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/continuous_datasets.R \docType{data} \name{aht_trial1} @@ -9,7 +9,7 @@ data(aht_trial1) } \description{ -A dataset containing dose, plasma concentration and time data, as well as +A dataset containing dose, plasma concentration and time data, as well as demographic data of Age, Weight, Gender, and Race for each individual } \details{ @@ -26,4 +26,3 @@ A dataset containing dose, plasma concentration and time data, as well as } } \keyword{datasets} - diff --git a/man/aht_trial2.Rd b/man/aht_trial2.Rd index 88422bd..2cfe540 100644 --- a/man/aht_trial2.Rd +++ b/man/aht_trial2.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/ahttrial_II.R \docType{data} \name{aht_trial2} @@ -9,27 +9,26 @@ data(aht_trial2) } \description{ -AHT trial data set: Randomized, placebo controlled, Double-blind, parallel study; -Subjects randomized to Placebo and AHT in the ratio 1:1; Dose of AHT studied : 5mg -Primary endpoint: Change from baseline blood pressure (systolic and diastolic) measured at 8 weeks. -Details of the Data Column: ID=Subject ID, Age: Age(years), Weight : Weight(Kg), SCreatinine: Serum Creatinine(mg/dl), -SerumALT: Serum Alanine aminotransferase(IU/L), DelDBP: Change from baseline diastolic blood pressure(mm Hg), +AHT trial data set: Randomized, placebo controlled, Double-blind, parallel study; +Subjects randomized to Placebo and AHT in the ratio 1:1; Dose of AHT studied : 5mg +Primary endpoint: Change from baseline blood pressure (systolic and diastolic) measured at 8 weeks. +Details of the Data Column: ID=Subject ID, Age: Age(years), Weight : Weight(Kg), SCreatinine: Serum Creatinine(mg/dl), +SerumALT: Serum Alanine aminotransferase(IU/L), DelDBP: Change from baseline diastolic blood pressure(mm Hg), DELSBP: Change from baseline systolic blood pressure (mm Hg), TRT: Treatment, Dose: Dose (microgram,µg) } \details{ \itemize{ \item ID. Numerical ID (1--100) - \item AGE. Age in Years + \item AGE. Age in Years \item WEIGHT Weight in Kg \item SCREATININE. Serum creatinine in mg/dl \item SERUMALT. Serum Alanine Aminotransferase in IU/L \item GENDER. Male or Female gender identification \item RACE. Ethnicity - \item DELDBP. Change from baseline in Diastolic blood pressure, mmHg - \item DELSBP. Change from baseline in Systolic blood pressure, mmHg - \item TRT. Treatment indicator: Placebo and AHT group - \item DOSE. Dose of AHT in ug + \item DELDBP. Change from baseline in Diastolic blood pressure, mmHg + \item DELSBP. Change from baseline in Systolic blood pressure, mmHg + \item TRT. Treatment indicator: Placebo and AHT group + \item DOSE. Dose of AHT in ug } } \keyword{datasets} - diff --git a/man/dapa_IV_oral.Rd b/man/dapa_IV_oral.Rd index 557f274..06a3fdd 100644 --- a/man/dapa_IV_oral.Rd +++ b/man/dapa_IV_oral.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PKPDdatasets.R \docType{data} \name{dapa_IV_oral} @@ -25,4 +25,3 @@ A dataset containing simulated dapagliflozin PK. A single IV dose followed by 3 } } \keyword{datasets} - diff --git a/man/list_datasets.Rd b/man/list_datasets.Rd index 455249b..4e9cd73 100644 --- a/man/list_datasets.Rd +++ b/man/list_datasets.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/print_datasets.R \name{list_datasets} \alias{list_datasets} @@ -12,4 +12,3 @@ List datasets available in PKPDdatasets package \examples{ list_datasets() } - diff --git a/man/pain_relief.Rd b/man/pain_relief.Rd index f257457..4cd84f1 100644 --- a/man/pain_relief.Rd +++ b/man/pain_relief.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/categorical_datasets.R \docType{data} \name{pain_relief} @@ -9,20 +9,20 @@ data(pain_relief) } \description{ -CTM_Nopain is a novel anti-inflammatory agent under preliminary investigation. -A dose-ranging trial was conducted comparing placebo with 3 doses of CTM_Nopain (5mg, 20mg and 80 mg QD). -The maximum tolerated dose is 160 mg per day. -Plasma concentrations (mg/L) of the drug were measured at 0, 0.5, 1, 1.5, 2, 2.5, 3-8 hours. -Pain score (0=no pain, 1=mild, 2=moderate, 3=severe) were obtained at time points when plasma concentration was collected. -A pain score of 2 or more is considered as no pain relief. -The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) +CTM_Nopain is a novel anti-inflammatory agent under preliminary investigation. +A dose-ranging trial was conducted comparing placebo with 3 doses of CTM_Nopain (5mg, 20mg and 80 mg QD). +The maximum tolerated dose is 160 mg per day. +Plasma concentrations (mg/L) of the drug were measured at 0, 0.5, 1, 1.5, 2, 2.5, 3-8 hours. +Pain score (0=no pain, 1=mild, 2=moderate, 3=severe) were obtained at time points when plasma concentration was collected. +A pain score of 2 or more is considered as no pain relief. +The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) with direct PD effect (Emax model). } \details{ \itemize{ \item ARM Factor with 4 levels \item ID. Numerical ID (1-160) - \item TIME Time in hours + \item TIME Time in hours \item CONC Concentration (mg/L) \item PAINRELIEF 0 (no relief) or 1 (relief) \item PAINSCORE categorical pain score @@ -30,4 +30,3 @@ with direct PD effect (Emax model). } } \keyword{datasets} - diff --git a/man/print_datasets.Rd b/man/print_datasets.Rd index 51f1fbc..fc06c95 100644 --- a/man/print_datasets.Rd +++ b/man/print_datasets.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/print_datasets.R \name{print_datasets} \alias{print_datasets} @@ -12,4 +12,3 @@ Print datasets available in PKPDdatasets package \examples{ print_datasets() } - diff --git a/man/sd_iv_rich_pkpd.Rd b/man/sd_iv_rich_pkpd.Rd index 78dd27b..cfc33be 100644 --- a/man/sd_iv_rich_pkpd.Rd +++ b/man/sd_iv_rich_pkpd.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PKPDdatasets.R \docType{data} \name{sd_iv_rich_pkpd} @@ -13,14 +13,14 @@ A dataset containing simulated PKPD data. A single IV bolus dose was given and r and pharmacodynamic measurements were taken. Demographic data of Age, Weight, Gender, and Race were collected. } \details{ -The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) +The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) with direct PD effect (Emax model). \itemize{ \item ID. Numerical ID (1-100) \item TIME Time in hours (0-12) - \item COBS. Plasma concentration in - \item EOBS. + \item COBS. Plasma concentration in + \item EOBS. \item WEIGHT. Weight in kg \item AGE. Age in years \item DOSE. Three dose levels: 1, 10, and 100 mg @@ -29,6 +29,7 @@ with direct PD effect (Emax model). \item AMT. Amount of drug given, time dependent, in milligrams } + Parameters used to simulate data: \tabular{lcr}{ Parameter \tab Mean \tab Variance (BSV)\cr @@ -41,4 +42,3 @@ Residual Error on Effect \tab 0 \tab sd = 0.5 units } } \keyword{datasets} - diff --git a/man/sd_oral_richpk.Rd b/man/sd_oral_richpk.Rd index 59a3c1a..0a45601 100644 --- a/man/sd_oral_richpk.Rd +++ b/man/sd_oral_richpk.Rd @@ -1,4 +1,4 @@ -% Generated by roxygen2 (4.1.0): do not edit by hand +% Generated by roxygen2: do not edit by hand % Please edit documentation in R/PKPDdatasets.R \docType{data} \name{sd_oral_richpk} @@ -9,7 +9,7 @@ data(sd_oral_richpk) } \description{ -A dataset containing dose, plasma concentration and time data, as well as +A dataset containing dose, plasma concentration and time data, as well as demographic data of Age, Weight, Gender, and Race for each individual } \details{ @@ -20,10 +20,9 @@ A dataset containing dose, plasma concentration and time data, as well as \item Conc. Plasma concentration in mg/L \item Age. Age in years \item Weight. Weight in kg - \item Gender. Male or Female gender identification + \item Gender. Male or Female gender identification \item Race. Ethnicity \item Dose. Dose given to each individual in milligrams } } \keyword{datasets} - From 996f366c1ba6b543529beba468c361592cb21b76 Mon Sep 17 00:00:00 2001 From: Devin Pastoor Date: Thu, 4 May 2017 17:19:14 -0400 Subject: [PATCH 4/4] add docs --- docs/articles/index.html | 100 ++ docs/articles/sd_iv_rich_pkpd.html | 182 +++ .../DiagrammeR-binding-0.9.0/DiagrammeR.js | 190 +++ .../DiagrammeR-styles-0.2/styles.css | 14 + .../chromatography-0.1/LICENSE | 22 + .../chromatography-0.1/chromatography.js | 1105 +++++++++++++++++ .../sd_iv_rich_pkpd_files/d3-3.3.8/LICENSE | 26 + .../sd_iv_rich_pkpd_files/d3-3.3.8/d3.min.js | 5 + .../sd_iv_rich_pkpd_files/dagre-0.4.0/LICENSE | 19 + .../dagre-0.4.0/dagre-d3.min.js | 27 + .../htmlwidgets-0.8/htmlwidgets.js | 836 +++++++++++++ .../mermaid-0.3.0/LICENSE | 22 + .../mermaid-0.3.0/dist/mermaid.css | 275 ++++ .../mermaid-0.3.0/dist/mermaid.slim.min.js | 12 + docs/articles/theophylline.html | 145 +++ .../DiagrammeR-binding-0.9.0/DiagrammeR.js | 190 +++ 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+ + + diff --git a/docs/articles/sd_iv_rich_pkpd.html b/docs/articles/sd_iv_rich_pkpd.html new file mode 100644 index 0000000..ee9343f --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd.html @@ -0,0 +1,182 @@ + + + + + + + +Single Dose IV - PKPD • PKPDdatasets + + + + + + +
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Single Dose IV - PKPD

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Vignette Author

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2017-05-04

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## Warning: package 'DiagrammeR' was built under R version 3.3.3
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+ Single Dose IV - PKPD

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A dataset containing simulated PKPD data. A single IV bolus dose was given and rich pharmacokinetic and pharmacodynamic measurements were taken. Demographic data of Age, Weight, Gender, and Race were collected.

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This data was simulated from a one-compartment model with first-order and elimination after a IV bolus dose. The table below shows the parameters used to simulate the dataset -

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ParameterMeanVariance..BSV.
CL (L/hr)10.16 (40%)
V (L)100.09 (30%)
Residual error: Proportional010%
Emax10sd = 1.4 units
EC50 (mg/L)20.09 (30%)
Residual Error on Effect0sd = 0.5 units
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Notes -

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  1. +\(Dose\) (units - milligram) is given at time \(t = 0\) directly into the \(Central\) compartment
    2. +
  2. +\(Central\) compartment is the observation compartment where concentrations of the drug \(C_p(t)\) are measured (units - microgram/Liter).
    3. +
  3. Volume of distribution parameter \(V\) (units = Liter) is a proportionality constant that scales the amount of drug in the \(Central\) compartment (mg) to the observed concentration (mg/L) - \(Concentration = Dose/V\) The population values of \(V\), \(TVV\) is allometrically scaled as follows: \[ V = TVV \times (\frac{WEIGHT}{70})^1 \] +
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  4. +\(CL\) (units - Liter/time) is the parameter that relates the rate of elimination (units - milligram/time) to the measured concentration. \[ Rate of Elimination = CL \times C_p \] +
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\(CL\) can also be derived from \(k\), \(V\) where, \[ CL = k \times V\]

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The population values of \(CL\), \(TVCL\) is allometrically scaled as follows: \[ CL = TVCL \times (\frac{WEIGHT}{70})^{0.75} \]

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  1. +\(Out\) is collection compartment without any exit rates. Such a compartment can be use to accumulate drug over time and is commonly referred to as area under the curve or \(AUC\).
    \[ AUC = \int\limits_0^\infty C_p\, \mathrm{d}t\] +
    2. +
  2. +\(Effect\) here represents the equation that relates the concentration, \(C_p\) to the pharmacodynamic endpoint.
    3. +
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\[ Effect = \frac{Emax\times C_p(t)}{EC_{50} + C_p(t)} \]

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+ ODE

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\[ +\begin{array}{lcl} \frac{ dCentral }{ dt } & = &- \frac{CL}{V}\times t \\ \end{array} +\]

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+ Data Structure

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The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) with direct PD effect (Emax model).

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  1. ID. Numerical ID (1-100)

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  2. TIME Time in hours (0-12)

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  3. COBS. Plasma concentration in ug/L

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  4. EOBS.

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  5. WEIGHT. Weight in kg

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  6. AGE. Age in years

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  7. DOSE. Three dose levels: 1, 10, and 100 mg

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  8. SEX. Male or Female gender identification

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  9. RACE. AfricanAmerican, Caucasian, Others, and Asian races

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  10. AMT. Amount of drug given, time dependent, in milligrams

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Developed by Devin Pastoor.

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Site built with pkgdown.

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+ + + diff --git a/docs/articles/sd_iv_rich_pkpd_files/DiagrammeR-binding-0.9.0/DiagrammeR.js b/docs/articles/sd_iv_rich_pkpd_files/DiagrammeR-binding-0.9.0/DiagrammeR.js new file mode 100644 index 0000000..eb3abc5 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/DiagrammeR-binding-0.9.0/DiagrammeR.js @@ -0,0 +1,190 @@ +HTMLWidgets.widget({ + + name: 'DiagrammeR', + + type: 'output', + + initialize: function(el, width, height) { + + /* wait to initialize until renderValue + since x not provided until then + and mermaid will try to build the diagram + as soon as class of the div is set to "mermaid" + */ + + /* to prevent auto init() by mermaid + not documented but + see lines https://github.com/knsv/mermaid/blob/master/src/main.js#L100-L109 + mermaid_config in global with mermaid_config.startOnLoad = false + appears to turn off the auto init behavior + allowing us to callback after manually init and then callback + after complete + */ + window.mermaid.startOnLoad = false; + + // set config options for Gantt + // undocumented but these can be provided + // so from R + // m1 <- mermaid(spec) + // m1$x$config = list(ganttConfig = list( barHeight = 100 ) ) + mermaid.ganttConfig = { + titleTopMargin:25, + barHeight:20, + barGap:4, + topPadding:50, + sidePadding:100, + gridLineStartPadding:35, + fontSize:11, + numberSectionStyles:4, + axisFormatter: [ + // Within a day + ["%I:%M", function (d) { + return d.getHours(); + }], + // Monday a week + ["w. %U", function (d) { + return d.getDay() == 1; + }], + // Day within a week (not monday) + ["%a %d", function (d) { + return d.getDay() && d.getDate() != 1; + }], + // within a month + ["%b %d", function (d) { + return d.getDate() != 1; + }], + // Month + ["%m-%y", function (d) { + return d.getMonth(); + }] + ] + }; + + return { + // TODO: add instance fields as required + } + + }, + + renderValue: function(el, x, instance) { + + // if no diagram provided then assume + // that the diagrams are provided through htmltools tags + // and DiagrammeR was just used for dependencies + if ( x.diagram != "" ) { + el.innerHTML = x.diagram; + //if dynamic such as shiny remove data-processed + // so mermaid will reprocess and redraw + el.removeAttribute("data-processed"); + el.classList.add('mermaid'); + //make sure if shiny that we turn display back on + el.style.display = ""; + //again if dynamic such as shiny + // explicitly run mermaid.init() + } else { + // set display to none + // should we remove instead?? + el.style.display = "none"; + } + + // check for undocumented ganttConfig + // to override the defaults manually entered + // in initialize above + // note this is really sloppy and will not + // work well if multiple gantt charts + // with custom configs here + if( typeof x.config !== "undefined" && + typeof x.config.ganttConfig !== "undefined" ){ + Object.keys(x.config.ganttConfig).map(function(k){ + window.mermaid.ganttConfig[k] = x.config.ganttConfig[k]; + }) + } + + + // use this to sort of make our diagram responsive + // or at a minimum fit within the bounds set by htmlwidgets + // for the parent container + function makeResponsive(el){ + var svg = el.getElementsByTagName("svg")[0]; + if(svg){ + if(svg.width) {svg.removeAttribute("width")}; + if(svg.height) {svg.removeAttribute("height")}; + svg.style.width = "100%"; + svg.style.height = "100%"; + } + }; + + + // get all DiagrammeR mermaids widgets + dg = document.getElementsByClassName("DiagrammeR"); + // run mermaid.init + // but use try catch block + // to send error to the htmlwidget for display + try{ + mermaid.init( el ); + + // sort of make our diagram responsive + // should we make this an option? + // if so, then could easily add to list of post process tasks + makeResponsive( el ); + + /* + // change the id of our SVG assigned by mermaid to prevent conflict + // mermaid.init has a counter that will reset to 0 + // and cause duplication of SVG id if multiple + d3.select(el).select("svg") + .attr("id", "mermaidChart-" + el.id); + // now we have to change the styling assigned by mermaid + // to point to our new id that we have assigned + // will add if since sequence diagrams do not have stylesheet + if(d3.select(el).select("svg").select("style")[0][0]){ + d3.select(el).select("svg").select("style")[0][0].innerHTML = d3.select(el).select("svg") + .select("style")[0][0].innerHTML + */ + /// sep comment for / in regex .replace(/mermaidChart[0-9]*/gi, "mermaidChart-" + el.id); + /*} + */ + + // set up a container for tasks to perform after completion + // one example would be add callbacks for event handling + // styling + if (!(typeof x.tasks === "undefined") ){ + if ( (typeof x.tasks.length === "undefined") || + (typeof x.tasks === "function" ) ) { + // handle a function not enclosed in array + // should be able to remove once using jsonlite + x.tasks = [x.tasks]; + } + x.tasks.map(function(t){ + // for each tasks add it to the mermaid.tasks with el + t.call(el); + }) + } + + } catch(e) { + // if error look for last processed DiagrammeR + // and send error to the container div + // with pre containing the errors + var processedDg = d3.selectAll(".DiagrammeR[data-processed=true]"); + // select the last + processedDg = d3.select(processedDg[0][processedDg[0].length - 1]) + // remove the svg + processedDg.select("svg").remove(); + + //if dynamic such as shiny remove data-processed + // so mermaid will reprocess and redraw + if (HTMLWidgets.shinyMode) { + el.removeAttribute("data-processed") + } + + processedDg.append("pre").html( ["parse error with " + x.diagram, e.message].join("\n") ) + } + + }, + + resize: function(el, width, height, instance) { + + } + + +}); diff --git a/docs/articles/sd_iv_rich_pkpd_files/DiagrammeR-styles-0.2/styles.css b/docs/articles/sd_iv_rich_pkpd_files/DiagrammeR-styles-0.2/styles.css new file mode 100644 index 0000000..d6446ab --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/DiagrammeR-styles-0.2/styles.css @@ -0,0 +1,14 @@ +.DiagrammeR,.grViz pre { + white-space: pre-wrap; /* CSS 3 */ + white-space: -moz-pre-wrap; /* Mozilla, since 1999 */ + white-space: -pre-wrap; /* Opera 4-6 */ + white-space: -o-pre-wrap; /* Opera 7 */ + word-wrap: break-word; /* Internet Explorer 5.5+ */ +} + +.DiagrammeR g .label { + font-family: Helvetica; + font-size: 14px; + color: #333333; +} + diff --git a/docs/articles/sd_iv_rich_pkpd_files/chromatography-0.1/LICENSE b/docs/articles/sd_iv_rich_pkpd_files/chromatography-0.1/LICENSE new file mode 100644 index 0000000..ea86fbd --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/chromatography-0.1/LICENSE @@ -0,0 +1,22 @@ +The MIT License (MIT) + +Copyright (c) 2015 We Are Visualizers + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + diff --git a/docs/articles/sd_iv_rich_pkpd_files/chromatography-0.1/chromatography.js b/docs/articles/sd_iv_rich_pkpd_files/chromatography-0.1/chromatography.js new file mode 100644 index 0000000..bd25546 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/chromatography-0.1/chromatography.js @@ -0,0 +1,1105 @@ +(function () { + + var Categories, Color, ColorScale, chromato, CSSColors, Ramp, root, type, _ref, _ref2, _ref3; + var __hasProp = Object.prototype.hasOwnProperty, __extends = function(child, parent) { for (var key in parent) { if (__hasProp.call(parent, key)) child[key] = parent[key]; } function ctor() { this.constructor = child; } ctor.prototype = parent.prototype; child.prototype = new ctor; child.__super__ = parent.prototype; return child; }; + + root = typeof exports !== 'undefined' && exports !== null ? exports : this; + + chromato = (_ref = root.chromato) != null ? _ref : root.chromato = {}; + + if (typeof module !== 'undefined' && module !== null) module.exports = chromato; + + Color = (function() { + function Color(x, y, z, m) { + var me, _ref2; + me = this; + if (!(x != null) && !(y != null) && !(z != null) && !(m != null)) { + x = [255, 0, 255]; + } + if (type(x) === 'array' && x.length === 3) { + if (m == null) m = y; + _ref2 = x, x = _ref2[0], y = _ref2[1], z = _ref2[2]; + } + if (type(x) === 'string') { + m = 'hex'; + } else { + if (m == null) m = 'rgb'; + } + if (m === 'rgb') { + me.rgb = [x, y, z]; + } else if (m === 'hsl') { + me.rgb = Color.hsl2rgb(x, y, z); + } else if (m === 'hsv') { + me.rgb = Color.hsv2rgb(x, y, z); + } else if (m === 'hex') { + me.rgb = Color.hex2rgb(x); + } else if (m === 'lab') { + me.rgb = Color.lab2rgb(x, y, z); + } else if (m === 'hcl') { + me.rgb = Color.hcl2rgb(x, y, z); + } else if (m === 'hsi') { + me.rgb = Color.hsi2rgb(x, y, z); + } + } + + Color.prototype.hex = function() { + return Color.rgb2hex(this.rgb); + }; + + Color.prototype.toString = function() { + return this.hex(); + }; + + Color.prototype.hsl = function() { + return Color.rgb2hsl(this.rgb); + }; + + Color.prototype.hsv = function() { + return Color.rgb2hsv(this.rgb); + }; + + Color.prototype.lab = function() { + return Color.rgb2lab(this.rgb); + }; + + Color.prototype.hcl = function() { + return Color.rgb2hcl(this.rgb); + }; + + Color.prototype.hsi = function() { + return Color.rgb2hsi(this.rgb); + }; + + Color.prototype.interpolate = function(f, col, m) { + var dh, hue, hue0, hue1, lbv, lbv0, lbv1, me, sat, sat0, sat1, xyz0, xyz1; + me = this; + if (m == null) m = 'rgb'; + if (type(col) === 'string') col = new Color(col); + if (m === 'hsl' || m === 'hsv' || m === 'hcl' || m === 'hsi') { + if (m === 'hsl') { + xyz0 = me.hsl(); + xyz1 = col.hsl(); + } else if (m === 'hsv') { + xyz0 = me.hsv(); + xyz1 = col.hsv(); + } else if (m === 'hcl') { + xyz0 = me.hcl(); + xyz1 = col.hcl(); + } else if (m === 'hsi') { + xyz0 = me.hsi(); + xyz1 = col.hsi(); + } + hue0 = xyz0[0], sat0 = xyz0[1], lbv0 = xyz0[2]; + hue1 = xyz1[0], sat1 = xyz1[1], lbv1 = xyz1[2]; + if (!isNaN(hue0) && !isNaN(hue1)) { + if (hue1 > hue0 && hue1 - hue0 > 180) { + dh = hue1 - (hue0 + 360); + } else if (hue1 < hue0 && hue0 - hue1 > 180) { + dh = hue1 + 360 - hue0; + } else { + dh = hue1 - hue0; + } + hue = hue0 + f * dh; + } else if (!isNaN(hue0)) { + hue = hue0; + if (lbv1 === 1 || lbv1 === 0) sat = sat0; + } else if (!isNaN(hue1)) { + hue = hue1; + if (lbv0 === 1 || lbv0 === 0) sat = sat1; + } else { + hue = void 0; + } + if (sat == null) sat = sat0 + f * (sat1 - sat0); + lbv = lbv0 + f * (lbv1 - lbv0); + return new Color(hue, sat, lbv, m); + } else if (m === 'rgb') { + xyz0 = me.rgb; + xyz1 = col.rgb; + return new Color(xyz0[0] + f * (xyz1[0] - xyz0[0]), xyz0[1] + f * (xyz1[1] - xyz0[1]), xyz0[2] + f * (xyz1[2] - xyz0[2]), m); + } else if (m === 'lab') { + xyz0 = me.lab(); + xyz1 = col.lab(); + return new Color(xyz0[0] + f * (xyz1[0] - xyz0[0]), xyz0[1] + f * (xyz1[1] - xyz0[1]), xyz0[2] + f * (xyz1[2] - xyz0[2]), m); + } else { + throw m + ' is not supported as a color mode'; + } + }; + return Color; + })(); + + Color.hex2rgb = function(hex) { + var b, g, r, u; + if (!hex.match(/^#?([A-Fa-f0-9]{6}|[A-Fa-f0-9]{3})$/)) { + if ((chromato.colors != null) && chromato.colors[hex]) { + hex = chromato.colors[hex]; + } else { + throw 'This color format is unknown: ' + hex; + } + } + if (hex.length === 4 || hex.length === 7) hex = hex.substr(1); + if (hex.length === 3) { + hex = hex[0] + hex[0] + hex[1] + hex[1] + hex[2] + hex[2]; + } + u = parseInt(hex, 16); + r = u >> 16; + g = u >> 8 & 0xFF; + b = u & 0xFF; + return [r, g, b]; + }; + + Color.rgb2hex = function(r, g, b) { + var str, u, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + u = r << 16 | g << 8 | b; + str = '000000' + u.toString(16).toUpperCase(); + return '#' + str.substr(str.length - 6); + }; + + Color.hsv2rgb = function(h, s, v) { + var b, f, g, i, l, p, q, r, t, _ref2, _ref3, _ref4, _ref5, _ref6, _ref7, _ref8; + if (type(h) === 'array' && h.length === 3) { + _ref2 = h, h = _ref2[0], s = _ref2[1], l = _ref2[2]; + } + v *= 255; + if (s === 0 && isNaN(h)) { + r = g = b = v; + } else { + if (h === 360) h = 0; + if (h > 360) h -= 360; + if (h < 0) h += 360; + h /= 60; + i = Math.floor(h); + f = h - i; + p = v * (1 - s); + q = v * (1 - s * f); + t = v * (1 - s * (1 - f)); + switch (i) { + case 0: + _ref3 = [v, t, p], r = _ref3[0], g = _ref3[1], b = _ref3[2]; + break; + case 1: + _ref4 = [q, v, p], r = _ref4[0], g = _ref4[1], b = _ref4[2]; + break; + case 2: + _ref5 = [p, v, t], r = _ref5[0], g = _ref5[1], b = _ref5[2]; + break; + case 3: + _ref6 = [p, q, v], r = _ref6[0], g = _ref6[1], b = _ref6[2]; + break; + case 4: + _ref7 = [t, p, v], r = _ref7[0], g = _ref7[1], b = _ref7[2]; + break; + case 5: + _ref8 = [v, p, q], r = _ref8[0], g = _ref8[1], b = _ref8[2]; + } + } + r = Math.round(r); + g = Math.round(g); + b = Math.round(b); + return [r, g, b]; + }; + + Color.rgb2hsv = function(r, g, b) { + var delta, h, max, min, s, v, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + min = Math.min(r, g, b); + max = Math.max(r, g, b); + delta = max - min; + v = max / 255.0; + s = delta / max; + if (s === 0) { + h = void 0; + s = 0; + } else { + if (r === max) h = (g - b) / delta; + if (g === max) h = 2 + (b - r) / delta; + if (b === max) h = 4 + (r - g) / delta; + h *= 60; + if (h < 0) h += 360; + } + return [h, s, v]; + }; + + Color.hsl2rgb = function(h, s, l) { + var b, c, g, i, r, t1, t2, t3, _ref2, _ref3; + if (h !== void 0 && h.length === 3) { + _ref2 = h, h = _ref2[0], s = _ref2[1], l = _ref2[2]; + } + if (s === 0) { + r = g = b = l * 255; + } else { + t3 = [0, 0, 0]; + c = [0, 0, 0]; + t2 = l < 0.5 ? l * (1 + s) : l + s - l * s; + t1 = 2 * l - t2; + h /= 360; + t3[0] = h + 1 / 3; + t3[1] = h; + t3[2] = h - 1 / 3; + for (i = 0; i <= 2; i++) { + if (t3[i] < 0) t3[i] += 1; + if (t3[i] > 1) t3[i] -= 1; + if (6 * t3[i] < 1) { + c[i] = t1 + (t2 - t1) * 6 * t3[i]; + } else if (2 * t3[i] < 1) { + c[i] = t2; + } else if (3 * t3[i] < 2) { + c[i] = t1 + (t2 - t1) * ((2 / 3) - t3[i]) * 6; + } else { + c[i] = t1; + } + } + _ref3 = [Math.round(c[0] * 255), Math.round(c[1] * 255), Math.round(c[2] * 255)], r = _ref3[0], g = _ref3[1], b = _ref3[2]; + } + return [r, g, b]; + }; + + Color.rgb2hsl = function(r, g, b) { + var h, l, max, min, s, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + r /= 255; + g /= 255; + b /= 255; + min = Math.min(r, g, b); + max = Math.max(r, g, b); + l = (max + min) / 2; + if (max === min) { + s = 0; + h = void 0; + } else { + s = l < 0.5 ? (max - min) / (max + min) : (max - min) / (2 - max - min); + } + if (r === max) { + h = (g - b) / (max - min); + } else if (g === max) { + h = 2 + (b - r) / (max - min); + } else if (b === max) { + h = 4 + (r - g) / (max - min); + } + h *= 60; + if (h < 0) h += 360; + return [h, s, l]; + }; + + Color.lab2xyz = function(l, a, b) { + var finv, ill, sl, x, y, z, _ref2; + if (type(l) === 'array' && l.length === 3) { + _ref2 = l, l = _ref2[0], a = _ref2[1], b = _ref2[2]; + } + finv = function(t) { + if (t > (6.0 / 29.0)) { + return t * t * t; + } else { + return 3 * (6.0 / 29.0) * (6.0 / 29.0) * (t - 4.0 / 29.0); + } + }; + sl = (l + 0.16) / 1.16; + ill = [0.96421, 1.00000, 0.82519]; + y = ill[1] * finv(sl); + x = ill[0] * finv(sl + (a / 5.0)); + z = ill[2] * finv(sl - (b / 2.0)); + return [x, y, z]; + }; + + Color.xyz2rgb = function(x, y, z) { + var b, bl, clip, correct, g, gl, r, rl, _ref2, _ref3; + if (type(x) === 'array' && x.length === 3) { + _ref2 = x, x = _ref2[0], y = _ref2[1], z = _ref2[2]; + } + rl = 3.2406 * x - 1.5372 * y - 0.4986 * z; + gl = -0.9689 * x + 1.8758 * y + 0.0415 * z; + bl = 0.0557 * x - 0.2040 * y + 1.0570 * z; + clip = Math.min(rl, gl, bl) < -0.001 || Math.max(rl, gl, bl) > 1.001; + if (clip) { + rl = rl < 0.0 ? 0.0 : rl > 1.0 ? 1.0 : rl; + gl = gl < 0.0 ? 0.0 : gl > 1.0 ? 1.0 : gl; + bl = bl < 0.0 ? 0.0 : bl > 1.0 ? 1.0 : bl; + } + if (clip) { + _ref3 = [void 0, void 0, void 0], rl = _ref3[0], gl = _ref3[1], bl = _ref3[2]; + } + correct = function(cl) { + var a; + a = 0.055; + if (cl <= 0.0031308) { + return 12.92 * cl; + } else { + return (1 + a) * Math.pow(cl, 1 / 2.4) - a; + } + }; + r = Math.round(255.0 * correct(rl)); + g = Math.round(255.0 * correct(gl)); + b = Math.round(255.0 * correct(bl)); + return [r, g, b]; + }; + + Color.lab2rgb = function(l, a, b) { + var x, y, z, _ref2, _ref3, _ref4; + if (l !== void 0 && l.length === 3) { + _ref2 = l, l = _ref2[0], a = _ref2[1], b = _ref2[2]; + } + if (l !== void 0 && l.length === 3) { + _ref3 = l, l = _ref3[0], a = _ref3[1], b = _ref3[2]; + } + _ref4 = Color.lab2xyz(l, a, b), x = _ref4[0], y = _ref4[1], z = _ref4[2]; + return Color.xyz2rgb(x, y, z); + }; + + Color.hcl2lab = function(c, s, l) { + var L, tau_const, a, angle, b, r, _ref2; + if (type(c) === 'array' && c.length === 3) { + _ref2 = c, c = _ref2[0], s = _ref2[1], l = _ref2[2]; + } + c /= 360.0; + tau_const = 6.283185307179586476925287; + L = l * 0.61 + 0.09; + angle = tau_const / 6.0 - c * tau_const; + r = (l * 0.311 + 0.125) * s; + a = Math.sin(angle) * r; + b = Math.cos(angle) * r; + return [L, a, b]; + }; + + Color.hcl2rgb = function(c, s, l) { + var L, a, b, _ref2; + _ref2 = Color.hcl2lab(c, s, l), L = _ref2[0], a = _ref2[1], b = _ref2[2]; + return Color.lab2rgb(L, a, b); + }; + + Color.rgb2xyz = function(r, g, b) { + var bl, correct, gl, rl, x, y, z, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + correct = function(c) { + var a; + a = 0.055; + if (c <= 0.04045) { + return c / 12.92; + } else { + return Math.pow((c + a) / (1 + a), 2.4); + } + }; + rl = correct(r / 255.0); + gl = correct(g / 255.0); + bl = correct(b / 255.0); + x = 0.4124 * rl + 0.3576 * gl + 0.1805 * bl; + y = 0.2126 * rl + 0.7152 * gl + 0.0722 * bl; + z = 0.0193 * rl + 0.1192 * gl + 0.9505 * bl; + return [x, y, z]; + }; + + Color.xyz2lab = function(x, y, z) { + var a, b, f, ill, l, _ref2; + if (x !== void 0 && x.length === 3) { + _ref2 = x, x = _ref2[0], y = _ref2[1], z = _ref2[2]; + } + ill = [0.96421, 1.00000, 0.82519]; + f = function(t) { + if (t > Math.pow(6.0 / 29.0, 3)) { + return Math.pow(t, 1 / 3); + } else { + return (1 / 3) * (29 / 6) * (29 / 6) * t + 4.0 / 29.0; + } + }; + l = 1.16 * f(y / ill[1]) - 0.16; + a = 5 * (f(x / ill[0]) - f(y / ill[1])); + b = 2 * (f(y / ill[1]) - f(z / ill[2])); + return [l, a, b]; + }; + + Color.rgb2lab = function(r, g, b) { + var x, y, z, _ref2, _ref3; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + _ref3 = Color.rgb2xyz(r, g, b), x = _ref3[0], y = _ref3[1], z = _ref3[2]; + return Color.xyz2lab(x, y, z); + }; + + Color.lab2hcl = function(l, a, b) { + var L, tau_const, angle, c, r, s, _ref2; + if (type(l) === 'array' && l.length === 3) { + _ref2 = l, l = _ref2[0], a = _ref2[1], b = _ref2[2]; + } + L = l; + l = (l - 0.09) / 0.61; + r = Math.sqrt(a * a + b * b); + s = r / (l * 0.311 + 0.125); + tau_const = 6.283185307179586476925287; + angle = Math.atan2(a, b); + c = (tau_const / 6 - angle) / tau_const; + c *= 360; + if (c < 0) c += 360; + return [c, s, l]; + }; + + Color.rgb2hcl = function(r, g, b) { + var a, l, _ref2, _ref3; + if (type(r) === 'array' && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + _ref3 = Color.rgb2lab(r, g, b), l = _ref3[0], a = _ref3[1], b = _ref3[2]; + return Color.lab2hcl(l, a, b); + }; + + Color.rgb2hsi = function(r, g, b) { + var pi_const_x2, h, i, min, s, _ref2; + if (type(r) === 'array' && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + pi_const_x2 = Math.PI * 2; + r /= 255; + g /= 255; + b /= 255; + min = Math.min(r, g, b); + i = (r + g + b) / 3; + s = 1 - min / i; + if (s === 0) { + h = 0; + } else { + h = ((r - g) + (r - b)) / 2; + h /= Math.sqrt((r - g) * (r - g) + (r - b) * (g - b)); + h = Math.acos(h); + if (b > g) h = pi_const_x2 - h; + h /= pi_const_x2; + } + return [h * 360, s, i]; + }; + + Color.hsi2rgb = function(h, s, i) { + var pi_const_div3, pi_const_x2, b, cos, g, r, _ref2; + if (type(h) === 'array' && h.length === 3) { + _ref2 = h, h = _ref2[0], s = _ref2[1], i = _ref2[2]; + } + pi_const_x2 = Math.PI * 2; + pi_const_div3 = Math.PI / 3; + cos = Math.cos; + if (h < 0) h += 360; + if (h > 360) h -= 360; + h /= 360; + if (h < 1 / 3) { + b = (1 - s) / 3; + r = (1 + s * cos(pi_const_x2 * h) / cos(pi_const_div3 - pi_const_x2 * h)) / 3; + g = 1 - (b + r); + } else if (h < 2 / 3) { + h -= 1 / 3; + r = (1 - s) / 3; + g = (1 + s * cos(pi_const_x2 * h) / cos(pi_const_div3 - pi_const_x2 * h)) / 3; + b = 1 - (r + g); + } else { + h -= 2 / 3; + g = (1 - s) / 3; + b = (1 + s * cos(pi_const_x2 * h) / cos(pi_const_div3 - pi_const_x2 * h)) / 3; + r = 1 - (g + b); + } + r = i * r * 3; + g = i * g * 3; + b = i * b * 3; + return [r * 255, g * 255, b * 255]; + }; + + chromato.Color = Color; + + chromato.hsl = function(h, s, l) { + return new Color(h, s, l, 'hsl'); + }; + + chromato.hsv = function(h, s, v) { + return new Color(h, s, v, 'hsv'); + }; + + chromato.rgb = function(r, g, b) { + return new Color(r, g, b, 'rgb'); + }; + + chromato.hex = function(x) { + return new Color(x); + }; + + chromato.lab = function(l, a, b) { + return new Color(l, a, b, 'lab'); + }; + + chromato.hcl = function(c, s, l) { + return new Color(c, s, l, 'hcl'); + }; + + chromato.hsi = function(h, s, i) { + return new Color(h, s, i, 'hsi'); + }; + + chromato.interpolate = function(a, b, f, m) { + if (type(a) === 'string') a = new Color(a); + if (type(b) === 'string') b = new Color(b); + return a.interpolate(f, b, m); + }; + + ColorScale = (function() { + + function ColorScale(opts) { + var c, col, cols, me, _ref2, _ref3, _ref4, _ref5, _ref6, _ref7; + me = this; + me.colors = cols = (_ref2 = opts.colors) != null ? _ref2 : ['#ddd', '#222']; + for (c = 0, _ref3 = cols.length - 1; 0 <= _ref3 ? c <= _ref3 : c >= _ref3; 0 <= _ref3 ? c++ : c--) { + col = cols[c]; + if (type(col) === 'string') cols[c] = new Color(col); + } + if (opts.positions != null) { + me.pos = opts.positions; + } else { + me.pos = []; + for (c = 0, _ref4 = cols.length - 1; 0 <= _ref4 ? c <= _ref4 : c >= _ref4; 0 <= _ref4 ? c++ : c--) { + me.pos.push(c / (cols.length - 1)); + } + } + me.mode = (_ref5 = opts.mode) != null ? _ref5 : 'hsv'; + me.nacol = (_ref6 = opts.nacol) != null ? _ref6 : '#ccc'; + me.setClasses((_ref7 = opts.limits) != null ? _ref7 : [0, 1]); + me; + } + + ColorScale.prototype.getColor = function(value) { + var c, f, f0, me; + me = this; + if (isNaN(value)) return me.nacol; + if (me.classLimits.length > 2) { + c = me.getClass(value); + f = c / (me.numClasses - 1); + } else { + f = f0 = (value - me.min) / (me.max - me.min); + f = Math.min(1, Math.max(0, f)); + } + return me.fColor(f); + }; + + ColorScale.prototype.fColor = function(f) { + var col, cols, i, me, p, _ref2; + me = this; + cols = me.colors; + for (i = 0, _ref2 = me.pos.length - 1; 0 <= _ref2 ? i <= _ref2 : i >= _ref2; 0 <= _ref2 ? i++ : i--) { + p = me.pos[i]; + if (f <= p) { + col = cols[i]; + break; + } + if (f >= p && i === me.pos.length - 1) { + col = cols[i]; + break; + } + if (f > p && f < me.pos[i + 1]) { + f = (f - p) / (me.pos[i + 1] - p); + col = chromato.interpolate(cols[i], cols[i + 1], f, me.mode); + break; + } + } + return col; + }; + + ColorScale.prototype.classifyValue = function(value) { + var i, limits, maxc, minc, n, self; + self = this; + limits = self.classLimits; + if (limits.length > 2) { + n = limits.length - 1; + i = self.getClass(value); + value = limits[i] + (limits[i + 1] - limits[i]) * 0.5; + minc = limits[0]; + maxc = limits[n - 1]; + value = self.min + ((value - minc) / (maxc - minc)) * (self.max - self.min); + } + return value; + }; + + ColorScale.prototype.setClasses = function(limits) { + var me; + if (limits == null) limits = []; + me = this; + me.classLimits = limits; + me.min = limits[0]; + me.max = limits[limits.length - 1]; + if (limits.length === 2) { + return me.numClasses = 0; + } else { + return me.numClasses = limits.length - 1; + } + }; + + ColorScale.prototype.getClass = function(value) { + var i, limits, n, self; + self = this; + limits = self.classLimits; + if (limits != null) { + n = limits.length - 1; + i = 0; + while (i < n && value >= limits[i]) { + i++; + } + return i - 1; + } + }; + + ColorScale.prototype.validValue = function(value) { + return !isNaN(value); + }; + return ColorScale; + })(); + + chromato.ColorScale = ColorScale; + + Ramp = (function() { + __extends(Ramp, ColorScale); + + function Ramp(col0, col1, mode) { + if (col0 == null) col0 = '#fe0000'; + if (col1 == null) col1 = '#feeeee'; + if (mode == null) mode = 'hsl'; + Ramp.__super__.constructor.call(this, [col0, col1], [0, 1], mode); + } + return Ramp; + })(); + + chromato.Ramp = Ramp; + + Categories = (function() { + __extends(Categories, ColorScale); + + function Categories(colors) { + var me; + me = this; + me.colors = colors; + } + + Categories.prototype.parseData = function(data, data_col) {}; + + Categories.prototype.getColor = function(value) { + var me; + me = this; + if (me.colors.hasOwnProperty(value)) { + return me.colors[value]; + } else { + return '#cccccc'; + } + }; + + Categories.prototype.validValue = function(value) { + return this.colors.hasOwnProperty(value); + }; + return Categories; + })(); + + chromato.Categories = Categories; + + CSSColors = (function() { + __extends(CSSColors, ColorScale); + + function CSSColors(name) { + var me; + me = this; + me.name = name; + me.setClasses(7); + me; + } + + CSSColors.prototype.getColor = function(value) { + var c, me; + me = this; + c = me.getClass(value); + return me.name + ' l' + me.numClasses + ' c' + c; + }; + + return CSSColors; + })(); + + chromato.CSSColors = CSSColors; + + if ((_ref2 = chromato.scales) == null) chromato.scales = {}; + + chromato.limits = function(data, mode, num, prop) { + var assignments, best, centroids, cluster, clusterSizes, dist, i, j, k, kClusters, limits, max, min, mindist, n, nb_iters, newCentroids, p, pb, pr, repeat, row, sum, tmpKMeansBreaks, val, value, values, _i, _j, _k, _len, _len2, _len3, _ref10, _ref11, _ref12, _ref13, _ref14, _ref15, _ref16, _ref3, _ref4, _ref5, _ref6, _ref7, _ref8, _ref9; + if (mode == null) mode = 'equal'; + if (num == null) num = 7; + if (prop == null) prop = null; + min = Number.MAX_VALUE; + max = Number.MAX_VALUE * -1; + sum = 0; + values = []; + if (type(data) === 'array') { + if (type(data[0]) !== 'object' && type(data[0]) !== 'array') { + for (_i = 0, _len = data.length; _i < _len; _i++) { + val = data[_i]; + if (!isNaN(val)) values.push(Number(val)); + } + } else { + for (_j = 0, _len2 = data.length; _j < _len2; _j++) { + row = data[_j]; + values.push(Number(row[prop])); + } + } + } else if (type(data) === 'object') { + for (k in data) { + val = data[k]; + if (type(val) === 'object' && type(prop) === 'string') { + if (!isNaN(val[prop])) values.push(Number(val[prop])); + } else if (type(val) === 'array' && type(prop) === 'number') { + if (!isNaN(val[prop])) values.push(Number(val[prop])); + } else if (type(val) === 'number') { + if (!isNaN(val)) values.push(Number(val)); + } + } + } + for (_k = 0, _len3 = values.length; _k < _len3; _k++) { + val = values[_k]; + if (!!isNaN(val)) continue; + if (val < min) min = val; + if (val > max) max = val; + sum += val; + } + values = values.sort(function(a, b) { + return a - b; + }); + limits = []; + if (mode.substr(0, 1) === 'c') { + limits.push(min); + limits.push(max); + } + if (mode.substr(0, 1) === 'e') { + limits.push(min); + for (i = 1, _ref3 = num - 1; 1 <= _ref3 ? i <= _ref3 : i >= _ref3; 1 <= _ref3 ? i++ : i--) { + limits.push(min + (i / num) * (max - min)); + } + limits.push(max); + } else if (mode.substr(0, 1) === 'q') { + limits.push(min); + for (i = 1, _ref4 = num - 1; 1 <= _ref4 ? i <= _ref4 : i >= _ref4; 1 <= _ref4 ? i++ : i--) { + p = values.length * i / num; + pb = Math.floor(p); + if (pb === p) { + limits.push(values[pb]); + } else { + pr = p - pb; + limits.push(values[pb] * pr + values[pb + 1] * (1 - pr)); + } + } + limits.push(max); + } else if (mode.substr(0, 1) === 'k') { + n = values.length; + assignments = new Array(n); + clusterSizes = new Array(num); + repeat = true; + nb_iters = 0; + centroids = null; + centroids = []; + centroids.push(min); + for (i = 1, _ref5 = num - 1; 1 <= _ref5 ? i <= _ref5 : i >= _ref5; 1 <= _ref5 ? i++ : i--) { + centroids.push(min + (i / num) * (max - min)); + } + centroids.push(max); + while (repeat) { + for (j = 0, _ref6 = num - 1; 0 <= _ref6 ? j <= _ref6 : j >= _ref6; 0 <= _ref6 ? j++ : j--) { + clusterSizes[j] = 0; + } + for (i = 0, _ref7 = n - 1; 0 <= _ref7 ? i <= _ref7 : i >= _ref7; 0 <= _ref7 ? i++ : i--) { + value = values[i]; + mindist = Number.MAX_VALUE; + for (j = 0, _ref8 = num - 1; 0 <= _ref8 ? j <= _ref8 : j >= _ref8; 0 <= _ref8 ? j++ : j--) { + dist = Math.abs(centroids[j] - value); + if (dist < mindist) { + mindist = dist; + best = j; + } + } + clusterSizes[best]++; + assignments[i] = best; + } + newCentroids = new Array(num); + for (j = 0, _ref9 = num - 1; 0 <= _ref9 ? j <= _ref9 : j >= _ref9; 0 <= _ref9 ? j++ : j--) { + newCentroids[j] = null; + } + for (i = 0, _ref10 = n - 1; 0 <= _ref10 ? i <= _ref10 : i >= _ref10; 0 <= _ref10 ? i++ : i--) { + cluster = assignments[i]; + if (newCentroids[cluster] === null) { + newCentroids[cluster] = values[i]; + } else { + newCentroids[cluster] += values[i]; + } + } + for (j = 0, _ref11 = num - 1; 0 <= _ref11 ? j <= _ref11 : j >= _ref11; 0 <= _ref11 ? j++ : j--) { + newCentroids[j] *= 1 / clusterSizes[j]; + } + repeat = false; + for (j = 0, _ref12 = num - 1; 0 <= _ref12 ? j <= _ref12 : j >= _ref12; 0 <= _ref12 ? j++ : j--) { + if (newCentroids[j] !== centroids[i]) { + repeat = true; + break; + } + } + centroids = newCentroids; + nb_iters++; + if (nb_iters > 200) repeat = false; + } + kClusters = {}; + for (j = 0, _ref13 = num - 1; 0 <= _ref13 ? j <= _ref13 : j >= _ref13; 0 <= _ref13 ? j++ : j--) { + kClusters[j] = []; + } + for (i = 0, _ref14 = n - 1; 0 <= _ref14 ? i <= _ref14 : i >= _ref14; 0 <= _ref14 ? i++ : i--) { + cluster = assignments[i]; + kClusters[cluster].push(values[i]); + } + tmpKMeansBreaks = []; + for (j = 0, _ref15 = num - 1; 0 <= _ref15 ? j <= _ref15 : j >= _ref15; 0 <= _ref15 ? j++ : j--) { + tmpKMeansBreaks.push(kClusters[j][0]); + tmpKMeansBreaks.push(kClusters[j][kClusters[j].length - 1]); + } + tmpKMeansBreaks = tmpKMeansBreaks.sort(function(a, b) { + return a - b; + }); + limits.push(tmpKMeansBreaks[0]); + for (i = 1, _ref16 = tmpKMeansBreaks.length - 1; i <= _ref16; i += 2) { + if (!isNaN(tmpKMeansBreaks[i])) limits.push(tmpKMeansBreaks[i]); + } + } + return limits; + }; + + root = typeof exports !== 'undefined' && exports !== null ? exports : this; + + type = (function() { + var classToType, name, _i, _len, _ref3; + classToType = {}; + _ref3 = 'Boolean Number String Function Array Date RegExp Undefined Null'.split(' '); + for (_i = 0, _len = _ref3.length; _i < _len; _i++) { + name = _ref3[_i]; + classToType['[object ' + name + ']'] = name.toLowerCase(); + } + return function(obj) { + var strType; + strType = Object.prototype.toString.call(obj); + return classToType[strType] || 'object'; + }; + })(); + + if ((_ref3 = root.type) == null) root.type = type; + + Array.max = function(array) { + return Math.max.apply(Math, array); + }; + + Array.min = function(array) { + return Math.min.apply(Math, array); + }; + +}).call(this); + +var createPalette = { + generate: function(colorsCount, checkColor, forceMode, quality, ultra_precision){ + if(colorsCount === undefined) + colorsCount = 8; + if(checkColor === undefined) + checkColor = function(x){return true;}; + if(forceMode === undefined) + forceMode = false; + if(quality === undefined) + quality = 50; + ultra_precision = ultra_precision || false + + if(forceMode){ + var colors = []; + function checkLab(lab){ + var color = chromato.lab(lab[0], lab[1], lab[2]); + return !isNaN(color.rgb[0]) && color.rgb[0] >= 0 && color.rgb[1] >= 0 && color.rgb[2] >= 0 && color.rgb[0] < 256 && color.rgb[1] < 256 && color.rgb[2] < 256 && checkColor(color); + } + + var vectors = {}; + for(i = 0; i < colorsCount; i++){ + var color = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + while(!checkLab(color)){ + color = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + } + colors.push(color); + } + + var repulsion = 0.3; + var speed = 0.05; + var steps = quality * 20; + while(steps-- > 0){ + for(i = 0; i < colors.length; i++){ + vectors[i] = {dl:0, da:0, db:0}; + } + for(i = 0; i < colors.length; i++){ + var color_a = colors[i]; + for(j = 0; j < i; j++){ + var color_b = colors[j]; + var dl = color_a[0] - color_b[0]; + var da = color_a[1] - color_b[1]; + var db = color_a[2] - color_b[2]; + var d = Math.sqrt(Math.pow(dl, 2) + Math.pow(da, 2) + Math.pow(db, 2)); + if(d > 0){ + var force = repulsion / Math.pow(d, 2); + vectors[i].dl += dl * force / d; + vectors[i].da += da * force / d; + vectors[i].db += db * force / d; + vectors[j].dl -= dl * force / d; + vectors[j].da -= da * force / d; + vectors[j].db -= db * force / d; + } else { + vectors[j].dl += 0.02 - 0.04 * Math.random(); + vectors[j].da += 0.02 - 0.04 * Math.random(); + vectors[j].db += 0.02 - 0.04 * Math.random(); + } + } + } + for(i = 0; i < colors.length; i++){ + var color = colors[i]; + var displacement = speed * Math.sqrt(Math.pow(vectors[i].dl, 2) + Math.pow(vectors[i].da, 2) + Math.pow(vectors[i].db, 2)); + if(displacement>0){ + var ratio = speed * Math.min(0.1, displacement)/displacement; + candidateLab = [color[0] + vectors[i].dl * ratio, color[1] + vectors[i].da * ratio, color[2] + vectors[i].db * ratio]; + if(checkLab(candidateLab)){ + colors[i] = candidateLab; + } + } + } + } + return colors.map(function(lab){return chromato.lab(lab[0], lab[1], lab[2]);}); + } else { + function checkColor2(color){ + var lab = color.lab(); + var hcl = color.hcl(); + return !isNaN(color.rgb[0]) && color.rgb[0] >= 0 && color.rgb[1] >= 0 && color.rgb[2] >= 0 && color.rgb[0]<256 && color.rgb[1]<256 && color.rgb[2]<256 && checkColor(color); + } + var kMeans = []; + for(i = 0; i < colorsCount; i++){ + var lab = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + while(!checkColor2(chromato.lab(lab))){ + lab = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + } + kMeans.push(lab); + } + var colorSamples = []; + var samplesClosest = []; + if(ultra_precision){ + for(l = 0; l <= 1; l += 0.01){ + for(a =- 1; a <= 1; a += 0.05){ + for(b =- 1; b <= 1; b += 0.05){ + if(checkColor2(chromato.lab(l, a, b))){ + colorSamples.push([l, a, b]); + samplesClosest.push(null); + } + } + } + } + } else { + for(l = 0; l <= 1; l += 0.05){ + for(a =- 1; a <= 1; a += 0.1){ + for(b =- 1; b <= 1; b += 0.1){ + if(checkColor2(chromato.lab(l, a, b))){ + colorSamples.push([l, a, b]); + samplesClosest.push(null); + } + } + } + } + } + var steps = quality; + while(steps-- > 0){ + for(i = 0; i < colorSamples.length; i++){ + var lab = colorSamples[i]; + var min_dist = 1000000; + for(j = 0; j < kMeans.length; j++){ + var kMean = kMeans[j]; + var distance = Math.sqrt(Math.pow(lab[0] - kMean[0], 2) + Math.pow(lab[1]-kMean[1], 2) + Math.pow(lab[2] - kMean[2], 2)); + if(distance < min_dist){ + min_dist = distance; + samplesClosest[i] = j; + } + } + } + var freeColorSamples = colorSamples.slice(0); + for(j = 0; j < kMeans.length; j++){ + var count = 0; + var candidateKMean = [0, 0, 0]; + for(i = 0; i < colorSamples.length; i++){ + if(samplesClosest[i] == j){ + count++; + candidateKMean[0] += colorSamples[i][0]; + candidateKMean[1] += colorSamples[i][1]; + candidateKMean[2] += colorSamples[i][2]; + } + } + if(count != 0){ + candidateKMean[0] /= count; + candidateKMean[1] /= count; + candidateKMean[2] /= count; + } + if(count != 0 && checkColor2(chromato.lab(candidateKMean[0], candidateKMean[1], candidateKMean[2])) && candidateKMean){ + kMeans[j] = candidateKMean; + } else { + if(freeColorSamples.length>0){ + var min_dist = 10000000000; + var closest = -1; + for(i = 0; i 0){ + var index = -1; + var maxDistance = -1; + for(candidate_index = 0; candidate_index < colorsToSort.length; candidate_index++){ + var d = 1000000000; + for(i = 0; i < diffColors.length; i++){ + var color_a = colorsToSort[candidate_index].lab(); + var color_b = diffColors[i].lab(); + var dl = color_a[0] - color_b[0]; + var da = color_a[1] - color_b[1]; + var db = color_a[2] - color_b[2]; + d = Math.min(d, Math.sqrt(Math.pow(dl, 2)+Math.pow(da, 2)+Math.pow(db, 2))); + } + if(d > maxDistance){ + maxDistance = d; + index = candidate_index; + } + } + var color = colorsToSort[index]; + diffColors.push(color); + colorsToSort = colorsToSort.filter(function(c,i){return i != index;}); + } + return diffColors; + } +} diff --git a/docs/articles/sd_iv_rich_pkpd_files/d3-3.3.8/LICENSE b/docs/articles/sd_iv_rich_pkpd_files/d3-3.3.8/LICENSE new file mode 100644 index 0000000..8301346 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/d3-3.3.8/LICENSE @@ -0,0 +1,26 @@ +Copyright (c) 2010-2014, Michael Bostock +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are met: + +* Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + +* Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +* The name Michael Bostock may not be used to endorse or promote products + derived from this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. 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100644 index 0000000..1d64ed6 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/dagre-0.4.0/LICENSE @@ -0,0 +1,19 @@ +Copyright (c) 2013 Chris Pettitt + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. diff --git a/docs/articles/sd_iv_rich_pkpd_files/dagre-0.4.0/dagre-d3.min.js b/docs/articles/sd_iv_rich_pkpd_files/dagre-0.4.0/dagre-d3.min.js new file mode 100644 index 0000000..7b8a890 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/dagre-0.4.0/dagre-d3.min.js @@ -0,0 +1,27 @@ +!function(e){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=e();else if("function"==typeof define&&define.amd)define([],e);else{var f;"undefined"!=typeof window?f=window:"undefined"!=typeof global?f=global:"undefined"!=typeof self&&(f=self),f.dagreD3=e()}}(function(){var define,module,exports;return function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o0}},{}],14:[function(require,module,exports){module.exports=intersectNode;function intersectNode(node,point){return node.intersect(point)}},{}],15:[function(require,module,exports){var intersectLine=require("./intersect-line");module.exports=intersectPolygon;function intersectPolygon(node,polyPoints,point){var x1=node.x;var y1=node.y;var intersections=[];var minX=Number.POSITIVE_INFINITY,minY=Number.POSITIVE_INFINITY;polyPoints.forEach(function(entry){minX=Math.min(minX,entry.x);minY=Math.min(minY,entry.y)});var left=x1-node.width/2-minX;var top=y1-node.height/2-minY;for(var i=0;i1){intersections.sort(function(p,q){var pdx=p.x-point.x,pdy=p.y-point.y,distp=Math.sqrt(pdx*pdx+pdy*pdy),qdx=q.x-point.x,qdy=q.y-point.y,distq=Math.sqrt(qdx*qdx+qdy*qdy);return distpMath.abs(dx)*h){if(dy<0){h=-h}sx=dy===0?0:h*dx/dy;sy=h}else{if(dx<0){w=-w}sx=w;sy=dx===0?0:w*dy/dx}return{x:x+sx,y:y+sy}}},{}],17:[function(require,module,exports){var util=require("../util");module.exports=addHtmlLabel;function addHtmlLabel(root,node){var fo=root.append("foreignObject").attr("width","100000");var div=fo.append("xhtml:div");var label=node.label;switch(typeof label){case"function":div.insert(label);break;case"object":div.insert(function(){return label});break;default:div.html(label)}util.applyStyle(div,node.labelStyle);div.style("display","inline-block");div.style("white-space","nowrap");var w,h;div.each(function(){w=this.clientWidth;h=this.clientHeight});fo.attr("width",w).attr("height",h);return fo}},{"../util":25}],18:[function(require,module,exports){var addTextLabel=require("./add-text-label"),addHtmlLabel=require("./add-html-label");module.exports=addLabel;function addLabel(root,node){var label=node.label;var labelSvg=root.append("g");if(typeof label!=="string"||node.labelType==="html"){addHtmlLabel(labelSvg,node)}else{addTextLabel(labelSvg,node)}var labelBBox=labelSvg.node().getBBox();labelSvg.attr("transform","translate("+-labelBBox.width/2+","+-labelBBox.height/2+")");return labelSvg}},{"./add-html-label":17,"./add-text-label":19}],19:[function(require,module,exports){var util=require("../util");module.exports=addTextLabel;function addTextLabel(root,node){var domNode=root.append("text");var lines=processEscapeSequences(node.label).split("\n");for(var i=0;i0;--i){entry=buckets[i].dequeue();if(entry){results=results.concat(removeNode(g,buckets,zeroIdx,entry,true));break}}}}return results}function removeNode(g,buckets,zeroIdx,entry,collectPredecessors){var 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removeSelfEdges",function(){removeSelfEdges(g)});time(" acyclic",function(){acyclic.run(g)});time(" nestingGraph.run",function(){nestingGraph.run(g)});time(" rank",function(){rank(util.asNonCompoundGraph(g))});time(" injectEdgeLabelProxies",function(){injectEdgeLabelProxies(g)});time(" removeEmptyRanks",function(){removeEmptyRanks(g)});time(" nestingGraph.cleanup",function(){nestingGraph.cleanup(g)});time(" normalizeRanks",function(){normalizeRanks(g)});time(" assignRankMinMax",function(){assignRankMinMax(g)});time(" removeEdgeLabelProxies",function(){removeEdgeLabelProxies(g)});time(" normalize.run",function(){normalize.run(g)});time(" parentDummyChains",function(){parentDummyChains(g)});time(" addBorderSegments",function(){addBorderSegments(g)});time(" order",function(){order(g)});time(" insertSelfEdges",function(){insertSelfEdges(g)});time(" adjustCoordinateSystem",function(){coordinateSystem.adjust(g)});time(" position",function(){position(g)});time(" positionSelfEdges",function(){positionSelfEdges(g)});time(" removeBorderNodes",function(){removeBorderNodes(g)});time(" normalize.undo",function(){normalize.undo(g)});time(" fixupEdgeLabelCoords",function(){fixupEdgeLabelCoords(g)});time(" undoCoordinateSystem",function(){coordinateSystem.undo(g)});time(" translateGraph",function(){translateGraph(g)});time(" assignNodeIntersects",function(){assignNodeIntersects(g)});time(" reversePoints",function(){reversePointsForReversedEdges(g)});time(" acyclic.undo",function(){acyclic.undo(g)})}function updateInputGraph(inputGraph,layoutGraph){_.each(inputGraph.nodes(),function(v){var inputLabel=inputGraph.node(v),layoutLabel=layoutGraph.node(v);if(inputLabel){inputLabel.x=layoutLabel.x;inputLabel.y=layoutLabel.y;if(layoutGraph.children(v).length){inputLabel.width=layoutLabel.width;inputLabel.height=layoutLabel.height}}});_.each(inputGraph.edges(),function(e){var inputLabel=inputGraph.edge(e),layoutLabel=layoutGraph.edge(e);inputLabel.points=layoutLabel.points;if(_.has(layoutLabel,"x")){inputLabel.x=layoutLabel.x;inputLabel.y=layoutLabel.y}});inputGraph.graph().width=layoutGraph.graph().width;inputGraph.graph().height=layoutGraph.graph().height}var graphNumAttrs=["nodesep","edgesep","ranksep","marginx","marginy"],graphDefaults={ranksep:50,edgesep:20,nodesep:50,rankdir:"tb"},graphAttrs=["acyclicer","ranker","rankdir","align"],nodeNumAttrs=["width","height"],nodeDefaults={width:0,height:0},edgeNumAttrs=["minlen","weight","width","height","labeloffset"],edgeDefaults={minlen:1,weight:1,width:0,height:0,labeloffset:10,labelpos:"r"},edgeAttrs=["labelpos"];function buildLayoutGraph(inputGraph){var g=new Graph({multigraph:true,compound:true}),graph=canonicalize(inputGraph.graph());g.setGraph(_.merge({},graphDefaults,selectNumberAttrs(graph,graphNumAttrs),_.pick(graph,graphAttrs)));_.each(inputGraph.nodes(),function(v){var node=canonicalize(inputGraph.node(v));g.setNode(v,_.defaults(selectNumberAttrs(node,nodeNumAttrs),nodeDefaults));g.setParent(v,inputGraph.parent(v))});_.each(inputGraph.edges(),function(e){var edge=canonicalize(inputGraph.edge(e));g.setEdge(e,_.merge({},edgeDefaults,selectNumberAttrs(edge,edgeNumAttrs),_.pick(edge,edgeAttrs)))});return g}function makeSpaceForEdgeLabels(g){var graph=g.graph();graph.ranksep/=2;_.each(g.edges(),function(e){var edge=g.edge(e);edge.minlen*=2;if(edge.labelpos.toLowerCase()!=="c"){if(graph.rankdir==="TB"||graph.rankdir==="BT"){edge.width+=edge.labeloffset}else{edge.height+=edge.labeloffset}}})}function injectEdgeLabelProxies(g){_.each(g.edges(),function(e){var edge=g.edge(e);if(edge.width&&edge.height){var v=g.node(e.v),w=g.node(e.w),label={rank:(w.rank-v.rank)/2+v.rank,e:e};util.addDummyNode(g,"edge-proxy",label,"_ep")}})}function assignRankMinMax(g){var maxRank=0;_.each(g.nodes(),function(v){var node=g.node(v);if(node.borderTop){node.minRank=g.node(node.borderTop).rank;node.maxRank=g.node(node.borderBottom).rank;maxRank=_.max(maxRank,node.maxRank)}});g.graph().maxRank=maxRank}function removeEdgeLabelProxies(g){_.each(g.nodes(),function(v){var node=g.node(v);if(node.dummy==="edge-proxy"){g.edge(node.e).labelRank=node.rank;g.removeNode(v)}})}function translateGraph(g){var minX=Number.POSITIVE_INFINITY,maxX=0,minY=Number.POSITIVE_INFINITY,maxY=0,graphLabel=g.graph(),marginX=graphLabel.marginx||0,marginY=graphLabel.marginy||0;function getExtremes(attrs){var x=attrs.x,y=attrs.y,w=attrs.width,h=attrs.height; +minX=Math.min(minX,x-w/2);maxX=Math.max(maxX,x+w/2);minY=Math.min(minY,y-h/2);maxY=Math.max(maxY,y+h/2)}_.each(g.nodes(),function(v){getExtremes(g.node(v))});_.each(g.edges(),function(e){var edge=g.edge(e);if(_.has(edge,"x")){getExtremes(edge)}});minX-=marginX;minY-=marginY;_.each(g.nodes(),function(v){var node=g.node(v);node.x-=minX;node.y-=minY});_.each(g.edges(),function(e){var edge=g.edge(e);_.each(edge.points,function(p){p.x-=minX;p.y-=minY});if(_.has(edge,"x")){edge.x-=minX}if(_.has(edge,"y")){edge.y-=minY}});graphLabel.width=maxX-minX+marginX;graphLabel.height=maxY-minY+marginY}function assignNodeIntersects(g){_.each(g.edges(),function(e){var edge=g.edge(e),nodeV=g.node(e.v),nodeW=g.node(e.w),p1,p2;if(!edge.points){edge.points=[];p1=nodeW;p2=nodeV}else{p1=edge.points[0];p2=edge.points[edge.points.length-1]}edge.points.unshift(util.intersectRect(nodeV,p1));edge.points.push(util.intersectRect(nodeW,p2))})}function fixupEdgeLabelCoords(g){_.each(g.edges(),function(e){var edge=g.edge(e);if(_.has(edge,"x")){if(edge.labelpos==="l"||edge.labelpos==="r"){edge.width-=edge.labeloffset}switch(edge.labelpos){case"l":edge.x-=edge.width/2+edge.labeloffset;break;case"r":edge.x+=edge.width/2+edge.labeloffset;break}}})}function reversePointsForReversedEdges(g){_.each(g.edges(),function(e){var edge=g.edge(e);if(edge.reversed){edge.points.reverse()}})}function removeBorderNodes(g){_.each(g.nodes(),function(v){if(g.children(v).length){var node=g.node(v),t=g.node(node.borderTop),b=g.node(node.borderBottom),l=g.node(_.last(node.borderLeft)),r=g.node(_.last(node.borderRight));node.width=Math.abs(r.x-l.x);node.height=Math.abs(b.y-t.y);node.x=l.x+node.width/2;node.y=t.y+node.height/2}});_.each(g.nodes(),function(v){if(g.node(v).dummy==="border"){g.removeNode(v)}})}function removeSelfEdges(g){_.each(g.edges(),function(e){if(e.v===e.w){var node=g.node(e.v);if(!node.selfEdges){node.selfEdges=[]}node.selfEdges.push({e:e,label:g.edge(e)});g.removeEdge(e)}})}function insertSelfEdges(g){var layers=util.buildLayerMatrix(g);_.each(layers,function(layer){var orderShift=0;_.each(layer,function(v,i){var node=g.node(v);node.order=i+orderShift;_.each(node.selfEdges,function(selfEdge){util.addDummyNode(g,"selfedge",{width:selfEdge.label.width,height:selfEdge.label.height,rank:node.rank,order:i+ ++orderShift,e:selfEdge.e,label:selfEdge.label},"_se")});delete node.selfEdges})})}function positionSelfEdges(g){_.each(g.nodes(),function(v){var node=g.node(v);if(node.dummy==="selfedge"){var selfNode=g.node(node.e.v),x=selfNode.x+selfNode.width/2,y=selfNode.y,dx=node.x-x,dy=selfNode.height/2;g.setEdge(node.e,node.label);g.removeNode(v);node.label.points=[{x:x+2*dx/3,y:y-dy},{x:x+5*dx/6,y:y-dy},{x:x+dx,y:y},{x:x+5*dx/6,y:y+dy},{x:x+2*dx/3,y:y+dy}];node.label.x=node.x;node.label.y=node.y}})}function selectNumberAttrs(obj,attrs){return _.mapValues(_.pick(obj,attrs),Number)}function canonicalize(attrs){var newAttrs={};_.each(attrs,function(v,k){newAttrs[k.toLowerCase()]=v});return newAttrs}},{"./acyclic":28,"./add-border-segments":29,"./coordinate-system":30,"./graphlib":33,"./lodash":36,"./nesting-graph":37,"./normalize":38,"./order":43,"./parent-dummy-chains":48,"./position":50,"./rank":52,"./util":55}],36:[function(require,module,exports){module.exports=require(20)},{"/Users/cpettitt/projects/dagre-d3/lib/lodash.js":20,lodash:77}],37:[function(require,module,exports){var _=require("./lodash"),util=require("./util");module.exports={run:run,cleanup:cleanup};function run(g){var root=util.addDummyNode(g,"root",{},"_root"),depths=treeDepths(g),height=_.max(depths)-1,nodeSep=2*height+1;g.graph().nestingRoot=root;_.each(g.edges(),function(e){g.edge(e).minlen*=nodeSep});var weight=sumWeights(g)+1;_.each(g.children(),function(child){dfs(g,root,nodeSep,weight,height,depths,child)});g.graph().nodeRankFactor=nodeSep}function dfs(g,root,nodeSep,weight,height,depths,v){var children=g.children(v);if(!children.length){if(v!==root){g.setEdge(root,v,{weight:0,minlen:nodeSep})}return}var top=util.addBorderNode(g,"_bt"),bottom=util.addBorderNode(g,"_bb"),label=g.node(v);g.setParent(top,v);label.borderTop=top;g.setParent(bottom,v);label.borderBottom=bottom;_.each(children,function(child){dfs(g,root,nodeSep,weight,height,depths,child);var childNode=g.node(child),childTop=childNode.borderTop?childNode.borderTop:child,childBottom=childNode.borderBottom?childNode.borderBottom:child,thisWeight=childNode.borderTop?weight:2*weight,minlen=childTop!==childBottom?1:height-depths[v]+1;g.setEdge(top,childTop,{weight:thisWeight,minlen:minlen,nestingEdge:true});g.setEdge(childBottom,bottom,{weight:thisWeight,minlen:minlen,nestingEdge:true})});if(!g.parent(v)){g.setEdge(root,top,{weight:0,minlen:height+depths[v]})}}function treeDepths(g){var depths={};function dfs(v,depth){var children=g.children(v);if(children&&children.length){_.each(children,function(child){dfs(child,depth+1)})}depths[v]=depth}_.each(g.children(),function(v){dfs(v,1)});return depths}function sumWeights(g){return _.reduce(g.edges(),function(acc,e){return acc+g.edge(e).weight},0)}function cleanup(g){var graphLabel=g.graph();g.removeNode(graphLabel.nestingRoot);delete graphLabel.nestingRoot;_.each(g.edges(),function(e){var edge=g.edge(e);if(edge.nestingEdge){g.removeEdge(e)}})}},{"./lodash":36,"./util":55}],38:[function(require,module,exports){"use strict";var _=require("./lodash"),util=require("./util");module.exports={run:run,undo:undo};function run(g){g.graph().dummyChains=[];_.each(g.edges(),function(edge){normalizeEdge(g,edge)})}function normalizeEdge(g,e){var v=e.v,vRank=g.node(v).rank,w=e.w,wRank=g.node(w).rank,name=e.name,edgeLabel=g.edge(e),labelRank=edgeLabel.labelRank;if(wRank===vRank+1)return;g.removeEdge(e);var dummy,attrs,i;for(i=0,++vRank;vRank0){if(index%2){weightSum+=tree[index+1]}index=index-1>>1;tree[index]+=entry.weight}cc+=entry.weight*weightSum}));return cc}},{"../lodash":36}],43:[function(require,module,exports){"use strict";var _=require("../lodash"),initOrder=require("./init-order"),crossCount=require("./cross-count"),sortSubgraph=require("./sort-subgraph"),buildLayerGraph=require("./build-layer-graph"),addSubgraphConstraints=require("./add-subgraph-constraints"),Graph=require("../graphlib").Graph,util=require("../util");module.exports=order;function order(g){var maxRank=util.maxRank(g),downLayerGraphs=buildLayerGraphs(g,_.range(1,maxRank+1),"inEdges"),upLayerGraphs=buildLayerGraphs(g,_.range(maxRank-1,-1,-1),"outEdges");var layering=initOrder(g);assignOrder(g,layering);var bestCC=Number.POSITIVE_INFINITY,best;for(var i=0,lastBest=0;lastBest<4;++i,++lastBest){sweepLayerGraphs(i%2?downLayerGraphs:upLayerGraphs,i%4>=2);layering=util.buildLayerMatrix(g);var cc=crossCount(g,layering);if(cc=vEntry.barycenter){mergeEntries(vEntry,uEntry)}}}function handleOut(vEntry){return function(wEntry){wEntry["in"].push(vEntry);if(--wEntry.indegree===0){sourceSet.push(wEntry)}}}while(sourceSet.length){var entry=sourceSet.pop();entries.push(entry);_.each(entry["in"].reverse(),handleIn(entry));_.each(entry.out,handleOut(entry))}return _.chain(entries).filter(function(entry){return!entry.merged}).map(function(entry){return _.pick(entry,["vs","i","barycenter","weight"])}).value()}function mergeEntries(target,source){var sum=0,weight=0;if(target.weight){sum+=target.barycenter*target.weight;weight+=target.weight}if(source.weight){sum+=source.barycenter*source.weight;weight+=source.weight}target.vs=source.vs.concat(target.vs);target.barycenter=sum/weight;target.weight=weight;target.i=Math.min(source.i,target.i);source.merged=true}},{"../lodash":36}],46:[function(require,module,exports){var _=require("../lodash"),barycenter=require("./barycenter"),resolveConflicts=require("./resolve-conflicts"),sort=require("./sort");module.exports=sortSubgraph;function sortSubgraph(g,v,cg,biasRight){var movable=g.children(v),node=g.node(v),bl=node?node.borderLeft:undefined,br=node?node.borderRight:undefined,subgraphs={};if(bl){movable=_.filter(movable,function(w){return w!==bl&&w!==br})}var barycenters=barycenter(g,movable);_.each(barycenters,function(entry){if(g.children(entry.v).length){var subgraphResult=sortSubgraph(g,entry.v,cg,biasRight);subgraphs[entry.v]=subgraphResult;if(_.has(subgraphResult,"barycenter")){mergeBarycenters(entry,subgraphResult)}}});var entries=resolveConflicts(barycenters,cg);expandSubgraphs(entries,subgraphs);var result=sort(entries,biasRight);if(bl){result.vs=_.flatten([bl,result.vs,br],true);if(g.predecessors(bl).length){var blPred=g.node(g.predecessors(bl)[0]),brPred=g.node(g.predecessors(br)[0]);if(!_.has(result,"barycenter")){result.barycenter=0;result.weight=0}result.barycenter=(result.barycenter*result.weight+blPred.order+brPred.order)/(result.weight+2);result.weight+=2}}return result}function expandSubgraphs(entries,subgraphs){_.each(entries,function(entry){entry.vs=_.flatten(entry.vs.map(function(v){if(subgraphs[v]){return subgraphs[v].vs}return v}),true)})}function mergeBarycenters(target,other){if(!_.isUndefined(target.barycenter)){target.barycenter=(target.barycenter*target.weight+other.barycenter*other.weight)/(target.weight+other.weight);target.weight+=other.weight}else{target.barycenter=other.barycenter;target.weight=other.weight}}},{"../lodash":36,"./barycenter":40,"./resolve-conflicts":45,"./sort":47}],47:[function(require,module,exports){var _=require("../lodash"),util=require("../util");module.exports=sort;function sort(entries,biasRight){var parts=util.partition(entries,function(entry){return _.has(entry,"barycenter")});var sortable=parts.lhs,unsortable=_.sortBy(parts.rhs,function(entry){return-entry.i}),vs=[],sum=0,weight=0,vsIndex=0;sortable.sort(compareWithBias(!!biasRight));vsIndex=consumeUnsortable(vs,unsortable,vsIndex);_.each(sortable,function(entry){vsIndex+=entry.vs.length;vs.push(entry.vs);sum+=entry.barycenter*entry.weight;weight+=entry.weight;vsIndex=consumeUnsortable(vs,unsortable,vsIndex)});var result={vs:_.flatten(vs,true)};if(weight){result.barycenter=sum/weight;result.weight=weight}return result}function consumeUnsortable(vs,unsortable,index){var last;while(unsortable.length&&(last=_.last(unsortable)).i<=index){unsortable.pop();vs.push(last.vs);index++}return index}function compareWithBias(bias){return function(entryV,entryW){if(entryV.barycenterentryW.barycenter){return 1}return!bias?entryV.i-entryW.i:entryW.i-entryV.i}}},{"../lodash":36,"../util":55}],48:[function(require,module,exports){var _=require("./lodash");module.exports=parentDummyChains;function parentDummyChains(g){var postorderNums=postorder(g);_.each(g.graph().dummyChains,function(v){var node=g.node(v),edgeObj=node.edgeObj,pathData=findPath(g,postorderNums,edgeObj.v,edgeObj.w),path=pathData.path,lca=pathData.lca,pathIdx=0,pathV=path[pathIdx],ascending=true;while(v!==edgeObj.w){node=g.node(v);if(ascending){while((pathV=path[pathIdx])!==lca&&g.node(pathV).maxRanklow||lim>postorderNums[parent].lim));lca=parent;parent=w;while((parent=g.parent(parent))!==lca){wPath.push(parent)}return{path:vPath.concat(wPath.reverse()),lca:lca}}function postorder(g){var result={},lim=0;function dfs(v){var low=lim;_.each(g.children(v),dfs);result[v]={low:low,lim:lim++}}_.each(g.children(),dfs);return result}},{"./lodash":36}],49:[function(require,module,exports){"use strict";var _=require("../lodash"),Graph=require("../graphlib").Graph,util=require("../util");module.exports={positionX:positionX,findType1Conflicts:findType1Conflicts,findType2Conflicts:findType2Conflicts,addConflict:addConflict,hasConflict:hasConflict,verticalAlignment:verticalAlignment,horizontalCompaction:horizontalCompaction,alignCoordinates:alignCoordinates,findSmallestWidthAlignment:findSmallestWidthAlignment,balance:balance};function findType1Conflicts(g,layering){var conflicts={};function visitLayer(prevLayer,layer){var k0=0,scanPos=0,prevLayerLength=prevLayer.length,lastNode=_.last(layer);_.each(layer,function(v,i){var w=findOtherInnerSegmentNode(g,v),k1=w?g.node(w).order:prevLayerLength;if(w||v===lastNode){_.each(layer.slice(scanPos,i+1),function(scanNode){_.each(g.predecessors(scanNode),function(u){var uLabel=g.node(u),uPos=uLabel.order;if((uPosnextNorthBorder)){addConflict(conflicts,u,v)}})}})}function visitLayer(north,south){var prevNorthPos=-1,nextNorthPos,southPos=0;_.each(south,function(v,southLookahead){if(g.node(v).dummy==="border"){var predecessors=g.predecessors(v);if(predecessors.length){nextNorthPos=g.node(predecessors[0]).order;scan(south,southPos,southLookahead,prevNorthPos,nextNorthPos);southPos=southLookahead;prevNorthPos=nextNorthPos}}scan(south,southPos,south.length,nextNorthPos,north.length)});return south}_.reduce(layering,visitLayer);return conflicts}function findOtherInnerSegmentNode(g,v){if(g.node(v).dummy){return _.find(g.predecessors(v),function(u){return g.node(u).dummy})}}function addConflict(conflicts,v,w){if(v>w){var tmp=v;v=w;w=tmp}var conflictsV=conflicts[v];if(!conflictsV){conflicts[v]=conflictsV={}}conflictsV[w]=true}function hasConflict(conflicts,v,w){if(v>w){var tmp=v;v=w;w=tmp}return _.has(conflicts[v],w)}function verticalAlignment(g,layering,conflicts,neighborFn){var root={},align={},pos={};_.each(layering,function(layer){_.each(layer,function(v,order){root[v]=v;align[v]=v;pos[v]=order})});_.each(layering,function(layer){var prevIdx=-1;_.each(layer,function(v){var ws=neighborFn(v);if(ws.length){ws=_.sortBy(ws,function(w){return pos[w]});var mp=(ws.length-1)/2;for(var i=Math.floor(mp),il=Math.ceil(mp);i<=il;++i){var w=ws[i];if(align[v]===v&&prevIdxwLabel.lim){tailLabel=wLabel;flip=true}var candidates=_.filter(g.edges(),function(edge){return flip===isDescendant(t,t.node(edge.v),tailLabel)&&flip!==isDescendant(t,t.node(edge.w),tailLabel)});return _.min(candidates,function(edge){return slack(g,edge)})}function exchangeEdges(t,g,e,f){var v=e.v,w=e.w;t.removeEdge(v,w);t.setEdge(f.v,f.w,{});initLowLimValues(t);initCutValues(t,g);updateRanks(t,g)}function updateRanks(t,g){var root=_.find(t.nodes(),function(v){return!g.node(v).parent}),vs=preorder(t,root);vs=vs.slice(1);_.each(vs,function(v){var parent=t.node(v).parent,edge=g.edge(v,parent),flipped=false;if(!edge){edge=g.edge(parent,v);flipped=true}g.node(v).rank=g.node(parent).rank+(flipped?edge.minlen:-edge.minlen)})}function isTreeEdge(tree,u,v){return tree.hasEdge(u,v)}function isDescendant(tree,vLabel,rootLabel){return rootLabel.low<=vLabel.lim&&vLabel.lim<=rootLabel.lim}},{"../graphlib":33,"../lodash":36,"../util":55,"./feasible-tree":51,"./util":54}],54:[function(require,module,exports){"use strict";var _=require("../lodash");module.exports={longestPath:longestPath,slack:slack};function longestPath(g){var visited={};function dfs(v){var label=g.node(v);if(_.has(visited,v)){return label.rank}visited[v]=true;var rank=_.min(_.map(g.outEdges(v),function(e){return dfs(e.w)-g.edge(e).minlen}));if(rank===Number.POSITIVE_INFINITY){rank=0}return label.rank=rank}_.each(g.sources(),dfs)}function slack(g,e){return g.node(e.w).rank-g.node(e.v).rank-g.edge(e).minlen}},{"../lodash":36}],55:[function(require,module,exports){"use strict";var _=require("./lodash"),Graph=require("./graphlib").Graph;module.exports={addDummyNode:addDummyNode,simplify:simplify,asNonCompoundGraph:asNonCompoundGraph,successorWeights:successorWeights,predecessorWeights:predecessorWeights,intersectRect:intersectRect,buildLayerMatrix:buildLayerMatrix,normalizeRanks:normalizeRanks,removeEmptyRanks:removeEmptyRanks,addBorderNode:addBorderNode,maxRank:maxRank,partition:partition,time:time,notime:notime};function addDummyNode(g,type,attrs,name){var v;do{v=_.uniqueId(name)}while(g.hasNode(v));attrs.dummy=type;g.setNode(v,attrs);return v}function simplify(g){var simplified=(new Graph).setGraph(g.graph());_.each(g.nodes(),function(v){simplified.setNode(v,g.node(v))});_.each(g.edges(),function(e){var simpleLabel=simplified.edge(e.v,e.w)||{weight:0,minlen:1},label=g.edge(e);simplified.setEdge(e.v,e.w,{weight:simpleLabel.weight+label.weight,minlen:Math.max(simpleLabel.minlen,label.minlen)})});return simplified}function asNonCompoundGraph(g){var simplified=new Graph({multigraph:g.isMultigraph()}).setGraph(g.graph());_.each(g.nodes(),function(v){if(!g.children(v).length){simplified.setNode(v,g.node(v))}});_.each(g.edges(),function(e){simplified.setEdge(e,g.edge(e))});return simplified}function successorWeights(g){var weightMap=_.map(g.nodes(),function(v){var sucs={};_.each(g.outEdges(v),function(e){sucs[e.w]=(sucs[e.w]||0)+g.edge(e).weight});return sucs});return _.zipObject(g.nodes(),weightMap)}function predecessorWeights(g){var weightMap=_.map(g.nodes(),function(v){var preds={};_.each(g.inEdges(v),function(e){preds[e.v]=(preds[e.v]||0)+g.edge(e).weight});return preds});return _.zipObject(g.nodes(),weightMap)}function intersectRect(rect,point){var x=rect.x;var y=rect.y;var dx=point.x-x;var dy=point.y-y;var w=rect.width/2;var h=rect.height/2;if(!dx&&!dy){throw new Error("Not possible to find intersection inside of the rectangle")}var sx,sy;if(Math.abs(dy)*w>Math.abs(dx)*h){if(dy<0){h=-h}sx=h*dx/dy;sy=h}else{if(dx<0){w=-w}sx=w;sy=w*dy/dx}return{x:x+sx,y:y+sy}}function buildLayerMatrix(g){var layering=_.map(_.range(maxRank(g)+1),function(){return[] +});_.each(g.nodes(),function(v){var node=g.node(v),rank=node.rank;if(!_.isUndefined(rank)){layering[rank][node.order]=v}});return layering}function normalizeRanks(g){var min=_.min(_.map(g.nodes(),function(v){return g.node(v).rank}));_.each(g.nodes(),function(v){var node=g.node(v);if(_.has(node,"rank")){node.rank-=min}})}function removeEmptyRanks(g){var offset=_.min(_.map(g.nodes(),function(v){return g.node(v).rank}));var layers=[];_.each(g.nodes(),function(v){var rank=g.node(v).rank-offset;if(!_.has(layers,rank)){layers[rank]=[]}layers[rank].push(v)});var delta=0,nodeRankFactor=g.graph().nodeRankFactor;_.each(layers,function(vs,i){if(_.isUndefined(vs)&&i%nodeRankFactor!==0){--delta}else if(delta){_.each(vs,function(v){g.node(v).rank+=delta})}})}function 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_=require("../lodash");module.exports=components;function components(g){var visited={},cmpts=[],cmpt;function dfs(v){if(_.has(visited,v))return;visited[v]=true;cmpt.push(v);_.each(g.successors(v),dfs);_.each(g.predecessors(v),dfs)}_.each(g.nodes(),function(v){cmpt=[];dfs(v);if(cmpt.length){cmpts.push(cmpt)}});return cmpts}},{"../lodash":75}],59:[function(require,module,exports){var _=require("../lodash");module.exports=dfs;function dfs(g,vs,order){if(!_.isArray(vs)){vs=[vs]}var acc=[],visited={};_.each(vs,function(v){if(!g.hasNode(v)){throw new Error("Graph does not have node: "+v)}doDfs(g,v,order==="post",visited,acc)});return acc}function doDfs(g,v,postorder,visited,acc){if(!_.has(visited,v)){visited[v]=true;if(!postorder){acc.push(v)}_.each(g.neighbors(v),function(w){doDfs(g,w,postorder,visited,acc)});if(postorder){acc.push(v)}}}},{"../lodash":75}],60:[function(require,module,exports){var dijkstra=require("./dijkstra"),_=require("../lodash");module.exports=dijkstraAll;function 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").addClass(errClass).css("position", "absolute") + .css("top", el.offsetTop) + .css("left", el.offsetLeft) + // setting width can push out the page size, forcing otherwise + // unnecessary scrollbars to appear and making it impossible for + // the element to shrink; so use max-width instead + .css("maxWidth", el.offsetWidth) + .css("height", el.offsetHeight); + errorDiv.text(err.message); + $el.after(errorDiv); + + // Really dumb way to keep the size/position of the error in sync with + // the parent element as the window is resized or whatever. + var intId = setInterval(function() { + if (!errorDiv[0].parentElement) { + clearInterval(intId); + return; + } + errorDiv + .css("top", el.offsetTop) + .css("left", el.offsetLeft) + .css("maxWidth", el.offsetWidth) + .css("height", el.offsetHeight); + }, 500); + } + } + }, + clearError: function(el) { + var $el = $(el); + var display = $el.data("restore-display-mode"); + $el.data("restore-display-mode", null); + + if (display === "inline" || display === "inline-block") { + if (display) + $el.css("display", display); + $(el.nextSibling).filter(".htmlwidgets-error").remove(); + } else if (display === "block"){ + $el.css("visibility", "inherit"); + $(el.nextSibling).filter(".htmlwidgets-error").remove(); + } + }, + sizing: {} + }; + + // Called by widget bindings to register a new type of widget. The definition + // object can contain the following properties: + // - name (required) - A string indicating the binding name, which will be + // used by default as the CSS classname to look for. + // - initialize (optional) - A function(el) that will be called once per + // widget element; if a value is returned, it will be passed as the third + // value to renderValue. + // - renderValue (required) - A function(el, data, initValue) that will be + // called with data. Static contexts will cause this to be called once per + // element; Shiny apps will cause this to be called multiple times per + // element, as the data changes. + window.HTMLWidgets.widget = function(definition) { + if (!definition.name) { + throw new Error("Widget must have a name"); + } + if (!definition.type) { + throw new Error("Widget must have a type"); + } + // Currently we only support output widgets + if (definition.type !== "output") { + throw new Error("Unrecognized widget type '" + definition.type + "'"); + } + // TODO: Verify that .name is a valid CSS classname + + // Support new-style instance-bound definitions. Old-style class-bound + // definitions have one widget "object" per widget per type/class of + // widget; the renderValue and resize methods on such widget objects + // take el and instance arguments, because the widget object can't + // store them. New-style instance-bound definitions have one widget + // object per widget instance; the definition that's passed in doesn't + // provide renderValue or resize methods at all, just the single method + // factory(el, width, height) + // which returns an object that has renderValue(x) and resize(w, h). + // This enables a far more natural programming style for the widget + // author, who can store per-instance state using either OO-style + // instance fields or functional-style closure variables (I guess this + // is in contrast to what can only be called C-style pseudo-OO which is + // what we required before). + if (definition.factory) { + definition = createLegacyDefinitionAdapter(definition); + } + + if (!definition.renderValue) { + throw new Error("Widget must have a renderValue function"); + } + + // For static rendering (non-Shiny), use a simple widget registration + // scheme. We also use this scheme for Shiny apps/documents that also + // contain static widgets. + window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || []; + // Merge defaults into the definition; don't mutate the original definition. + var staticBinding = extend({}, defaults, definition); + overrideMethod(staticBinding, "find", function(superfunc) { + return function(scope) { + var results = superfunc(scope); + // Filter out Shiny outputs, we only want the static kind + return filterByClass(results, "html-widget-output", false); + }; + }); + window.HTMLWidgets.widgets.push(staticBinding); + + if (shinyMode) { + // Shiny is running. Register the definition with an output binding. + // The definition itself will not be the output binding, instead + // we will make an output binding object that delegates to the + // definition. This is because we foolishly used the same method + // name (renderValue) for htmlwidgets definition and Shiny bindings + // but they actually have quite different semantics (the Shiny + // bindings receive data that includes lots of metadata that it + // strips off before calling htmlwidgets renderValue). We can't + // just ignore the difference because in some widgets it's helpful + // to call this.renderValue() from inside of resize(), and if + // we're not delegating, then that call will go to the Shiny + // version instead of the htmlwidgets version. + + // Merge defaults with definition, without mutating either. + var bindingDef = extend({}, defaults, definition); + + // This object will be our actual Shiny binding. + var shinyBinding = new Shiny.OutputBinding(); + + // With a few exceptions, we'll want to simply use the bindingDef's + // version of methods if they are available, otherwise fall back to + // Shiny's defaults. NOTE: If Shiny's output bindings gain additional + // methods in the future, and we want them to be overrideable by + // HTMLWidget binding definitions, then we'll need to add them to this + // list. + delegateMethod(shinyBinding, bindingDef, "getId"); + delegateMethod(shinyBinding, bindingDef, "onValueChange"); + delegateMethod(shinyBinding, bindingDef, "onValueError"); + delegateMethod(shinyBinding, bindingDef, "renderError"); + delegateMethod(shinyBinding, bindingDef, "clearError"); + delegateMethod(shinyBinding, bindingDef, "showProgress"); + + // The find, renderValue, and resize are handled differently, because we + // want to actually decorate the behavior of the bindingDef methods. + + shinyBinding.find = function(scope) { + var results = bindingDef.find(scope); + + // Only return elements that are Shiny outputs, not static ones + var dynamicResults = results.filter(".html-widget-output"); + + // It's possible that whatever caused Shiny to think there might be + // new dynamic outputs, also caused there to be new static outputs. + // Since there might be lots of different htmlwidgets bindings, we + // schedule execution for later--no need to staticRender multiple + // times. + if (results.length !== dynamicResults.length) + scheduleStaticRender(); + + return dynamicResults; + }; + + // Wrap renderValue to handle initialization, which unfortunately isn't + // supported natively by Shiny at the time of this writing. + + shinyBinding.renderValue = function(el, data) { + // Resolve strings marked as javascript literals to objects + if (!(data.evals instanceof Array)) data.evals = [data.evals]; + for (var i = 0; data.evals && i < data.evals.length; i++) { + window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]); + } + if (!bindingDef.renderOnNullValue) { + if (data.x === null) { + el.style.visibility = "hidden"; + return; + } else { + el.style.visibility = "inherit"; + } + } + if (!elementData(el, "initialized")) { + initSizing(el); + + elementData(el, "initialized", true); + if (bindingDef.initialize) { + var result = bindingDef.initialize(el, el.offsetWidth, + el.offsetHeight); + elementData(el, "init_result", result); + } + } + Shiny.renderDependencies(data.deps); + bindingDef.renderValue(el, data.x, elementData(el, "init_result")); + evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]); + }; + + // Only override resize if bindingDef implements it + if (bindingDef.resize) { + shinyBinding.resize = function(el, width, height) { + // Shiny can call resize before initialize/renderValue have been + // called, which doesn't make sense for widgets. + if (elementData(el, "initialized")) { + bindingDef.resize(el, width, height, elementData(el, "init_result")); + } + }; + } + + Shiny.outputBindings.register(shinyBinding, bindingDef.name); + } + }; + + var scheduleStaticRenderTimerId = null; + function scheduleStaticRender() { + if (!scheduleStaticRenderTimerId) { + scheduleStaticRenderTimerId = setTimeout(function() { + scheduleStaticRenderTimerId = null; + window.HTMLWidgets.staticRender(); + }, 1); + } + } + + // Render static widgets after the document finishes loading + // Statically render all elements that are of this widget's class + window.HTMLWidgets.staticRender = function() { + var bindings = window.HTMLWidgets.widgets || []; + forEach(bindings, function(binding) { + var matches = binding.find(document.documentElement); + forEach(matches, function(el) { + var sizeObj = initSizing(el, binding); + + if (hasClass(el, "html-widget-static-bound")) + return; + el.className = el.className + " html-widget-static-bound"; + + var initResult; + if (binding.initialize) { + initResult = binding.initialize(el, + sizeObj ? sizeObj.getWidth() : el.offsetWidth, + sizeObj ? sizeObj.getHeight() : el.offsetHeight + ); + elementData(el, "init_result", initResult); + } + + if (binding.resize) { + var lastSize = {}; + var resizeHandler = function(e) { + var size = { + w: sizeObj ? sizeObj.getWidth() : el.offsetWidth, + h: sizeObj ? sizeObj.getHeight() : el.offsetHeight + }; + if (size.w === 0 && size.h === 0) + return; + if (size.w === lastSize.w && size.h === lastSize.h) + return; + lastSize = size; + binding.resize(el, size.w, size.h, initResult); + }; + + on(window, "resize", resizeHandler); + + // This is needed for cases where we're running in a Shiny + // app, but the widget itself is not a Shiny output, but + // rather a simple static widget. One example of this is + // an rmarkdown document that has runtime:shiny and widget + // that isn't in a render function. Shiny only knows to + // call resize handlers for Shiny outputs, not for static + // widgets, so we do it ourselves. + if (window.jQuery) { + window.jQuery(document).on( + "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets", + resizeHandler + ); + window.jQuery(document).on( + "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets", + resizeHandler + ); + } + + // This is needed for the specific case of ioslides, which + // flips slides between display:none and display:block. + // Ideally we would not have to have ioslide-specific code + // here, but rather have ioslides raise a generic event, + // but the rmarkdown package just went to CRAN so the + // window to getting that fixed may be long. + if (window.addEventListener) { + // It's OK to limit this to window.addEventListener + // browsers because ioslides itself only supports + // such browsers. + on(document, "slideenter", resizeHandler); + on(document, "slideleave", resizeHandler); + } + } + + var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']"); + if (scriptData) { + var data = JSON.parse(scriptData.textContent || scriptData.text); + // Resolve strings marked as javascript literals to objects + if (!(data.evals instanceof Array)) data.evals = [data.evals]; + for (var k = 0; data.evals && k < data.evals.length; k++) { + window.HTMLWidgets.evaluateStringMember(data.x, data.evals[k]); + } + binding.renderValue(el, data.x, initResult); + evalAndRun(data.jsHooks.render, initResult, [el, data.x]); + } + }); + }); + + invokePostRenderHandlers(); + } + + // Wait until after the document has loaded to render the widgets. + if (document.addEventListener) { + document.addEventListener("DOMContentLoaded", function() { + document.removeEventListener("DOMContentLoaded", arguments.callee, false); + window.HTMLWidgets.staticRender(); + }, false); + } else if (document.attachEvent) { + document.attachEvent("onreadystatechange", function() { + if (document.readyState === "complete") { + document.detachEvent("onreadystatechange", arguments.callee); + window.HTMLWidgets.staticRender(); + } + }); + } + + + window.HTMLWidgets.getAttachmentUrl = function(depname, key) { + // If no key, default to the first item + if (typeof(key) === "undefined") + key = 1; + + var link = document.getElementById(depname + "-" + key + "-attachment"); + if (!link) { + throw new Error("Attachment " + depname + "/" + key + " not found in document"); + } + return link.getAttribute("href"); + }; + + window.HTMLWidgets.dataframeToD3 = function(df) { + var names = []; + var length; + for (var name in df) { + if (df.hasOwnProperty(name)) + names.push(name); + if (typeof(df[name]) !== "object" || typeof(df[name].length) === "undefined") { + throw new Error("All fields must be arrays"); + } else if (typeof(length) !== "undefined" && length !== df[name].length) { + throw new Error("All fields must be arrays of the same length"); + } + length = df[name].length; + } + var results = []; + var item; + for (var row = 0; row < length; row++) { + item = {}; + for (var col = 0; col < names.length; col++) { + item[names[col]] = df[names[col]][row]; + } + results.push(item); + } + return results; + }; + + window.HTMLWidgets.transposeArray2D = function(array) { + if (array.length === 0) return array; + var newArray = array[0].map(function(col, i) { + return array.map(function(row) { + return row[i] + }) + }); + return newArray; + }; + // Split value at splitChar, but allow splitChar to be escaped + // using escapeChar. Any other characters escaped by escapeChar + // will be included as usual (including escapeChar itself). + function splitWithEscape(value, splitChar, escapeChar) { + var results = []; + var escapeMode = false; + var currentResult = ""; + for (var pos = 0; pos < value.length; pos++) { + if (!escapeMode) { + if (value[pos] === splitChar) { + results.push(currentResult); + currentResult = ""; + } else if (value[pos] === escapeChar) { + escapeMode = true; + } else { + currentResult += value[pos]; + } + } else { + currentResult += value[pos]; + escapeMode = false; + } + } + if (currentResult !== "") { + results.push(currentResult); + } + return results; + } + // Function authored by Yihui/JJ Allaire + window.HTMLWidgets.evaluateStringMember = function(o, member) { + var parts = splitWithEscape(member, '.', '\\'); + for (var i = 0, l = parts.length; i < l; i++) { + var part = parts[i]; + // part may be a character or 'numeric' member name + if (o !== null && typeof o === "object" && part in o) { + if (i == (l - 1)) { // if we are at the end of the line then evalulate + if (typeof o[part] === "string") + o[part] = eval("(" + o[part] + ")"); + } else { // otherwise continue to next embedded object + o = o[part]; + } + } + } + }; + + // Retrieve the HTMLWidget instance (i.e. the return value of an + // HTMLWidget binding's initialize() or factory() function) + // associated with an element, or null if none. + window.HTMLWidgets.getInstance = function(el) { + return elementData(el, "init_result"); + }; + + // Finds the first element in the scope that matches the selector, + // and returns the HTMLWidget instance (i.e. the return value of + // an HTMLWidget binding's initialize() or factory() function) + // associated with that element, if any. If no element matches the + // selector, or the first matching element has no HTMLWidget + // instance associated with it, then null is returned. + // + // The scope argument is optional, and defaults to window.document. + window.HTMLWidgets.find = function(scope, selector) { + if (arguments.length == 1) { + selector = scope; + scope = document; + } + + var el = scope.querySelector(selector); + if (el === null) { + return null; + } else { + return window.HTMLWidgets.getInstance(el); + } + }; + + // Finds all elements in the scope that match the selector, and + // returns the HTMLWidget instances (i.e. the return values of + // an HTMLWidget binding's initialize() or factory() function) + // associated with the elements, in an array. If elements that + // match the selector don't have an associated HTMLWidget + // instance, the returned array will contain nulls. + // + // The scope argument is optional, and defaults to window.document. + window.HTMLWidgets.findAll = function(scope, selector) { + if (arguments.length == 1) { + selector = scope; + scope = document; + } + + var nodes = scope.querySelectorAll(selector); + var results = []; + for (var i = 0; i < nodes.length; i++) { + results.push(window.HTMLWidgets.getInstance(nodes[i])); + } + return results; + }; + + var postRenderHandlers = []; + function invokePostRenderHandlers() { + while (postRenderHandlers.length) { + var handler = postRenderHandlers.shift(); + if (handler) { + handler(); + } + } + } + + // Register the given callback function to be invoked after the + // next time static widgets are rendered. + window.HTMLWidgets.addPostRenderHandler = function(callback) { + postRenderHandlers.push(callback); + }; + + // Takes a new-style instance-bound definition, and returns an + // old-style class-bound definition. This saves us from having + // to rewrite all the logic in this file to accomodate both + // types of definitions. + function createLegacyDefinitionAdapter(defn) { + var result = { + name: defn.name, + type: defn.type, + initialize: function(el, width, height) { + return defn.factory(el, width, height); + }, + renderValue: function(el, x, instance) { + return instance.renderValue(x); + }, + resize: function(el, width, height, instance) { + return instance.resize(width, height); + } + }; + + if (defn.find) + result.find = defn.find; + if (defn.renderError) + result.renderError = defn.renderError; + if (defn.clearError) + result.clearError = defn.clearError; + + return result; + } +})(); + diff --git a/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/LICENSE b/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/LICENSE new file mode 100644 index 0000000..faae921 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/LICENSE @@ -0,0 +1,22 @@ +The MIT License (MIT) + +Copyright (c) 2014 Knut Sveidqvist + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + diff --git a/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/dist/mermaid.css b/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/dist/mermaid.css new file mode 100644 index 0000000..d169f84 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/dist/mermaid.css @@ -0,0 +1,275 @@ +/* Flowchart variables */ +/* Sequence Diagram variables */ +/* Gantt chart variables */ +.mermaid .label { + color: #333333; + font-weight: 400; +} + +.mermaid .node rect, +.node circle, +.mermaid .node ellipse, +.mermaid .node polygon { + fill: #ECECFF; + stroke: #CCCCFF; + stroke-width: 1px; +} +.mermaid .edgePath .path { + stroke: #333333; +} + +.mermaid g .edgeLabel { + background-color: white; +} + +.mermaid .cluster rect { + fill: #ffffde !important; + rx: 4 !important; + stroke: #aaaa33 !important; + stroke-width: 1px !important; +} +.mermaid .cluster text { + fill: #333333; +} +.mermaid .actor { + stroke: #CCCCFF; + fill: #ECECFF; +} +.mermaid text.actor { + fill: black; + stroke: none; +} +.mermaid .actor-line { + stroke: grey; +} +.mermaid .messageLine0 { + stroke-width: 1.5; + stroke-dasharray: "2 2"; + stroke: #333333; +} +.mermaid .messageLine1 { + stroke-width: 1.5; + stroke-dasharray: "2 2"; + stroke: #333333; +} +.mermaid #arrowhead { + fill: #333333; +} +.mermaid #crosshead path { + fill: #333333 !important; + stroke: #333333 !important; +} +.mermaid .messageText { + fill: #333333; + stroke: none; +} +.mermaid .labelBox { + stroke: #CCCCFF; + fill: #ECECFF; +} +.mermaid .labelText { + fill: black; + stroke: none; +} +.mermaid .loopText { + fill: black; + stroke: none; +} +.mermaid .loopLine { + stroke-width: 2; + stroke-dasharray: "2 2"; + stroke: #CCCCFF; +} +.mermaid .note { + stroke: #aaaa33; + fill: #fff5ad; +} +.mermaid .noteText { + fill: black; + stroke: none; + font-family: 'trebuchet ms', verdana, arial; + font-size: 14px; +} +/** Section styling */ +.mermaid .section { + stroke: none; + opacity: 0.2; +} +.mermaid .section0 { + fill: rgba(102, 102, 255, 0.49); +} +.mermaid .section2 { + fill: #fff400; +} +.mermaid .section1, +.mermaid .section3 { + fill: white; + opacity: 0.2; +} +.mermaid .sectionTitle0 { + fill: #333333; +} +.mermaid .sectionTitle1 { + fill: #333333; +} +.mermaid .sectionTitle2 { + fill: #333333; +} +.mermaid .sectionTitle3 { + fill: #333333; +} +.mermaid .sectionTitle { + text-anchor: start; + font-size: 11px; + text-height: 14px; +} +/* Grid and axis */ +.mermaid .grid .tick { + stroke: lightgrey; + opacity: 0.3; + shape-rendering: crispEdges; +} +.mermaid .grid path { + stroke-width: 0; +} +/* Today line */ +.mermaid .today { + fill: none; + stroke: red; + stroke-width: 2px; +} +/* Task styling */ +/* Default task */ +.mermaid .task { + stroke-width: 2; +} +.mermaid .taskText { + text-anchor: middle; + font-size: 11px; +} +.mermaid .taskTextOutsideRight { + fill: black; + text-anchor: start; + font-size: 11px; +} +.mermaid .taskTextOutsideLeft { + fill: black; + text-anchor: end; + font-size: 11px; +} +/* Specific task settings for the sections*/ +.mermaid .taskText0, +.mermaid .taskText1, +.mermaid .taskText2, +.mermaid .taskText3 { + fill: white; +} +.mermaid .task0, +.mermaid .task1, +.mermaid .task2, +.mermaid .task3 { + fill: #8a90dd; + stroke: #534fbc; +} +.mermaid .taskTextOutside0, +.mermaid .taskTextOutside2 { + fill: black; +} +.mermaid .taskTextOutside1, +.mermaid .taskTextOutside3 { + fill: black; +} +/* Active task */ +.mermaid .active0, +.mermaid .active1, +.mermaid .active2, +.mermaid .active3 { + fill: #bfc7ff; + stroke: #534fbc; +} +.mermaid .activeText0, +.mermaid .activeText1, +.mermaid .activeText2, +.mermaid .activeText3 { + fill: black !important; +} +/* Completed task */ +.mermaid .done0, 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black !important; +} +.mermaid .titleText { + text-anchor: middle; + font-size: 18px; + fill: black; +} +/* + + +*/ +.node text { + font-family: 'trebuchet ms', verdana, arial; + font-size: 14px; +} +div.mermaidTooltip { + position: absolute; + text-align: center; + max-width: 200px; + padding: 2px; + font-family: 'trebuchet ms', verdana, arial; + font-size: 12px; + background: #ffffde; + border: 1px solid #aaaa33; + border-radius: 2px; + pointer-events: none; + z-index: 100; +} diff --git a/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/dist/mermaid.slim.min.js b/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/dist/mermaid.slim.min.js new file mode 100644 index 0000000..195dac1 --- /dev/null +++ b/docs/articles/sd_iv_rich_pkpd_files/mermaid-0.3.0/dist/mermaid.slim.min.js @@ -0,0 +1,12 @@ +!function(t){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=t();else if("function"==typeof define&&define.amd)define([],t);else{var e;"undefined"!=typeof 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╔",boxh:"─",boxH:"═",boxhd:"┬",boxHd:"╤",boxhD:"╥",boxHD:"╦",boxhu:"┴",boxHu:"╧",boxhU:"╨",boxHU:"╩",boxminus:"⊟",boxplus:"⊞",boxtimes:"⊠",boxul:"┘",boxuL:"╛",boxUl:"╜",boxUL:"╝",boxur:"└",boxuR:"╘",boxUr:"╙",boxUR:"╚",boxv:"│",boxV:"║",boxvh:"┼",boxvH:"╪",boxVh:"╫",boxVH:"╬",boxvl:"┤",boxvL:"╡",boxVl:"╢",boxVL:"╣",boxvr:"├",boxvR:"╞",boxVr:"╟",boxVR:"╠",bprime:"‵",breve:"˘",Breve:"˘",brvbar:"¦",bscr:"𝒷",Bscr:"ℬ",bsemi:"⁏",bsim:"∽",bsime:"⋍",bsolb:"⧅",bsol:"\\",bsolhsub:"⟈",bull:"•",bullet:"•",bump:"≎",bumpE:"⪮",bumpe:"≏",Bumpeq:"≎",bumpeq:"≏",Cacute:"Ć",cacute:"ć",capand:"⩄",capbrcup:"⩉",capcap:"⩋",cap:"∩",Cap:"⋒",capcup:"⩇",capdot:"⩀",CapitalDifferentialD:"ⅅ",caps:"∩︀",caret:"⁁",caron:"ˇ",Cayleys:"ℭ",ccaps:"⩍",Ccaron:"Č",ccaron:"č",Ccedil:"Ç",ccedil:"ç",Ccirc:"Ĉ",ccirc:"ĉ",Cconint:"∰",ccups:"⩌",ccupssm:"⩐",Cdot:"Ċ",cdot:"ċ",cedil:"¸",Cedilla:"¸",cemptyv:"⦲",cent:"¢",centerdot:"·",CenterDot:"·",cfr:"𝔠",Cfr:"ℭ",CHcy:"Ч",chcy:"ч",check:"✓",checkmark:"✓",Chi:"Χ",chi:"χ",circ:"ˆ",circeq:"≗",circlearrowleft:"↺",circlearrowright:"↻",circledast:"⊛",circledcirc:"⊚",circleddash:"⊝",CircleDot:"⊙",circledR:"®",circledS:"Ⓢ",CircleMinus:"⊖",CirclePlus:"⊕",CircleTimes:"⊗",cir:"○",cirE:"⧃",cire:"≗",cirfnint:"⨐",cirmid:"⫯",cirscir:"⧂",ClockwiseContourIntegral:"∲",CloseCurlyDoubleQuote:"”",CloseCurlyQuote:"’",clubs:"♣",clubsuit:"♣",colon:":",Colon:"∷",Colone:"⩴",colone:"≔",coloneq:"≔",comma:",",commat:"@",comp:"∁",compfn:"∘",complement:"∁",complexes:"ℂ",cong:"≅",congdot:"⩭",Congruent:"≡",conint:"∮",Conint:"∯",ContourIntegral:"∮",copf:"𝕔",Copf:"ℂ",coprod:"∐",Coproduct:"∐",copy:"©",COPY:"©",copysr:"℗",CounterClockwiseContourIntegral:"∳",crarr:"↵",cross:"✗",Cross:"⨯",Cscr:"𝒞",cscr:"𝒸",csub:"⫏",csube:"⫑",csup:"⫐",csupe:"⫒",ctdot:"⋯",cudarrl:"⤸",cudarrr:"⤵",cuepr:"⋞",cuesc:"⋟",cularr:"↶",cularrp:"⤽",cupbrcap:"⩈",cupcap:"⩆",CupCap:"≍",cup:"∪",Cup:"⋓",cupcup:"⩊",cupdot:"⊍",cupor:"⩅",cups:"∪︀",curarr:"↷",curarrm:"⤼",curlyeqprec:"⋞",curlyeqsucc:"⋟",curlyvee:"⋎",curlywedge:"⋏",curren:"¤",curvearrowleft:"↶",curvearrowright:"↷",cuvee:"⋎",cuwed:"⋏",cwconint:"∲",cwint:"∱",cylcty:"⌭",dagger:"†",Dagger:"‡",daleth:"ℸ",darr:"↓",Darr:"↡",dArr:"⇓",dash:"‐",Dashv:"⫤",dashv:"⊣",dbkarow:"⤏",dblac:"˝",Dcaron:"Ď",dcaron:"ď",Dcy:"Д",dcy:"д",ddagger:"‡",ddarr:"⇊",DD:"ⅅ",dd:"ⅆ",DDotrahd:"⤑",ddotseq:"⩷",deg:"°",Del:"∇",Delta:"Δ",delta:"δ",demptyv:"⦱",dfisht:"⥿",Dfr:"𝔇",dfr:"𝔡",dHar:"⥥",dharl:"⇃",dharr:"⇂",DiacriticalAcute:"´",DiacriticalDot:"˙",DiacriticalDoubleAcute:"˝",DiacriticalGrave:"`",DiacriticalTilde:"˜",diam:"⋄",diamond:"⋄",Diamond:"⋄",diamondsuit:"♦",diams:"♦",die:"¨",DifferentialD:"ⅆ",digamma:"ϝ",disin:"⋲",div:"÷",divide:"÷",divideontimes:"⋇",divonx:"⋇",DJcy:"Ђ",djcy:"ђ",dlcorn:"⌞",dlcrop:"⌍",dollar:"$",Dopf:"𝔻",dopf:"𝕕",Dot:"¨",dot:"˙",DotDot:"⃜",doteq:"≐",doteqdot:"≑",DotEqual:"≐",dotminus:"∸",dotplus:"∔",dotsquare:"⊡",doublebarwedge:"⌆",DoubleContourIntegral:"∯",DoubleDot:"¨",DoubleDownArrow:"⇓",DoubleLeftArrow:"⇐",DoubleLeftRightArrow:"⇔",DoubleLeftTee:"⫤",DoubleLongLeftArrow:"⟸",DoubleLongLeftRightArrow:"⟺",DoubleLongRightArrow:"⟹",DoubleRightArrow:"⇒",DoubleRightTee:"⊨",DoubleUpArrow:"⇑",DoubleUpDownArrow:"⇕",DoubleVerticalBar:"∥",DownArrowBar:"⤓",downarrow:"↓",DownArrow:"↓",Downarrow:"⇓",DownArrowUpArrow:"⇵",DownBreve:"̑",downdownarrows:"⇊",downharpoonleft:"⇃",downharpoonright:"⇂",DownLeftRightVector:"⥐",DownLeftTeeVector:"⥞",DownLeftVectorBar:"⥖",DownLeftVector:"↽",DownRightTeeVector:"⥟",DownRightVectorBar:"⥗",DownRightVector:"⇁",DownTeeArrow:"↧",DownTee:"⊤",drbkarow:"⤐",drcorn:"⌟",drcrop:"⌌",Dscr:"𝒟",dscr:"𝒹",DScy:"Ѕ",dscy:"ѕ",dsol:"⧶",Dstrok:"Đ",dstrok:"đ",dtdot:"⋱",dtri:"▿",dtrif:"▾",duarr:"⇵",duhar:"⥯",dwangle:"⦦",DZcy:"Џ",dzcy:"џ",dzigrarr:"⟿",Eacute:"É",eacute:"é",easter:"⩮",Ecaron:"Ě",ecaron:"ě",Ecirc:"Ê",ecirc:"ê",ecir:"≖",ecolon:"≕",Ecy:"Э",ecy:"э",eDDot:"⩷",Edot:"Ė",edot:"ė",eDot:"≑",ee:"ⅇ",efDot:"≒",Efr:"𝔈",efr:"𝔢",eg:"⪚",Egrave:"È",egrave:"è",egs:"⪖",egsdot:"⪘",el:"⪙",Element:"∈",elinters:"⏧",ell:"ℓ",els:"⪕",elsdot:"⪗",Emacr:"Ē",emacr:"ē",empty:"∅",emptyset:"∅",EmptySmallSquare:"◻",emptyv:"∅",EmptyVerySmallSquare:"▫",emsp13:" ",emsp14:" ",emsp:" ",ENG:"Ŋ",eng:"ŋ",ensp:" ",Eogon:"Ę",eogon:"ę",Eopf:"𝔼",eopf:"𝕖",epar:"⋕",eparsl:"⧣",eplus:"⩱",epsi:"ε",Epsilon:"Ε",epsilon:"ε",epsiv:"ϵ",eqcirc:"≖",eqcolon:"≕",eqsim:"≂",eqslantgtr:"⪖",eqslantless:"⪕",Equal:"⩵",equals:"=",EqualTilde:"≂",equest:"≟",Equilibrium:"⇌",equiv:"≡",equivDD:"⩸",eqvparsl:"⧥",erarr:"⥱",erDot:"≓",escr:"ℯ",Escr:"ℰ",esdot:"≐",Esim:"⩳",esim:"≂",Eta:"Η",eta:"η",ETH:"Ð",eth:"ð",Euml:"Ë",euml:"ë",euro:"€",excl:"!",exist:"∃",Exists:"∃",expectation:"ℰ",exponentiale:"ⅇ",ExponentialE:"ⅇ",fallingdotseq:"≒",Fcy:"Ф",fcy:"ф",female:"♀",ffilig:"ffi",fflig:"ff",ffllig:"ffl",Ffr:"𝔉",ffr:"𝔣",filig:"fi",FilledSmallSquare:"◼",FilledVerySmallSquare:"▪",fjlig:"fj",flat:"♭",fllig:"fl",fltns:"▱",fnof:"ƒ",Fopf:"𝔽",fopf:"𝕗",forall:"∀",ForAll:"∀",fork:"⋔",forkv:"⫙",Fouriertrf:"ℱ",fpartint:"⨍",frac12:"½",frac13:"⅓",frac14:"¼",frac15:"⅕",frac16:"⅙",frac18:"⅛",frac23:"⅔",frac25:"⅖",frac34:"¾",frac35:"⅗",frac38:"⅜",frac45:"⅘",frac56:"⅚",frac58:"⅝",frac78:"⅞",frasl:"⁄",frown:"⌢",fscr:"𝒻",Fscr:"ℱ",gacute:"ǵ",Gamma:"Γ",gamma:"γ",Gammad:"Ϝ",gammad:"ϝ",gap:"⪆",Gbreve:"Ğ",gbreve:"ğ",Gcedil:"Ģ",Gcirc:"Ĝ",gcirc:"ĝ",Gcy:"Г",gcy:"г",Gdot:"Ġ",gdot:"ġ",ge:"≥",gE:"≧",gEl:"⪌",gel:"⋛",geq:"≥",geqq:"≧",geqslant:"⩾",gescc:"⪩",ges:"⩾",gesdot:"⪀",gesdoto:"⪂",gesdotol:"⪄",gesl:"⋛︀",gesles:"⪔",Gfr:"𝔊",gfr:"𝔤",gg:"≫",Gg:"⋙",ggg:"⋙",gimel:"ℷ",GJcy:"Ѓ",gjcy:"ѓ",gla:"⪥",gl:"≷",glE:"⪒",glj:"⪤",gnap:"⪊",gnapprox:"⪊",gne:"⪈",gnE:"≩",gneq:"⪈",gneqq:"≩",gnsim:"⋧",Gopf:"𝔾",gopf:"𝕘",grave:"`",GreaterEqual:"≥",GreaterEqualLess:"⋛",GreaterFullEqual:"≧",GreaterGreater:"⪢",GreaterLess:"≷",GreaterSlantEqual:"⩾",GreaterTilde:"≳",Gscr:"𝒢",gscr:"ℊ",gsim:"≳",gsime:"⪎",gsiml:"⪐",gtcc:"⪧",gtcir:"⩺",gt:">",GT:">",Gt:"≫",gtdot:"⋗",gtlPar:"⦕",gtquest:"⩼",gtrapprox:"⪆",gtrarr:"⥸",gtrdot:"⋗",gtreqless:"⋛",gtreqqless:"⪌",gtrless:"≷",gtrsim:"≳",gvertneqq:"≩︀",gvnE:"≩︀",Hacek:"ˇ",hairsp:" ",half:"½",hamilt:"ℋ",HARDcy:"Ъ",hardcy:"ъ",harrcir:"⥈",harr:"↔",hArr:"⇔",harrw:"↭",Hat:"^",hbar:"ℏ",Hcirc:"Ĥ",hcirc:"ĥ",hearts:"♥",heartsuit:"♥",hellip:"…",hercon:"⊹",hfr:"𝔥",Hfr:"ℌ",HilbertSpace:"ℋ",hksearow:"⤥",hkswarow:"⤦",hoarr:"⇿",homtht:"∻",hookleftarrow:"↩",hookrightarrow:"↪",hopf:"𝕙",Hopf:"ℍ",horbar:"―",HorizontalLine:"─",hscr:"𝒽",Hscr:"ℋ",hslash:"ℏ",Hstrok:"Ħ",hstrok:"ħ",HumpDownHump:"≎",HumpEqual:"≏",hybull:"⁃",hyphen:"‐",Iacute:"Í",iacute:"í",ic:"⁣",Icirc:"Î",icirc:"î",Icy:"И",icy:"и",Idot:"İ",IEcy:"Е",iecy:"е",iexcl:"¡",iff:"⇔",ifr:"𝔦",Ifr:"ℑ",Igrave:"Ì",igrave:"ì",ii:"ⅈ",iiiint:"⨌",iiint:"∭",iinfin:"⧜",iiota:"℩",IJlig:"IJ",ijlig:"ij",Imacr:"Ī",imacr:"ī",image:"ℑ",ImaginaryI:"ⅈ",imagline:"ℐ",imagpart:"ℑ",imath:"ı",Im:"ℑ",imof:"⊷",imped:"Ƶ",Implies:"⇒",incare:"℅","in":"∈",infin:"∞",infintie:"⧝",inodot:"ı",intcal:"⊺","int":"∫",Int:"∬",integers:"ℤ",Integral:"∫",intercal:"⊺",Intersection:"⋂",intlarhk:"⨗",intprod:"⨼",InvisibleComma:"⁣",InvisibleTimes:"⁢",IOcy:"Ё",iocy:"ё",Iogon:"Į",iogon:"į",Iopf:"𝕀",iopf:"𝕚",Iota:"Ι",iota:"ι",iprod:"⨼",iquest:"¿",iscr:"𝒾",Iscr:"ℐ",isin:"∈",isindot:"⋵",isinE:"⋹",isins:"⋴",isinsv:"⋳",isinv:"∈",it:"⁢",Itilde:"Ĩ",itilde:"ĩ",Iukcy:"І",iukcy:"і",Iuml:"Ï",iuml:"ï",Jcirc:"Ĵ",jcirc:"ĵ",Jcy:"Й",jcy:"й",Jfr:"𝔍",jfr:"𝔧",jmath:"ȷ",Jopf:"𝕁",jopf:"𝕛",Jscr:"𝒥",jscr:"𝒿",Jsercy:"Ј",jsercy:"ј",Jukcy:"Є",jukcy:"є",Kappa:"Κ",kappa:"κ",kappav:"ϰ",Kcedil:"Ķ",kcedil:"ķ",Kcy:"К",kcy:"к",Kfr:"𝔎",kfr:"𝔨",kgreen:"ĸ",KHcy:"Х",khcy:"х",KJcy:"Ќ",kjcy:"ќ",Kopf:"𝕂",kopf:"𝕜",Kscr:"𝒦",kscr:"𝓀",lAarr:"⇚",Lacute:"Ĺ",lacute:"ĺ",laemptyv:"⦴",lagran:"ℒ",Lambda:"Λ",lambda:"λ",lang:"⟨",Lang:"⟪",langd:"⦑",langle:"⟨",lap:"⪅",Laplacetrf:"ℒ",laquo:"«",larrb:"⇤",larrbfs:"⤟",larr:"←",Larr:"↞",lArr:"⇐",larrfs:"⤝",larrhk:"↩",larrlp:"↫",larrpl:"⤹",larrsim:"⥳",larrtl:"↢",latail:"⤙",lAtail:"⤛",lat:"⪫",late:"⪭",lates:"⪭︀",lbarr:"⤌",lBarr:"⤎",lbbrk:"❲",lbrace:"{",lbrack:"[",lbrke:"⦋",lbrksld:"⦏",lbrkslu:"⦍",Lcaron:"Ľ",lcaron:"ľ",Lcedil:"Ļ",lcedil:"ļ",lceil:"⌈",lcub:"{",Lcy:"Л",lcy:"л",ldca:"⤶",ldquo:"“",ldquor:"„",ldrdhar:"⥧",ldrushar:"⥋",ldsh:"↲",le:"≤",lE:"≦",LeftAngleBracket:"⟨",LeftArrowBar:"⇤",leftarrow:"←",LeftArrow:"←",Leftarrow:"⇐",LeftArrowRightArrow:"⇆",leftarrowtail:"↢",LeftCeiling:"⌈",LeftDoubleBracket:"⟦",LeftDownTeeVector:"⥡",LeftDownVectorBar:"⥙",LeftDownVector:"⇃",LeftFloor:"⌊",leftharpoondown:"↽",leftharpoonup:"↼",leftleftarrows:"⇇",leftrightarrow:"↔",LeftRightArrow:"↔",Leftrightarrow:"⇔",leftrightarrows:"⇆",leftrightharpoons:"⇋",leftrightsquigarrow:"↭",LeftRightVector:"⥎",LeftTeeArrow:"↤",LeftTee:"⊣",LeftTeeVector:"⥚",leftthreetimes:"⋋",LeftTriangleBar:"⧏",LeftTriangle:"⊲",LeftTriangleEqual:"⊴",LeftUpDownVector:"⥑",LeftUpTeeVector:"⥠",LeftUpVectorBar:"⥘",LeftUpVector:"↿",LeftVectorBar:"⥒",LeftVector:"↼",lEg:"⪋",leg:"⋚",leq:"≤",leqq:"≦",leqslant:"⩽",lescc:"⪨",les:"⩽",lesdot:"⩿",lesdoto:"⪁",lesdotor:"⪃",lesg:"⋚︀",lesges:"⪓",lessapprox:"⪅",lessdot:"⋖",lesseqgtr:"⋚",lesseqqgtr:"⪋",LessEqualGreater:"⋚",LessFullEqual:"≦",LessGreater:"≶",lessgtr:"≶",LessLess:"⪡",lesssim:"≲",LessSlantEqual:"⩽",LessTilde:"≲",lfisht:"⥼",lfloor:"⌊",Lfr:"𝔏",lfr:"𝔩",lg:"≶",lgE:"⪑",lHar:"⥢",lhard:"↽",lharu:"↼",lharul:"⥪",lhblk:"▄",LJcy:"Љ",ljcy:"љ",llarr:"⇇",ll:"≪",Ll:"⋘",llcorner:"⌞",Lleftarrow:"⇚",llhard:"⥫",lltri:"◺",Lmidot:"Ŀ",lmidot:"ŀ",lmoustache:"⎰",lmoust:"⎰",lnap:"⪉",lnapprox:"⪉",lne:"⪇",lnE:"≨",lneq:"⪇",lneqq:"≨",lnsim:"⋦",loang:"⟬",loarr:"⇽",lobrk:"⟦",longleftarrow:"⟵",LongLeftArrow:"⟵",Longleftarrow:"⟸",longleftrightarrow:"⟷",LongLeftRightArrow:"⟷",Longleftrightarrow:"⟺",longmapsto:"⟼",longrightarrow:"⟶",LongRightArrow:"⟶",Longrightarrow:"⟹",looparrowleft:"↫",looparrowright:"↬",lopar:"⦅",Lopf:"𝕃",lopf:"𝕝",loplus:"⨭",lotimes:"⨴",lowast:"∗",lowbar:"_",LowerLeftArrow:"↙",LowerRightArrow:"↘",loz:"◊",lozenge:"◊",lozf:"⧫",lpar:"(",lparlt:"⦓",lrarr:"⇆",lrcorner:"⌟",lrhar:"⇋",lrhard:"⥭",lrm:"‎",lrtri:"⊿",lsaquo:"‹",lscr:"𝓁",Lscr:"ℒ",lsh:"↰",Lsh:"↰",lsim:"≲",lsime:"⪍",lsimg:"⪏",lsqb:"[",lsquo:"‘",lsquor:"‚",Lstrok:"Ł",lstrok:"ł",ltcc:"⪦",ltcir:"⩹",lt:"<",LT:"<",Lt:"≪",ltdot:"⋖",lthree:"⋋",ltimes:"⋉",ltlarr:"⥶",ltquest:"⩻",ltri:"◃",ltrie:"⊴",ltrif:"◂",ltrPar:"⦖",lurdshar:"⥊",luruhar:"⥦",lvertneqq:"≨︀",lvnE:"≨︀",macr:"¯",male:"♂",malt:"✠",maltese:"✠",Map:"⤅",map:"↦",mapsto:"↦",mapstodown:"↧",mapstoleft:"↤",mapstoup:"↥",marker:"▮",mcomma:"⨩",Mcy:"М",mcy:"м",mdash:"—",mDDot:"∺",measuredangle:"∡",MediumSpace:" ",Mellintrf:"ℳ",Mfr:"𝔐",mfr:"𝔪",mho:"℧",micro:"µ",midast:"*",midcir:"⫰",mid:"∣",middot:"·",minusb:"⊟",minus:"−",minusd:"∸",minusdu:"⨪",MinusPlus:"∓",mlcp:"⫛",mldr:"…",mnplus:"∓",models:"⊧",Mopf:"𝕄",mopf:"𝕞",mp:"∓",mscr:"𝓂",Mscr:"ℳ",mstpos:"∾",Mu:"Μ",mu:"μ",multimap:"⊸",mumap:"⊸",nabla:"∇",Nacute:"Ń",nacute:"ń",nang:"∠⃒",nap:"≉",napE:"⩰̸",napid:"≋̸",napos:"ʼn",napprox:"≉",natural:"♮",naturals:"ℕ",natur:"♮",nbsp:" ",nbump:"≎̸",nbumpe:"≏̸",ncap:"⩃",Ncaron:"Ň",ncaron:"ň",Ncedil:"Ņ",ncedil:"ņ",ncong:"≇",ncongdot:"⩭̸",ncup:"⩂",Ncy:"Н",ncy:"н",ndash:"–",nearhk:"⤤",nearr:"↗",neArr:"⇗",nearrow:"↗",ne:"≠",nedot:"≐̸",NegativeMediumSpace:"​",NegativeThickSpace:"​",NegativeThinSpace:"​",NegativeVeryThinSpace:"​",nequiv:"≢",nesear:"⤨",nesim:"≂̸",NestedGreaterGreater:"≫",NestedLessLess:"≪",NewLine:"\n",nexist:"∄",nexists:"∄",Nfr:"𝔑",nfr:"𝔫",ngE:"≧̸",nge:"≱",ngeq:"≱",ngeqq:"≧̸",ngeqslant:"⩾̸",nges:"⩾̸",nGg:"⋙̸",ngsim:"≵",nGt:"≫⃒",ngt:"≯",ngtr:"≯",nGtv:"≫̸",nharr:"↮",nhArr:"⇎",nhpar:"⫲",ni:"∋",nis:"⋼",nisd:"⋺",niv:"∋",NJcy:"Њ",njcy:"њ",nlarr:"↚",nlArr:"⇍",nldr:"‥",nlE:"≦̸",nle:"≰",nleftarrow:"↚",nLeftarrow:"⇍",nleftrightarrow:"↮",nLeftrightarrow:"⇎",nleq:"≰",nleqq:"≦̸",nleqslant:"⩽̸",nles:"⩽̸",nless:"≮",nLl:"⋘̸",nlsim:"≴",nLt:"≪⃒",nlt:"≮",nltri:"⋪",nltrie:"⋬",nLtv:"≪̸",nmid:"∤",NoBreak:"⁠",NonBreakingSpace:" ",nopf:"𝕟",Nopf:"ℕ",Not:"⫬",not:"¬",NotCongruent:"≢",NotCupCap:"≭",NotDoubleVerticalBar:"∦",NotElement:"∉",NotEqual:"≠",NotEqualTilde:"≂̸",NotExists:"∄",NotGreater:"≯",NotGreaterEqual:"≱",NotGreaterFullEqual:"≧̸",NotGreaterGreater:"≫̸",NotGreaterLess:"≹",NotGreaterSlantEqual:"⩾̸",NotGreaterTilde:"≵",NotHumpDownHump:"≎̸",NotHumpEqual:"≏̸",notin:"∉",notindot:"⋵̸",notinE:"⋹̸",notinva:"∉",notinvb:"⋷",notinvc:"⋶",NotLeftTriangleBar:"⧏̸",NotLeftTriangle:"⋪",NotLeftTriangleEqual:"⋬",NotLess:"≮",NotLessEqual:"≰",NotLessGreater:"≸",NotLessLess:"≪̸",NotLessSlantEqual:"⩽̸",NotLessTilde:"≴",NotNestedGreaterGreater:"⪢̸",NotNestedLessLess:"⪡̸",notni:"∌",notniva:"∌",notnivb:"⋾",notnivc:"⋽",NotPrecedes:"⊀",NotPrecedesEqual:"⪯̸",NotPrecedesSlantEqual:"⋠",NotReverseElement:"∌",NotRightTriangleBar:"⧐̸",NotRightTriangle:"⋫",NotRightTriangleEqual:"⋭",NotSquareSubset:"⊏̸",NotSquareSubsetEqual:"⋢",NotSquareSuperset:"⊐̸",NotSquareSupersetEqual:"⋣",NotSubset:"⊂⃒",NotSubsetEqual:"⊈",NotSucceeds:"⊁",NotSucceedsEqual:"⪰̸",NotSucceedsSlantEqual:"⋡",NotSucceedsTilde:"≿̸",NotSuperset:"⊃⃒",NotSupersetEqual:"⊉",NotTilde:"≁",NotTildeEqual:"≄",NotTildeFullEqual:"≇",NotTildeTilde:"≉",NotVerticalBar:"∤",nparallel:"∦",npar:"∦",nparsl:"⫽⃥",npart:"∂̸",npolint:"⨔",npr:"⊀",nprcue:"⋠",nprec:"⊀",npreceq:"⪯̸",npre:"⪯̸",nrarrc:"⤳̸",nrarr:"↛",nrArr:"⇏",nrarrw:"↝̸",nrightarrow:"↛",nRightarrow:"⇏",nrtri:"⋫",nrtrie:"⋭",nsc:"⊁",nsccue:"⋡",nsce:"⪰̸",Nscr:"𝒩",nscr:"𝓃",nshortmid:"∤",nshortparallel:"∦",nsim:"≁",nsime:"≄",nsimeq:"≄",nsmid:"∤",nspar:"∦",nsqsube:"⋢",nsqsupe:"⋣",nsub:"⊄",nsubE:"⫅̸",nsube:"⊈",nsubset:"⊂⃒",nsubseteq:"⊈",nsubseteqq:"⫅̸",nsucc:"⊁",nsucceq:"⪰̸",nsup:"⊅",nsupE:"⫆̸",nsupe:"⊉",nsupset:"⊃⃒",nsupseteq:"⊉",nsupseteqq:"⫆̸",ntgl:"≹",Ntilde:"Ñ",ntilde:"ñ",ntlg:"≸",ntriangleleft:"⋪",ntrianglelefteq:"⋬",ntriangleright:"⋫",ntrianglerighteq:"⋭",Nu:"Ν",nu:"ν",num:"#",numero:"№",numsp:" ",nvap:"≍⃒",nvdash:"⊬",nvDash:"⊭",nVdash:"⊮",nVDash:"⊯",nvge:"≥⃒",nvgt:">⃒",nvHarr:"⤄",nvinfin:"⧞",nvlArr:"⤂",nvle:"≤⃒",nvlt:"<⃒",nvltrie:"⊴⃒",nvrArr:"⤃",nvrtrie:"⊵⃒",nvsim:"∼⃒",nwarhk:"⤣",nwarr:"↖",nwArr:"⇖",nwarrow:"↖",nwnear:"⤧",Oacute:"Ó",oacute:"ó",oast:"⊛",Ocirc:"Ô",ocirc:"ô",ocir:"⊚",Ocy:"О",ocy:"о",odash:"⊝",Odblac:"Ő",odblac:"ő",odiv:"⨸",odot:"⊙",odsold:"⦼",OElig:"Œ",oelig:"œ",ofcir:"⦿",Ofr:"𝔒",ofr:"𝔬",ogon:"˛",Ograve:"Ò",ograve:"ò",ogt:"⧁",ohbar:"⦵",ohm:"Ω",oint:"∮",olarr:"↺",olcir:"⦾",olcross:"⦻",oline:"‾",olt:"⧀",Omacr:"Ō",omacr:"ō",Omega:"Ω",omega:"ω",Omicron:"Ο",omicron:"ο",omid:"⦶",ominus:"⊖",Oopf:"𝕆",oopf:"𝕠",opar:"⦷",OpenCurlyDoubleQuote:"“",OpenCurlyQuote:"‘",operp:"⦹",oplus:"⊕",orarr:"↻",Or:"⩔",or:"∨",ord:"⩝",order:"ℴ",orderof:"ℴ",ordf:"ª",ordm:"º",origof:"⊶",oror:"⩖",orslope:"⩗",orv:"⩛",oS:"Ⓢ",Oscr:"𝒪",oscr:"ℴ",Oslash:"Ø",oslash:"ø",osol:"⊘",Otilde:"Õ",otilde:"õ",otimesas:"⨶",Otimes:"⨷",otimes:"⊗",Ouml:"Ö",ouml:"ö",ovbar:"⌽",OverBar:"‾",OverBrace:"⏞",OverBracket:"⎴",OverParenthesis:"⏜",para:"¶",parallel:"∥",par:"∥",parsim:"⫳",parsl:"⫽",part:"∂",PartialD:"∂",Pcy:"П",pcy:"п",percnt:"%",period:".",permil:"‰",perp:"⊥",pertenk:"‱",Pfr:"𝔓",pfr:"𝔭",Phi:"Φ",phi:"φ",phiv:"ϕ",phmmat:"ℳ",phone:"☎",Pi:"Π",pi:"π",pitchfork:"⋔",piv:"ϖ",planck:"ℏ",planckh:"ℎ",plankv:"ℏ",plusacir:"⨣",plusb:"⊞",pluscir:"⨢",plus:"+",plusdo:"∔",plusdu:"⨥",pluse:"⩲",PlusMinus:"±",plusmn:"±",plussim:"⨦",plustwo:"⨧",pm:"±",Poincareplane:"ℌ",pointint:"⨕",popf:"𝕡",Popf:"ℙ",pound:"£",prap:"⪷",Pr:"⪻",pr:"≺",prcue:"≼",precapprox:"⪷",prec:"≺",preccurlyeq:"≼",Precedes:"≺",PrecedesEqual:"⪯",PrecedesSlantEqual:"≼",PrecedesTilde:"≾",preceq:"⪯",precnapprox:"⪹",precneqq:"⪵",precnsim:"⋨",pre:"⪯",prE:"⪳",precsim:"≾",prime:"′",Prime:"″",primes:"ℙ",prnap:"⪹",prnE:"⪵",prnsim:"⋨",prod:"∏",Product:"∏",profalar:"⌮",profline:"⌒",profsurf:"⌓",prop:"∝",Proportional:"∝",Proportion:"∷",propto:"∝",prsim:"≾",prurel:"⊰",Pscr:"𝒫",pscr:"𝓅",Psi:"Ψ",psi:"ψ",puncsp:" ",Qfr:"𝔔",qfr:"𝔮",qint:"⨌",qopf:"𝕢",Qopf:"ℚ",qprime:"⁗",Qscr:"𝒬",qscr:"𝓆",quaternions:"ℍ",quatint:"⨖",quest:"?",questeq:"≟",quot:'"',QUOT:'"',rAarr:"⇛",race:"∽̱",Racute:"Ŕ",racute:"ŕ",radic:"√",raemptyv:"⦳",rang:"⟩",Rang:"⟫",rangd:"⦒",range:"⦥",rangle:"⟩",raquo:"»",rarrap:"⥵",rarrb:"⇥",rarrbfs:"⤠",rarrc:"⤳",rarr:"→",Rarr:"↠",rArr:"⇒",rarrfs:"⤞",rarrhk:"↪",rarrlp:"↬",rarrpl:"⥅",rarrsim:"⥴",Rarrtl:"⤖",rarrtl:"↣",rarrw:"↝",ratail:"⤚",rAtail:"⤜",ratio:"∶",rationals:"ℚ",rbarr:"⤍",rBarr:"⤏",RBarr:"⤐",rbbrk:"❳",rbrace:"}",rbrack:"]",rbrke:"⦌",rbrksld:"⦎",rbrkslu:"⦐",Rcaron:"Ř",rcaron:"ř",Rcedil:"Ŗ",rcedil:"ŗ", +rceil:"⌉",rcub:"}",Rcy:"Р",rcy:"р",rdca:"⤷",rdldhar:"⥩",rdquo:"”",rdquor:"”",rdsh:"↳",real:"ℜ",realine:"ℛ",realpart:"ℜ",reals:"ℝ",Re:"ℜ",rect:"▭",reg:"®",REG:"®",ReverseElement:"∋",ReverseEquilibrium:"⇋",ReverseUpEquilibrium:"⥯",rfisht:"⥽",rfloor:"⌋",rfr:"𝔯",Rfr:"ℜ",rHar:"⥤",rhard:"⇁",rharu:"⇀",rharul:"⥬",Rho:"Ρ",rho:"ρ",rhov:"ϱ",RightAngleBracket:"⟩",RightArrowBar:"⇥",rightarrow:"→",RightArrow:"→",Rightarrow:"⇒",RightArrowLeftArrow:"⇄",rightarrowtail:"↣",RightCeiling:"⌉",RightDoubleBracket:"⟧",RightDownTeeVector:"⥝",RightDownVectorBar:"⥕",RightDownVector:"⇂",RightFloor:"⌋",rightharpoondown:"⇁",rightharpoonup:"⇀",rightleftarrows:"⇄",rightleftharpoons:"⇌",rightrightarrows:"⇉",rightsquigarrow:"↝",RightTeeArrow:"↦",RightTee:"⊢",RightTeeVector:"⥛",rightthreetimes:"⋌",RightTriangleBar:"⧐",RightTriangle:"⊳",RightTriangleEqual:"⊵",RightUpDownVector:"⥏",RightUpTeeVector:"⥜",RightUpVectorBar:"⥔",RightUpVector:"↾",RightVectorBar:"⥓",RightVector:"⇀",ring:"˚",risingdotseq:"≓",rlarr:"⇄",rlhar:"⇌",rlm:"‏",rmoustache:"⎱",rmoust:"⎱",rnmid:"⫮",roang:"⟭",roarr:"⇾",robrk:"⟧",ropar:"⦆",ropf:"𝕣",Ropf:"ℝ",roplus:"⨮",rotimes:"⨵",RoundImplies:"⥰",rpar:")",rpargt:"⦔",rppolint:"⨒",rrarr:"⇉",Rrightarrow:"⇛",rsaquo:"›",rscr:"𝓇",Rscr:"ℛ",rsh:"↱",Rsh:"↱",rsqb:"]",rsquo:"’",rsquor:"’",rthree:"⋌",rtimes:"⋊",rtri:"▹",rtrie:"⊵",rtrif:"▸",rtriltri:"⧎",RuleDelayed:"⧴",ruluhar:"⥨",rx:"℞",Sacute:"Ś",sacute:"ś",sbquo:"‚",scap:"⪸",Scaron:"Š",scaron:"š",Sc:"⪼",sc:"≻",sccue:"≽",sce:"⪰",scE:"⪴",Scedil:"Ş",scedil:"ş",Scirc:"Ŝ",scirc:"ŝ",scnap:"⪺",scnE:"⪶",scnsim:"⋩",scpolint:"⨓",scsim:"≿",Scy:"С",scy:"с",sdotb:"⊡",sdot:"⋅",sdote:"⩦",searhk:"⤥",searr:"↘",seArr:"⇘",searrow:"↘",sect:"§",semi:";",seswar:"⤩",setminus:"∖",setmn:"∖",sext:"✶",Sfr:"𝔖",sfr:"𝔰",sfrown:"⌢",sharp:"♯",SHCHcy:"Щ",shchcy:"щ",SHcy:"Ш",shcy:"ш",ShortDownArrow:"↓",ShortLeftArrow:"←",shortmid:"∣",shortparallel:"∥",ShortRightArrow:"→",ShortUpArrow:"↑",shy:"­",Sigma:"Σ",sigma:"σ",sigmaf:"ς",sigmav:"ς",sim:"∼",simdot:"⩪",sime:"≃",simeq:"≃",simg:"⪞",simgE:"⪠",siml:"⪝",simlE:"⪟",simne:"≆",simplus:"⨤",simrarr:"⥲",slarr:"←",SmallCircle:"∘",smallsetminus:"∖",smashp:"⨳",smeparsl:"⧤",smid:"∣",smile:"⌣",smt:"⪪",smte:"⪬",smtes:"⪬︀",SOFTcy:"Ь",softcy:"ь",solbar:"⌿",solb:"⧄",sol:"/",Sopf:"𝕊",sopf:"𝕤",spades:"♠",spadesuit:"♠",spar:"∥",sqcap:"⊓",sqcaps:"⊓︀",sqcup:"⊔",sqcups:"⊔︀",Sqrt:"√",sqsub:"⊏",sqsube:"⊑",sqsubset:"⊏",sqsubseteq:"⊑",sqsup:"⊐",sqsupe:"⊒",sqsupset:"⊐",sqsupseteq:"⊒",square:"□",Square:"□",SquareIntersection:"⊓",SquareSubset:"⊏",SquareSubsetEqual:"⊑",SquareSuperset:"⊐",SquareSupersetEqual:"⊒",SquareUnion:"⊔",squarf:"▪",squ:"□",squf:"▪",srarr:"→",Sscr:"𝒮",sscr:"𝓈",ssetmn:"∖",ssmile:"⌣",sstarf:"⋆",Star:"⋆",star:"☆",starf:"★",straightepsilon:"ϵ",straightphi:"ϕ",strns:"¯",sub:"⊂",Sub:"⋐",subdot:"⪽",subE:"⫅",sube:"⊆",subedot:"⫃",submult:"⫁",subnE:"⫋",subne:"⊊",subplus:"⪿",subrarr:"⥹",subset:"⊂",Subset:"⋐",subseteq:"⊆",subseteqq:"⫅",SubsetEqual:"⊆",subsetneq:"⊊",subsetneqq:"⫋",subsim:"⫇",subsub:"⫕",subsup:"⫓",succapprox:"⪸",succ:"≻",succcurlyeq:"≽",Succeeds:"≻",SucceedsEqual:"⪰",SucceedsSlantEqual:"≽",SucceedsTilde:"≿",succeq:"⪰",succnapprox:"⪺",succneqq:"⪶",succnsim:"⋩",succsim:"≿",SuchThat:"∋",sum:"∑",Sum:"∑",sung:"♪",sup1:"¹",sup2:"²",sup3:"³",sup:"⊃",Sup:"⋑",supdot:"⪾",supdsub:"⫘",supE:"⫆",supe:"⊇",supedot:"⫄",Superset:"⊃",SupersetEqual:"⊇",suphsol:"⟉",suphsub:"⫗",suplarr:"⥻",supmult:"⫂",supnE:"⫌",supne:"⊋",supplus:"⫀",supset:"⊃",Supset:"⋑",supseteq:"⊇",supseteqq:"⫆",supsetneq:"⊋",supsetneqq:"⫌",supsim:"⫈",supsub:"⫔",supsup:"⫖",swarhk:"⤦",swarr:"↙",swArr:"⇙",swarrow:"↙",swnwar:"⤪",szlig:"ß",Tab:" 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32:this.$=n.lineType.DOTTED_LINE}},table:[{3:1,4:2,5:[1,3]},{1:[3]},{1:[2,1]},{6:[1,4]},{7:5,9:6,10:10,11:14,12:7,14:8,15:9,16:r,20:n,21:i,45:a,46:s,47:o},{8:[1,18]},{6:[1,19],8:[2,3]},e(u,[2,7],{13:[1,20]}),e(u,[2,9]),e(u,[2,10]),e(u,[2,15],{22:21,24:24,25:25,13:[1,23],23:[1,22],26:c,27:l,28:h,29:d,30:f,31:p}),{10:32,11:14,45:a,46:s,47:o},e(u,[2,17]),e(u,[2,18]),e(g,[2,6],{11:14,10:33,45:a,46:s,47:o}),e(m,[2,46]),e(m,[2,47]),e(m,[2,48]),{1:[2,2]},{7:34,9:6,10:10,11:14,12:7,14:8,15:9,16:r,20:n,21:i,45:a,46:s,47:o},e(u,[2,8]),{10:35,11:14,23:[1,36],45:a,46:s,47:o},{22:37,24:24,25:25,26:c,27:l,28:h,29:d,30:f,31:p},e(u,[2,16]),{25:38,30:f,31:p},e(y,[2,26],{24:39,26:c,27:l,28:h,29:d}),e(v,[2,27]),e(v,[2,28]),e(v,[2,29]),e(v,[2,30]),e(b,[2,31]),e(b,[2,32]),e(u,[2,11],{17:[1,40]}),e(g,[2,5]),{8:[2,4]},e(_,[2,19]),{10:41,11:14,45:a,46:s,47:o},{10:42,11:14,23:[1,43],45:a,46:s,47:o},e(y,[2,25],{24:44,26:c,27:l,28:h,29:d}),e(y,[2,24]),{18:45,20:A},e(_,[2,21]),e(_,[2,20]),{10:47,11:14,45:a,46:s,47:o},e(y,[2,23]),{19:[1,48]},{18:49,19:[2,13],20:A},e(_,[2,22]),e(u,[2,12]),{19:[2,14]}],defaultActions:{2:[2,1],18:[2,2],34:[2,4],49:[2,14]},parseError:function(t,e){if(!e.recoverable){var r=function(t,e){this.message=t,this.hash=e};throw r.prototype=new Error,new r(t,e)}this.trace(t)},parse:function(t){var e=this,r=[0],n=[null],i=[],a=this.table,s="",o=0,u=0,c=0,l=2,h=1,d=i.slice.call(arguments,1),f=Object.create(this.lexer),p={yy:{}};for(var g in this.yy)Object.prototype.hasOwnProperty.call(this.yy,g)&&(p.yy[g]=this.yy[g]);f.setInput(t,p.yy),p.yy.lexer=f,p.yy.parser=this,"undefined"==typeof f.yylloc&&(f.yylloc={});var m=f.yylloc;i.push(m);var y=f.options&&f.options.ranges;"function"==typeof p.yy.parseError?this.parseError=p.yy.parseError:this.parseError=Object.getPrototypeOf(this).parseError;for(var v,b,_,A,w,x,E,k,D,C=function(){var t;return t=f.lex()||h,"number"!=typeof t&&(t=e.symbols_[t]||t),t},F={};;){if(_=r[r.length-1],this.defaultActions[_]?A=this.defaultActions[_]:((null===v||"undefined"==typeof v)&&(v=C()),A=a[_]&&a[_][v]),"undefined"==typeof A||!A.length||!A[0]){var T="";D=[];for(x in a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 2:if(E=this.productions_[A[1]][1],F.$=n[n.length-E],F._$={first_line:i[i.length-(E||1)].first_line,last_line:i[i.length-1].last_line,first_column:i[i.length-(E||1)].first_column,last_column:i[i.length-1].last_column},y&&(F._$.range=[i[i.length-(E||1)].range[0],i[i.length-1].range[1]]),w=this.performAction.apply(F,[s,u,o,p.yy,A[1],n,i].concat(d)),"undefined"!=typeof w)return w;E&&(r=r.slice(0,-1*E*2),n=n.slice(0,-1*E),i=i.slice(0,-1*E)),r.push(this.productions_[A[1]][0]),n.push(F.$),i.push(F._$),k=a[r[r.length-2]][r[r.length-1]],r.push(k);break;case 3:return!0}}return!0}},x=function(){var t={EOF:1,parseError:function(t,e){if(!this.yy.parser)throw new Error(t);this.yy.parser.parseError(t,e)},setInput:function(t,e){return this.yy=e||this.yy||{},this._input=t,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var t=this._input[0];this.yytext+=t,this.yyleng++,this.offset++,this.match+=t,this.matched+=t;var e=t.match(/(?:\r\n?|\n).*/g);return e?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),t},unput:function(t){var e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(t,e,r,n){switch(r){case 0:break;case 1:return 6;case 2:break;case 3:return 5;case 4:return this.begin("struct"),17;case 5:return this.popState(),19;case 6:break;case 7:return"MEMBER";case 8:return 16;case 9:this.begin("string");break;case 10:this.popState();break;case 11:return"STR";case 12:return 27;case 13:return 27;case 14:return 29;case 15:return 29;case 16:return 28;case 17:return 26;case 18:return 30;case 19:return 31;case 20:return 13;case 21:return 43;case 22:return"DOT";case 23:return"PLUS";case 24:return 40;case 25:return"EQUALS";case 26:return"EQUALS";case 27:return 47;case 28:return"PUNCTUATION";case 29:return 46;case 30:return 45;case 31:return 42;case 32:return 8}},rules:[/^(?:%%[^\n]*)/,/^(?:\n+)/,/^(?:\s+)/,/^(?:classDiagram\b)/,/^(?:[\{])/,/^(?:\})/,/^(?:[\n])/,/^(?:[^\{\}\n]*)/,/^(?:class\b)/,/^(?:["])/,/^(?:["])/,/^(?:[^"]*)/,/^(?:\s*<\|)/,/^(?:\s*\|>)/,/^(?:\s*>)/,/^(?:\s*<)/,/^(?:\s*\*)/,/^(?:\s*o\b)/,/^(?:--)/,/^(?:\.\.)/,/^(?::[^#\n;]+)/,/^(?:-)/,/^(?:\.)/,/^(?:\+)/,/^(?:%)/,/^(?:=)/,/^(?:=)/,/^(?:[A-Za-z]+)/,/^(?:[!"#$%&'*+,-.`?\\_\/])/,/^(?:[0-9]+)/,/^(?:[\u00AA\u00B5\u00BA\u00C0-\u00D6\u00D8-\u00F6]|[\u00F8-\u02C1\u02C6-\u02D1\u02E0-\u02E4\u02EC\u02EE\u0370-\u0374\u0376\u0377]|[\u037A-\u037D\u0386\u0388-\u038A\u038C\u038E-\u03A1\u03A3-\u03F5]|[\u03F7-\u0481\u048A-\u0527\u0531-\u0556\u0559\u0561-\u0587\u05D0-\u05EA]|[\u05F0-\u05F2\u0620-\u064A\u066E\u066F\u0671-\u06D3\u06D5\u06E5\u06E6\u06EE]|[\u06EF\u06FA-\u06FC\u06FF\u0710\u0712-\u072F\u074D-\u07A5\u07B1\u07CA-\u07EA]|[\u07F4\u07F5\u07FA\u0800-\u0815\u081A\u0824\u0828\u0840-\u0858\u08A0]|[\u08A2-\u08AC\u0904-\u0939\u093D\u0950\u0958-\u0961\u0971-\u0977]|[\u0979-\u097F\u0985-\u098C\u098F\u0990\u0993-\u09A8\u09AA-\u09B0\u09B2]|[\u09B6-\u09B9\u09BD\u09CE\u09DC\u09DD\u09DF-\u09E1\u09F0\u09F1\u0A05-\u0A0A]|[\u0A0F\u0A10\u0A13-\u0A28\u0A2A-\u0A30\u0A32\u0A33\u0A35\u0A36\u0A38\u0A39]|[\u0A59-\u0A5C\u0A5E\u0A72-\u0A74\u0A85-\u0A8D\u0A8F-\u0A91\u0A93-\u0AA8]|[\u0AAA-\u0AB0\u0AB2\u0AB3\u0AB5-\u0AB9\u0ABD\u0AD0\u0AE0\u0AE1\u0B05-\u0B0C]|[\u0B0F\u0B10\u0B13-\u0B28\u0B2A-\u0B30\u0B32\u0B33\u0B35-\u0B39\u0B3D\u0B5C]|[\u0B5D\u0B5F-\u0B61\u0B71\u0B83\u0B85-\u0B8A\u0B8E-\u0B90\u0B92-\u0B95\u0B99]|[\u0B9A\u0B9C\u0B9E\u0B9F\u0BA3\u0BA4\u0BA8-\u0BAA\u0BAE-\u0BB9\u0BD0]|[\u0C05-\u0C0C\u0C0E-\u0C10\u0C12-\u0C28\u0C2A-\u0C33\u0C35-\u0C39\u0C3D]|[\u0C58\u0C59\u0C60\u0C61\u0C85-\u0C8C\u0C8E-\u0C90\u0C92-\u0CA8\u0CAA-\u0CB3]|[\u0CB5-\u0CB9\u0CBD\u0CDE\u0CE0\u0CE1\u0CF1\u0CF2\u0D05-\u0D0C\u0D0E-\u0D10]|[\u0D12-\u0D3A\u0D3D\u0D4E\u0D60\u0D61\u0D7A-\u0D7F\u0D85-\u0D96\u0D9A-\u0DB1]|[\u0DB3-\u0DBB\u0DBD\u0DC0-\u0DC6\u0E01-\u0E30\u0E32\u0E33\u0E40-\u0E46\u0E81]|[\u0E82\u0E84\u0E87\u0E88\u0E8A\u0E8D\u0E94-\u0E97\u0E99-\u0E9F\u0EA1-\u0EA3]|[\u0EA5\u0EA7\u0EAA\u0EAB\u0EAD-\u0EB0\u0EB2\u0EB3\u0EBD\u0EC0-\u0EC4\u0EC6]|[\u0EDC-\u0EDF\u0F00\u0F40-\u0F47\u0F49-\u0F6C\u0F88-\u0F8C\u1000-\u102A]|[\u103F\u1050-\u1055\u105A-\u105D\u1061\u1065\u1066\u106E-\u1070\u1075-\u1081]|[\u108E\u10A0-\u10C5\u10C7\u10CD\u10D0-\u10FA\u10FC-\u1248\u124A-\u124D]|[\u1250-\u1256\u1258\u125A-\u125D\u1260-\u1288\u128A-\u128D\u1290-\u12B0]|[\u12B2-\u12B5\u12B8-\u12BE\u12C0\u12C2-\u12C5\u12C8-\u12D6\u12D8-\u1310]|[\u1312-\u1315\u1318-\u135A\u1380-\u138F\u13A0-\u13F4\u1401-\u166C]|[\u166F-\u167F\u1681-\u169A\u16A0-\u16EA\u1700-\u170C\u170E-\u1711]|[\u1720-\u1731\u1740-\u1751\u1760-\u176C\u176E-\u1770\u1780-\u17B3\u17D7]|[\u17DC\u1820-\u1877\u1880-\u18A8\u18AA\u18B0-\u18F5\u1900-\u191C]|[\u1950-\u196D\u1970-\u1974\u1980-\u19AB\u19C1-\u19C7\u1A00-\u1A16]|[\u1A20-\u1A54\u1AA7\u1B05-\u1B33\u1B45-\u1B4B\u1B83-\u1BA0\u1BAE\u1BAF]|[\u1BBA-\u1BE5\u1C00-\u1C23\u1C4D-\u1C4F\u1C5A-\u1C7D\u1CE9-\u1CEC]|[\u1CEE-\u1CF1\u1CF5\u1CF6\u1D00-\u1DBF\u1E00-\u1F15\u1F18-\u1F1D]|[\u1F20-\u1F45\u1F48-\u1F4D\u1F50-\u1F57\u1F59\u1F5B\u1F5D\u1F5F-\u1F7D]|[\u1F80-\u1FB4\u1FB6-\u1FBC\u1FBE\u1FC2-\u1FC4\u1FC6-\u1FCC\u1FD0-\u1FD3]|[\u1FD6-\u1FDB\u1FE0-\u1FEC\u1FF2-\u1FF4\u1FF6-\u1FFC\u2071\u207F]|[\u2090-\u209C\u2102\u2107\u210A-\u2113\u2115\u2119-\u211D\u2124\u2126\u2128]|[\u212A-\u212D\u212F-\u2139\u213C-\u213F\u2145-\u2149\u214E\u2183\u2184]|[\u2C00-\u2C2E\u2C30-\u2C5E\u2C60-\u2CE4\u2CEB-\u2CEE\u2CF2\u2CF3]|[\u2D00-\u2D25\u2D27\u2D2D\u2D30-\u2D67\u2D6F\u2D80-\u2D96\u2DA0-\u2DA6]|[\u2DA8-\u2DAE\u2DB0-\u2DB6\u2DB8-\u2DBE\u2DC0-\u2DC6\u2DC8-\u2DCE]|[\u2DD0-\u2DD6\u2DD8-\u2DDE\u2E2F\u3005\u3006\u3031-\u3035\u303B\u303C]|[\u3041-\u3096\u309D-\u309F\u30A1-\u30FA\u30FC-\u30FF\u3105-\u312D]|[\u3131-\u318E\u31A0-\u31BA\u31F0-\u31FF\u3400-\u4DB5\u4E00-\u9FCC]|[\uA000-\uA48C\uA4D0-\uA4FD\uA500-\uA60C\uA610-\uA61F\uA62A\uA62B]|[\uA640-\uA66E\uA67F-\uA697\uA6A0-\uA6E5\uA717-\uA71F\uA722-\uA788]|[\uA78B-\uA78E\uA790-\uA793\uA7A0-\uA7AA\uA7F8-\uA801\uA803-\uA805]|[\uA807-\uA80A\uA80C-\uA822\uA840-\uA873\uA882-\uA8B3\uA8F2-\uA8F7\uA8FB]|[\uA90A-\uA925\uA930-\uA946\uA960-\uA97C\uA984-\uA9B2\uA9CF\uAA00-\uAA28]|[\uAA40-\uAA42\uAA44-\uAA4B\uAA60-\uAA76\uAA7A\uAA80-\uAAAF\uAAB1\uAAB5]|[\uAAB6\uAAB9-\uAABD\uAAC0\uAAC2\uAADB-\uAADD\uAAE0-\uAAEA\uAAF2-\uAAF4]|[\uAB01-\uAB06\uAB09-\uAB0E\uAB11-\uAB16\uAB20-\uAB26\uAB28-\uAB2E]|[\uABC0-\uABE2\uAC00-\uD7A3\uD7B0-\uD7C6\uD7CB-\uD7FB\uF900-\uFA6D]|[\uFA70-\uFAD9\uFB00-\uFB06\uFB13-\uFB17\uFB1D\uFB1F-\uFB28\uFB2A-\uFB36]|[\uFB38-\uFB3C\uFB3E\uFB40\uFB41\uFB43\uFB44\uFB46-\uFBB1\uFBD3-\uFD3D]|[\uFD50-\uFD8F\uFD92-\uFDC7\uFDF0-\uFDFB\uFE70-\uFE74\uFE76-\uFEFC]|[\uFF21-\uFF3A\uFF41-\uFF5A\uFF66-\uFFBE\uFFC2-\uFFC7\uFFCA-\uFFCF]|[\uFFD2-\uFFD7\uFFDA-\uFFDC])/,/^(?:\s)/,/^(?:$)/],conditions:{string:{rules:[10,11],inclusive:!1},struct:{rules:[5,6,7],inclusive:!1},INITIAL:{rules:[0,1,2,3,4,8,9,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32],inclusive:!0}}};return t}();return w.lexer=x,t.prototype=w,w.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],111:[function(t,e,r){(function(e){"use strict";var n=t("../../logger"),i=new n.Log,a="",s=!1;r.setMessage=function(t){i.debug("Setting message to: "+t),a=t},r.getMessage=function(){return a},r.setInfo=function(t){s=t},r.getInfo=function(){return s},r.parseError=function(t,r){e.mermaidAPI.parseError(t,r)}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"../../logger":126}],112:[function(t,e,r){"use strict";var n=t("./exampleDb"),i=t("./parser/example.js"),a=t("../../d3"),s=t("../../logger"),o=new s.Log;r.draw=function(t,e,r){var s;s=i.parser,s.yy=n,o.debug("Renering example diagram"),s.parse(t);var u=a.select("#"+e),c=u.append("g");c.append("text").attr("x",100).attr("y",40).attr("class","version").attr("font-size","32px").style("text-anchor","middle").text("mermaid "+r),u.attr("height",100),u.attr("width",400)}},{"../../d3":107,"../../logger":126,"./exampleDb":111,"./parser/example.js":113}],113:[function(t,e,r){(function(n){"use strict";var i=function(){function t(){this.yy={}}var e=function(t,e,r,n){for(r=r||{},n=t.length;n--;r[t[n]]=e);return r},r=[6,9,10,12],n={trace:function(){},yy:{},symbols_:{error:2,start:3,info:4,document:5,EOF:6,line:7,statement:8,NL:9,showInfo:10,message:11,say:12,TXT:13,$accept:0,$end:1},terminals_:{2:"error",4:"info",6:"EOF",9:"NL",10:"showInfo",12:"say",13:"TXT"},productions_:[0,[3,3],[5,0],[5,2],[7,1],[7,1],[8,1],[8,1],[11,2]],performAction:function(t,e,r,n,i,a,s){var o=a.length-1;switch(i){case 1:return n;case 4:break;case 6:n.setInfo(!0);break;case 7:n.setMessage(a[o]);break;case 8:this.$=a[o-1].substring(1).trim().replace(/\\n/gm,"\n")}},table:[{3:1,4:[1,2]},{1:[3]},e(r,[2,2],{5:3}),{6:[1,4],7:5,8:6,9:[1,7],10:[1,8],11:9,12:[1,10]},{1:[2,1]},e(r,[2,3]),e(r,[2,4]),e(r,[2,5]),e(r,[2,6]),e(r,[2,7]),{13:[1,11]},e(r,[2,8])],defaultActions:{4:[2,1]},parseError:function(t,e){if(!e.recoverable){var r=function(t,e){this.message=t,this.hash=e};throw r.prototype=new Error,new r(t,e)}this.trace(t)},parse:function(t){var e=this,r=[0],n=[null],i=[],a=this.table,s="",o=0,u=0,c=0,l=2,h=1,d=i.slice.call(arguments,1),f=Object.create(this.lexer),p={yy:{}};for(var g in this.yy)Object.prototype.hasOwnProperty.call(this.yy,g)&&(p.yy[g]=this.yy[g]);f.setInput(t,p.yy),p.yy.lexer=f,p.yy.parser=this,"undefined"==typeof f.yylloc&&(f.yylloc={});var m=f.yylloc;i.push(m);var y=f.options&&f.options.ranges;"function"==typeof p.yy.parseError?this.parseError=p.yy.parseError:this.parseError=Object.getPrototypeOf(this).parseError;for(var v,b,_,A,w,x,E,k,D,C=function(){var t;return t=f.lex()||h,"number"!=typeof t&&(t=e.symbols_[t]||t),t},F={};;){if(_=r[r.length-1],this.defaultActions[_]?A=this.defaultActions[_]:((null===v||"undefined"==typeof v)&&(v=C()),A=a[_]&&a[_][v]),"undefined"==typeof A||!A.length||!A[0]){var T="";D=[];for(x in a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 2:if(E=this.productions_[A[1]][1],F.$=n[n.length-E],F._$={first_line:i[i.length-(E||1)].first_line,last_line:i[i.length-1].last_line,first_column:i[i.length-(E||1)].first_column,last_column:i[i.length-1].last_column},y&&(F._$.range=[i[i.length-(E||1)].range[0],i[i.length-1].range[1]]),w=this.performAction.apply(F,[s,u,o,p.yy,A[1],n,i].concat(d)),"undefined"!=typeof w)return 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e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{"case-insensitive":!0},performAction:function(t,e,r,n){switch(r){case 0:return 9;case 1:return 10;case 2:return 4;case 3:return 12;case 4:return 13;case 5:return 6;case 6:return"INVALID"}},rules:[/^(?:[\n]+)/i,/^(?:showInfo\b)/i,/^(?:info\b)/i,/^(?:say\b)/i,/^(?::[^#\n;]+)/i,/^(?:$)/i,/^(?:.)/i],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6],inclusive:!0}}};return t}();return n.lexer=i,t.prototype=n,n.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],114:[function(t,e,r){"use strict";var n,i=t("../../logger"),a=new i.Log;if(t)try{n=t("dagre-d3")}catch(s){a.debug("Could not load dagre-d3")}n||(n=window.dagreD3),e.exports=n},{"../../logger":126,"dagre-d3":4}],115:[function(t,e,r){"use strict";var n=t("./graphDb"),i=t("./parser/flow"),a=t("./parser/dot"),s=t("../../d3"),o=t("./dagre-d3"),u=t("../../logger"),c=new u.Log,l={};e.exports.setConf=function(t){var e,r=Object.keys(t);for(e=0;e0&&(s=a.classes.join(" "));var o="";o=n(o,a.styles),i="undefined"==typeof a.text?a.id:a.text;var u="";l.htmlLabels?(u="html",i=i.replace(/fa:fa[\w\-]+/g,function(t){return''})):(i=i.replace(/
/g,"\n"),u="text");var c=0,h="";switch(a.type){case"round":c=5,h="rect";break;case"square":h="rect";break;case"diamond":h="question";break;case"odd":h="rect_left_inv_arrow";break;case"odd_right":h="rect_left_inv_arrow";break;case"circle":h="circle";break;case"ellipse":h="ellipse";break;case"group":h="rect",i="";break;default:h="rect"}e.setNode(a.id,{labelType:u,shape:h,label:i,rx:c,ry:c,"class":s,style:o,id:a.id})})},r.addEdges=function(t,e){var r,n,i=0;"undefined"!=typeof t.defaultStyle&&(n=t.defaultStyle.toString().replace(/,/g,";")),t.forEach(function(t){i++,r="arrow_open"===t.type?"none":"normal";var a="";if("undefined"!=typeof t.style)t.style.forEach(function(t){a=a+t+";"});else switch(t.stroke){case"normal":a="fill:none","undefined"!=typeof n&&(a=n);break;case"dotted":a="stroke: #333; fill:none;stroke-width:2px;stroke-dasharray:3;";break;case"thick":a="stroke: #333; stroke-width: 3.5px;fill:none"}if("undefined"==typeof t.text)"undefined"==typeof t.style?e.setEdge(t.start,t.end,{style:a,arrowhead:r},i):e.setEdge(t.start,t.end,{style:a,arrowheadStyle:"fill: #333",arrowhead:r},i);else{var s=t.text.replace(/
/g,"\n");"undefined"==typeof t.style?l.htmlLabels?e.setEdge(t.start,t.end,{labelType:"html",style:a,labelpos:"c",label:''+t.text+"",arrowheadStyle:"fill: #333",arrowhead:r},i):e.setEdge(t.start,t.end,{labelType:"text",style:"stroke: #333; stroke-width: 1.5px;fill:none",labelpos:"c",label:s,arrowheadStyle:"fill: #333",arrowhead:r},i):e.setEdge(t.start,t.end,{labelType:"text",style:a,arrowheadStyle:"fill: #333",label:s,arrowhead:r},i)}})},r.getClasses=function(t,e){var r;n.clear(),r=e?a.parser:i.parser,r.yy=n,r.parse(t);var s=n.getClasses();return"undefined"==typeof s["default"]&&(s["default"]={id:"default"},s["default"].styles=[],s["default"].clusterStyles=["rx:4px","fill: rgb(255, 255, 222)","rx: 4px","stroke: rgb(170, 170, 51)","stroke-width: 1px"],s["default"].nodeLabelStyles=["fill:#000","stroke:none","font-weight:300",'font-family:"Helvetica Neue",Helvetica,Arial,sans-serf',"font-size:14px"],s["default"].edgeLabelStyles=["fill:#000","stroke:none","font-weight:300",'font-family:"Helvetica Neue",Helvetica,Arial,sans-serf',"font-size:14px"]), +s},r.draw=function(t,e,u){c.debug("Drawing flowchart");var h;n.clear(),h=u?a.parser:i.parser,h.yy=n;try{h.parse(t)}catch(d){c.debug("Parsing failed")}var f;f=n.getDirection(),"undefined"==typeof f&&(f="TD");var p,g=new o.graphlib.Graph({multigraph:!0,compound:!0}).setGraph({rankdir:f,marginx:20,marginy:20}).setDefaultEdgeLabel(function(){return{}}),m=n.getSubGraphs(),y=0;for(y=m.length-1;y>=0;y--)p=m[y],n.addVertex(p.id,p.title,"group",void 0);var v=n.getVertices(),b=n.getEdges();y=0;var _;for(y=m.length-1;y>=0;y--)for(p=m[y],s.selectAll("cluster").append("text"),_=0;_0?t.split(",").forEach(function(t){"undefined"!=typeof vertices[t]&&vertices[t].classes.push(e)}):"undefined"!=typeof vertices[t]&&vertices[t].classes.push(e)};var setTooltip=function(t,e){"undefined"!=typeof e&&(tooltips[t]=e)},setClickFun=function setClickFun(id,functionName){"undefined"!=typeof functionName&&"undefined"!=typeof vertices[id]&&funs.push(function(element){var elem=d3.select(element).select("#"+id);null!==elem&&elem.on("click",function(){eval(functionName+"('"+id+"')")})})},setLink=function(t,e){"undefined"!=typeof e&&"undefined"!=typeof vertices[t]&&funs.push(function(r){var n=d3.select(r).select("#"+t);null!==n&&n.on("click",function(){window.open(e,"newTab")})})};exports.getTooltip=function(t){return tooltips[t]},exports.setClickEvent=function(t,e,r,n){t.indexOf(",")>0?t.split(",").forEach(function(t){setTooltip(t,n),setClickFun(t,e),setLink(t,r)}):(setTooltip(t,n),setClickFun(t,e),setLink(t,r))},exports.bindFunctions=function(t){funs.forEach(function(e){e(t)})},exports.getDirection=function(){return direction},exports.getVertices=function(){return vertices},exports.getEdges=function(){return edges},exports.getClasses=function(){return classes};var setupToolTips=function(t){var e=d3.select(".mermaidTooltip");null===e[0][0]&&(e=d3.select("body").append("div").attr("class","mermaidTooltip").style("opacity",0));var r=d3.select(t).select("svg"),n=r.selectAll("g.node");n.on("mouseover",function(){var t=d3.select(this),r=t.attr("title");if(null!==r){var n=this.getBoundingClientRect();e.transition().duration(200).style("opacity",".9"),e.html(t.attr("title")).style("left",n.left+(n.right-n.left)/2+"px").style("top",n.top-14+document.body.scrollTop+"px"),t.classed("hover",!0)}}).on("mouseout",function(){e.transition().duration(500).style("opacity",0);var t=d3.select(this);t.classed("hover",!1)})};funs.push(setupToolTips),exports.clear=function(){vertices={},classes={},edges=[],funs=[],funs.push(setupToolTips),subGraphs=[],subCount=0,tooltips=[]},exports.defaultStyle=function(){return"fill:#ffa;stroke: #f66; stroke-width: 3px; stroke-dasharray: 5, 5;fill:#ffa;stroke: #666;"},exports.addSubGraph=function(t,e){function r(t){var e={"boolean":{},number:{},string:{}},r=[];return t.filter(function(t){var n=typeof t;return" "===t?!1:n in e?e[n].hasOwnProperty(t)?!1:e[n][t]=!0:r.indexOf(t)>=0?!1:r.push(t)})}var n=[];n=r(n.concat.apply(n,t));var i={id:"subGraph"+subCount,nodes:n,title:e};return subGraphs.push(i),subCount+=1,i.id};var getPosForId=function(t){var e;for(e=0;e2e3)){if(posCrossRef[secCount]=r,subGraphs[r].id===e)return{result:!0,count:0};for(var i=0,a=1;i=0){var o=t(e,s);if(o.result)return{result:!0,count:a+o.count};a+=o.count}i+=1}return{result:!1,count:a}}};exports.getDepthFirstPos=function(t){return posCrossRef[t]},exports.indexNodes=function(){secCount=-1,subGraphs.length>0&&indexNodes("none",subGraphs.length-1,0)},exports.getSubGraphs=function(){return subGraphs},exports.parseError=function(t,e){global.mermaidAPI.parseError(t,e)}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"../../d3":107,"../../logger":126}],117:[function(t,e,r){(function(n){"use strict";var i=function(){function t(){this.yy={}}var e=function(t,e,r,n){for(r=r||{},n=t.length;n--;r[t[n]]=e);return r},r=[1,5],n=[1,6],i=[1,12],a=[1,13],s=[1,14],o=[1,15],u=[1,16],c=[1,17],l=[1,18],h=[1,19],d=[1,20],f=[1,21],p=[1,22],g=[8,16,17,18,19,20,21,22,23,24,25,26],m=[1,37],y=[1,33],v=[1,34],b=[1,35],_=[1,36],A=[8,10,16,17,18,19,20,21,22,23,24,25,26,28,32,37,39,40,45,57,58],w=[10,28],x=[10,28,37,57,58],E=[2,49],k=[1,45],D=[1,48],C=[1,49],F=[1,52],T=[2,65],S=[1,65],B=[1,66],L=[1,67],O=[1,68],I=[1,69],N=[1,70],M=[1,71],R=[1,72],P=[1,73],q=[8,16,17,18,19,20,21,22,23,24,25,26,47],j=[10,28,37],U={trace:function(){},yy:{},symbols_:{error:2,expressions:3,graph:4,EOF:5,graphStatement:6,idStatement:7,"{":8,stmt_list:9,"}":10,strict:11,GRAPH:12,DIGRAPH:13,textNoTags:14,textNoTagsToken:15,ALPHA:16,NUM:17,COLON:18,PLUS:19,EQUALS:20,MULT:21,DOT:22,BRKT:23,SPACE:24,MINUS:25,keywords:26,stmt:27,";":28,node_stmt:29,edge_stmt:30,attr_stmt:31,"=":32,subgraph:33,attr_list:34,NODE:35,EDGE:36,"[":37,a_list:38,"]":39,",":40,edgeRHS:41,node_id:42,edgeop:43,port:44,":":45,compass_pt:46,SUBGRAPH:47,n:48,ne:49,e:50,se:51,s:52,sw:53,w:54,nw:55,c:56,ARROW_POINT:57,ARROW_OPEN:58,$accept:0,$end:1},terminals_:{2:"error",5:"EOF",8:"{",10:"}",11:"strict",12:"GRAPH",13:"DIGRAPH",16:"ALPHA",17:"NUM",18:"COLON",19:"PLUS",20:"EQUALS",21:"MULT",22:"DOT",23:"BRKT",24:"SPACE",25:"MINUS",26:"keywords",28:";",32:"=",35:"NODE",36:"EDGE",37:"[",39:"]",40:",",45:":",47:"SUBGRAPH",48:"n",49:"ne",50:"e",51:"se",52:"s",53:"sw",54:"w",55:"nw",56:"c",57:"ARROW_POINT",58:"ARROW_OPEN"},productions_:[0,[3,2],[4,5],[4,6],[4,4],[6,1],[6,1],[7,1],[14,1],[14,2],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[9,1],[9,3],[27,1],[27,1],[27,1],[27,3],[27,1],[31,2],[31,2],[31,2],[34,4],[34,3],[34,3],[34,2],[38,5],[38,5],[38,3],[30,3],[30,3],[30,2],[30,2],[41,3],[41,3],[41,2],[41,2],[29,2],[29,1],[42,2],[42,1],[44,4],[44,2],[44,2],[33,5],[33,4],[33,3],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,0],[43,1],[43,1]],performAction:function(t,e,r,n,i,a,s){var o=a.length-1;switch(i){case 1:this.$=a[o-1];break;case 2:this.$=a[o-4];break;case 3:this.$=a[o-5];break;case 4:this.$=a[o-3];break;case 8:case 10:case 11:this.$=a[o];break;case 9:this.$=a[o-1]+""+a[o];break;case 12:case 13:case 14:case 15:case 16:case 18:case 19:case 20:this.$=a[o];break;case 17:this.$="
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a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 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this.yy=e||this.yy||{},this._input=t,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var t=this._input[0];this.yytext+=t,this.yyleng++,this.offset++,this.match+=t,this.matched+=t;var e=t.match(/(?:\r\n?|\n).*/g);return e?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),t},unput:function(t){var e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(t,e,r,n){switch(r){case 0:break;case 1:this.begin("string");break;case 2:this.popState();break;case 3:return"STR";case 4:return 71;case 5:return 78;case 6:return 72;case 7:return 73;case 8:return 74;case 9:return 75;case 10:return 12;case 11:return 30;case 12:return 32;case 13:return 13;case 14:return 13;case 15:return 13;case 16:return 13;case 17:return 13;case 18:return 13;case 19:return 81;case 20:return 90;case 21:return 88;case 22:return 8;case 23:return 85;case 24:return 97;case 25:return 16;case 26:return 15;case 27:return 17;case 28:return 18;case 29:return 53;case 30:return 51;case 31:return 52;case 32:return 54;case 33:return 58;case 34:return 56;case 35:return 57;case 36:return 59;case 37:return 58;case 38:return 56;case 39:return 57;case 40:return 59;case 41:return 63;case 42:return 61;case 43:return 62;case 44:return 64;case 45:return 50;case 46:return 55;case 47:return 60;case 48:return 40;case 49:return 41;case 50:return 46;case 51:return 91;case 52:return 95;case 53:return 83;case 54:return 96;case 55:return 96;case 56:return 87;case 57:return 93;case 58:return 94;case 59:return 65;case 60:return 38;case 61:return 39;case 62:return 36;case 63:return 37;case 64:return 42;case 65:return 43;case 66:return 100;case 67:return 9;case 68:return 10;case 69:return 11}},rules:[/^(?:%%[^\n]*)/,/^(?:["])/,/^(?:["])/,/^(?:[^"]*)/,/^(?:style\b)/,/^(?:default\b)/,/^(?:linkStyle\b)/,/^(?:classDef\b)/,/^(?:class\b)/,/^(?:click\b)/,/^(?:graph\b)/,/^(?:subgraph\b)/,/^(?:end\b\s*)/,/^(?:LR\b)/,/^(?:RL\b)/,/^(?:TB\b)/,/^(?:BT\b)/,/^(?:TD\b)/,/^(?:BR\b)/,/^(?:[0-9]+)/,/^(?:#)/,/^(?::)/,/^(?:;)/,/^(?:,)/,/^(?:\*)/,/^(?:<)/,/^(?:>)/,/^(?:\^)/,/^(?:v\b)/,/^(?:\s*--[x]\s*)/,/^(?:\s*-->\s*)/,/^(?:\s*--[o]\s*)/,/^(?:\s*---\s*)/,/^(?:\s*-\.-[x]\s*)/,/^(?:\s*-\.->\s*)/,/^(?:\s*-\.-[o]\s*)/,/^(?:\s*-\.-\s*)/,/^(?:\s*.-[x]\s*)/,/^(?:\s*\.->\s*)/,/^(?:\s*\.-[o]\s*)/,/^(?:\s*\.-\s*)/,/^(?:\s*==[x]\s*)/,/^(?:\s*==>\s*)/,/^(?:\s*==[o]\s*)/,/^(?:\s*==[\=]\s*)/,/^(?:\s*--\s*)/,/^(?:\s*-\.\s*)/,/^(?:\s*==\s*)/,/^(?:\(-)/,/^(?:-\))/,/^(?:-)/,/^(?:\.)/,/^(?:\+)/,/^(?:%)/,/^(?:=)/,/^(?:=)/,/^(?:[A-Za-z]+)/,/^(?:[!"#$%&'*+,-.`?\\_\/])/,/^(?:[\u00AA\u00B5\u00BA\u00C0-\u00D6\u00D8-\u00F6]|[\u00F8-\u02C1\u02C6-\u02D1\u02E0-\u02E4\u02EC\u02EE\u0370-\u0374\u0376\u0377]|[\u037A-\u037D\u0386\u0388-\u038A\u038C\u038E-\u03A1\u03A3-\u03F5]|[\u03F7-\u0481\u048A-\u0527\u0531-\u0556\u0559\u0561-\u0587\u05D0-\u05EA]|[\u05F0-\u05F2\u0620-\u064A\u066E\u066F\u0671-\u06D3\u06D5\u06E5\u06E6\u06EE]|[\u06EF\u06FA-\u06FC\u06FF\u0710\u0712-\u072F\u074D-\u07A5\u07B1\u07CA-\u07EA]|[\u07F4\u07F5\u07FA\u0800-\u0815\u081A\u0824\u0828\u0840-\u0858\u08A0]|[\u08A2-\u08AC\u0904-\u0939\u093D\u0950\u0958-\u0961\u0971-\u0977]|[\u0979-\u097F\u0985-\u098C\u098F\u0990\u0993-\u09A8\u09AA-\u09B0\u09B2]|[\u09B6-\u09B9\u09BD\u09CE\u09DC\u09DD\u09DF-\u09E1\u09F0\u09F1\u0A05-\u0A0A]|[\u0A0F\u0A10\u0A13-\u0A28\u0A2A-\u0A30\u0A32\u0A33\u0A35\u0A36\u0A38\u0A39]|[\u0A59-\u0A5C\u0A5E\u0A72-\u0A74\u0A85-\u0A8D\u0A8F-\u0A91\u0A93-\u0AA8]|[\u0AAA-\u0AB0\u0AB2\u0AB3\u0AB5-\u0AB9\u0ABD\u0AD0\u0AE0\u0AE1\u0B05-\u0B0C]|[\u0B0F\u0B10\u0B13-\u0B28\u0B2A-\u0B30\u0B32\u0B33\u0B35-\u0B39\u0B3D\u0B5C]|[\u0B5D\u0B5F-\u0B61\u0B71\u0B83\u0B85-\u0B8A\u0B8E-\u0B90\u0B92-\u0B95\u0B99]|[\u0B9A\u0B9C\u0B9E\u0B9F\u0BA3\u0BA4\u0BA8-\u0BAA\u0BAE-\u0BB9\u0BD0]|[\u0C05-\u0C0C\u0C0E-\u0C10\u0C12-\u0C28\u0C2A-\u0C33\u0C35-\u0C39\u0C3D]|[\u0C58\u0C59\u0C60\u0C61\u0C85-\u0C8C\u0C8E-\u0C90\u0C92-\u0CA8\u0CAA-\u0CB3]|[\u0CB5-\u0CB9\u0CBD\u0CDE\u0CE0\u0CE1\u0CF1\u0CF2\u0D05-\u0D0C\u0D0E-\u0D10]|[\u0D12-\u0D3A\u0D3D\u0D4E\u0D60\u0D61\u0D7A-\u0D7F\u0D85-\u0D96\u0D9A-\u0DB1]|[\u0DB3-\u0DBB\u0DBD\u0DC0-\u0DC6\u0E01-\u0E30\u0E32\u0E33\u0E40-\u0E46\u0E81]|[\u0E82\u0E84\u0E87\u0E88\u0E8A\u0E8D\u0E94-\u0E97\u0E99-\u0E9F\u0EA1-\u0EA3]|[\u0EA5\u0EA7\u0EAA\u0EAB\u0EAD-\u0EB0\u0EB2\u0EB3\u0EBD\u0EC0-\u0EC4\u0EC6]|[\u0EDC-\u0EDF\u0F00\u0F40-\u0F47\u0F49-\u0F6C\u0F88-\u0F8C\u1000-\u102A]|[\u103F\u1050-\u1055\u105A-\u105D\u1061\u1065\u1066\u106E-\u1070\u1075-\u1081]|[\u108E\u10A0-\u10C5\u10C7\u10CD\u10D0-\u10FA\u10FC-\u1248\u124A-\u124D]|[\u1250-\u1256\u1258\u125A-\u125D\u1260-\u1288\u128A-\u128D\u1290-\u12B0]|[\u12B2-\u12B5\u12B8-\u12BE\u12C0\u12C2-\u12C5\u12C8-\u12D6\u12D8-\u1310]|[\u1312-\u1315\u1318-\u135A\u1380-\u138F\u13A0-\u13F4\u1401-\u166C]|[\u166F-\u167F\u1681-\u169A\u16A0-\u16EA\u1700-\u170C\u170E-\u1711]|[\u1720-\u1731\u1740-\u1751\u1760-\u176C\u176E-\u1770\u1780-\u17B3\u17D7]|[\u17DC\u1820-\u1877\u1880-\u18A8\u18AA\u18B0-\u18F5\u1900-\u191C]|[\u1950-\u196D\u1970-\u1974\u1980-\u19AB\u19C1-\u19C7\u1A00-\u1A16]|[\u1A20-\u1A54\u1AA7\u1B05-\u1B33\u1B45-\u1B4B\u1B83-\u1BA0\u1BAE\u1BAF]|[\u1BBA-\u1BE5\u1C00-\u1C23\u1C4D-\u1C4F\u1C5A-\u1C7D\u1CE9-\u1CEC]|[\u1CEE-\u1CF1\u1CF5\u1CF6\u1D00-\u1DBF\u1E00-\u1F15\u1F18-\u1F1D]|[\u1F20-\u1F45\u1F48-\u1F4D\u1F50-\u1F57\u1F59\u1F5B\u1F5D\u1F5F-\u1F7D]|[\u1F80-\u1FB4\u1FB6-\u1FBC\u1FBE\u1FC2-\u1FC4\u1FC6-\u1FCC\u1FD0-\u1FD3]|[\u1FD6-\u1FDB\u1FE0-\u1FEC\u1FF2-\u1FF4\u1FF6-\u1FFC\u2071\u207F]|[\u2090-\u209C\u2102\u2107\u210A-\u2113\u2115\u2119-\u211D\u2124\u2126\u2128]|[\u212A-\u212D\u212F-\u2139\u213C-\u213F\u2145-\u2149\u214E\u2183\u2184]|[\u2C00-\u2C2E\u2C30-\u2C5E\u2C60-\u2CE4\u2CEB-\u2CEE\u2CF2\u2CF3]|[\u2D00-\u2D25\u2D27\u2D2D\u2D30-\u2D67\u2D6F\u2D80-\u2D96\u2DA0-\u2DA6]|[\u2DA8-\u2DAE\u2DB0-\u2DB6\u2DB8-\u2DBE\u2DC0-\u2DC6\u2DC8-\u2DCE]|[\u2DD0-\u2DD6\u2DD8-\u2DDE\u2E2F\u3005\u3006\u3031-\u3035\u303B\u303C]|[\u3041-\u3096\u309D-\u309F\u30A1-\u30FA\u30FC-\u30FF\u3105-\u312D]|[\u3131-\u318E\u31A0-\u31BA\u31F0-\u31FF\u3400-\u4DB5\u4E00-\u9FCC]|[\uA000-\uA48C\uA4D0-\uA4FD\uA500-\uA60C\uA610-\uA61F\uA62A\uA62B]|[\uA640-\uA66E\uA67F-\uA697\uA6A0-\uA6E5\uA717-\uA71F\uA722-\uA788]|[\uA78B-\uA78E\uA790-\uA793\uA7A0-\uA7AA\uA7F8-\uA801\uA803-\uA805]|[\uA807-\uA80A\uA80C-\uA822\uA840-\uA873\uA882-\uA8B3\uA8F2-\uA8F7\uA8FB]|[\uA90A-\uA925\uA930-\uA946\uA960-\uA97C\uA984-\uA9B2\uA9CF\uAA00-\uAA28]|[\uAA40-\uAA42\uAA44-\uAA4B\uAA60-\uAA76\uAA7A\uAA80-\uAAAF\uAAB1\uAAB5]|[\uAAB6\uAAB9-\uAABD\uAAC0\uAAC2\uAADB-\uAADD\uAAE0-\uAAEA\uAAF2-\uAAF4]|[\uAB01-\uAB06\uAB09-\uAB0E\uAB11-\uAB16\uAB20-\uAB26\uAB28-\uAB2E]|[\uABC0-\uABE2\uAC00-\uD7A3\uD7B0-\uD7C6\uD7CB-\uD7FB\uF900-\uFA6D]|[\uFA70-\uFAD9\uFB00-\uFB06\uFB13-\uFB17\uFB1D\uFB1F-\uFB28\uFB2A-\uFB36]|[\uFB38-\uFB3C\uFB3E\uFB40\uFB41\uFB43\uFB44\uFB46-\uFBB1\uFBD3-\uFD3D]|[\uFD50-\uFD8F\uFD92-\uFDC7\uFDF0-\uFDFB\uFE70-\uFE74\uFE76-\uFEFC]|[\uFF21-\uFF3A\uFF41-\uFF5A\uFF66-\uFFBE\uFFC2-\uFFC7\uFFCA-\uFFCF]|[\uFFD2-\uFFD7\uFFDA-\uFFDC])/,/^(?:\|)/,/^(?:\()/,/^(?:\))/,/^(?:\[)/,/^(?:\])/,/^(?:\{)/,/^(?:\})/,/^(?:")/,/^(?:\n+)/,/^(?:\s)/,/^(?:$)/],conditions:{string:{rules:[2,3],inclusive:!1},INITIAL:{rules:[0,1,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69],inclusive:!0}}};return t}();return Dt.lexer=Ct,t.prototype=Dt,Dt.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],119:[function(t,e,r){(function(e){"use strict";var n=t("moment"),i=t("../../logger"),a=new i.Log,s="",o="",u=[],c=[],l="";r.clear=function(){u=[],c=[],l="",o="",g=0,h=void 0,d=void 0,b=[]},r.setDateFormat=function(t){s=t},r.getDateFormat=function(){return s},r.setTitle=function(t){o=t},r.getTitle=function(){return o},r.addSection=function(t){l=t,u.push(t)},r.getTasks=function(){for(var t=A(),e=10,r=0;!t&&e>r;)t=A(),r++;return c=b};var h,d,f=function(t,e,i){i=i.trim();var s=/^after\s+([\d\w\-]+)/,o=s.exec(i.trim());if(null!==o){var u=r.findTaskById(o[1]);if("undefined"==typeof u){var c=new Date;return c.setHours(0,0,0,0),c}return u.endTime}return n(i,e.trim(),!0).isValid()?n(i,e.trim(),!0).toDate():(a.debug("Invalid date:"+i),a.debug("With date format:"+e.trim()),new Date)},p=function(t,e,r){if(r=r.trim(),n(r,e.trim(),!0).isValid())return n(r,e.trim()).toDate();var i=n(t),a=/^([\d]+)([wdhms])/,s=a.exec(r.trim());if(null!==s){switch(s[2]){case"s":i.add(s[1],"seconds");break;case"m":i.add(s[1],"minutes");break;case"h":i.add(s[1],"hours");break;case"d":i.add(s[1],"days");break;case"w":i.add(s[1],"weeks")}return i.toDate()}return i.toDate()},g=0,m=function(t){return"undefined"==typeof t?(g+=1,"task"+g):t},y=function(t,e){var n;n=":"===e.substr(0,1)?e.substr(1,e.length):e;for(var i=n.split(","),a={},s=r.getDateFormat(),o=!0;o;)o=!1,i[0].match(/^\s*active\s*$/)&&(a.active=!0,i.shift(1),o=!0),i[0].match(/^\s*done\s*$/)&&(a.done=!0,i.shift(1),o=!0),i[0].match(/^\s*crit\s*$/)&&(a.crit=!0,i.shift(1),o=!0);var 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r=function(t,e){this.message=t,this.hash=e};throw r.prototype=new Error,new r(t,e)}this.trace(t)},parse:function(t){var e=this,r=[0],n=[null],i=[],a=this.table,s="",o=0,u=0,c=0,l=2,h=1,d=i.slice.call(arguments,1),f=Object.create(this.lexer),p={yy:{}};for(var g in this.yy)Object.prototype.hasOwnProperty.call(this.yy,g)&&(p.yy[g]=this.yy[g]);f.setInput(t,p.yy),p.yy.lexer=f,p.yy.parser=this,"undefined"==typeof f.yylloc&&(f.yylloc={});var m=f.yylloc;i.push(m);var y=f.options&&f.options.ranges;"function"==typeof p.yy.parseError?this.parseError=p.yy.parseError:this.parseError=Object.getPrototypeOf(this).parseError;for(var v,b,_,A,w,x,E,k,D,C=function(){var t;return t=f.lex()||h,"number"!=typeof t&&(t=e.symbols_[t]||t),t},F={};;){if(_=r[r.length-1],this.defaultActions[_]?A=this.defaultActions[_]:((null===v||"undefined"==typeof v)&&(v=C()),A=a[_]&&a[_][v]),"undefined"==typeof A||!A.length||!A[0]){var T="";D=[];for(x in a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 2:if(E=this.productions_[A[1]][1],F.$=n[n.length-E],F._$={first_line:i[i.length-(E||1)].first_line,last_line:i[i.length-1].last_line,first_column:i[i.length-(E||1)].first_column,last_column:i[i.length-1].last_column},y&&(F._$.range=[i[i.length-(E||1)].range[0],i[i.length-1].range[1]]),w=this.performAction.apply(F,[s,u,o,p.yy,A[1],n,i].concat(d)),"undefined"!=typeof w)return w;E&&(r=r.slice(0,-1*E*2),n=n.slice(0,-1*E),i=i.slice(0,-1*E)),r.push(this.productions_[A[1]][0]),n.push(F.$),i.push(F._$),k=a[r[r.length-2]][r[r.length-1]],r.push(k);break;case 3:return!0}}return!0}},m=function(){var t={EOF:1,parseError:function(t,e){if(!this.yy.parser)throw new Error(t);this.yy.parser.parseError(t,e)},setInput:function(t,e){return this.yy=e||this.yy||{},this._input=t,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var t=this._input[0];this.yytext+=t,this.yyleng++,this.offset++,this.match+=t,this.matched+=t;var e=t.match(/(?:\r\n?|\n).*/g);return e?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),t},unput:function(t){var e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{"case-insensitive":!0},performAction:function(t,e,r,n){switch(r){case 0:return 9;case 1:break;case 2:break;case 3:break;case 4:break;case 5:return this.begin("ID"),10;case 6:return this.begin("ALIAS"),33;case 7:return this.popState(),this.popState(),this.begin("LINE"),12;case 8:return this.popState(),this.popState(),9;case 9:return this.begin("LINE"),18;case 10:return this.begin("LINE"),20;case 11:return this.begin("LINE"),21;case 12:return this.begin("LINE"),22;case 13:return this.popState(),13;case 14:return 19;case 15:return 30;case 16:return 31;case 17:return 26;case 18:return 23;case 19:return 16;case 20:return 4;case 21:return 29;case 22:return 9;case 23:return 33;case 24:return 36;case 25:return 37;case 26:return 34;case 27:return 35;case 28:return 38;case 29:return 39;case 30:return 40;case 31:return 9;case 32:return"INVALID"}},rules:[/^(?:[\n]+)/i,/^(?:\s+)/i,/^(?:((?!\n)\s)+)/i,/^(?:#[^\n]*)/i,/^(?:%[^\n]*)/i,/^(?:participant\b)/i,/^(?:[^\->:\n,;]+?(?=((?!\n)\s)+as(?!\n)\s|[#\n;]|$))/i,/^(?:as\b)/i,/^(?:(?:))/i,/^(?:loop\b)/i,/^(?:opt\b)/i,/^(?:alt\b)/i,/^(?:else\b)/i,/^(?:[^#\n;]*)/i,/^(?:end\b)/i,/^(?:left of\b)/i,/^(?:right of\b)/i,/^(?:over\b)/i,/^(?:note\b)/i,/^(?:title\b)/i,/^(?:sequenceDiagram\b)/i,/^(?:,)/i,/^(?:;)/i,/^(?:[^\->:\n,;]+)/i,/^(?:->>)/i,/^(?:-->>)/i,/^(?:->)/i,/^(?:-->)/i,/^(?:-[x])/i,/^(?:--[x])/i,/^(?::[^#\n;]+)/i,/^(?:$)/i,/^(?:.)/i],conditions:{LINE:{rules:[2,3,13],inclusive:!1},ALIAS:{rules:[2,3,7,8],inclusive:!1},ID:{rules:[2,3,6],inclusive:!1},INITIAL:{rules:[0,1,3,4,5,9,10,11,12,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32],inclusive:!0}}};return t}();return g.lexer=m,t.prototype=g,g.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],123:[function(t,e,r){(function(e){"use strict";var n={},i=[],a=[],s=t("../../logger"),o=new s.Log;r.addActor=function(t,e,r){var i=n[t];i&&e===i.name&&null==r||(null==r&&(r=e),n[t]={name:e,description:r})},r.addMessage=function(t,e,r,n){i.push({from:t,to:e,message:r,answer:n})},r.addSignal=function(t,e,r,n){o.debug("Adding message from="+t+" to="+e+" message="+r+" type="+n),i.push({from:t,to:e,message:r,type:n})},r.getMessages=function(){return i},r.getActors=function(){return n},r.getActor=function(t){return n[t]},r.getActorKeys=function(){return Object.keys(n)},r.clear=function(){n={},i=[]},r.LINETYPE={SOLID:0,DOTTED:1,NOTE:2,SOLID_CROSS:3,DOTTED_CROSS:4,SOLID_OPEN:5,DOTTED_OPEN:6,LOOP_START:10,LOOP_END:11,ALT_START:12,ALT_ELSE:13,ALT_END:14,OPT_START:15,OPT_END:16},r.ARROWTYPE={FILLED:0,OPEN:1},r.PLACEMENT={LEFTOF:0,RIGHTOF:1,OVER:2},r.addNote=function(t,e,n){var s={actor:t,placement:e,message:n},o=[].concat(t,t);a.push(s),i.push({from:o[0],to:o[1],message:n,type:r.LINETYPE.NOTE,placement:e})},r.parseError=function(t,r){e.mermaidAPI.parseError(t,r)},r.apply=function(t){if(t instanceof Array)t.forEach(function(t){r.apply(t)});else switch(t.type){case"addActor":r.addActor(t.actor,t.actor,t.description);break;case"addNote":r.addNote(t.actor,t.placement,t.text);break;case"addMessage":r.addSignal(t.from,t.to,t.msg,t.signalType);break;case"loopStart":r.addSignal(void 0,void 0,t.loopText,t.signalType);break;case"loopEnd":r.addSignal(void 0,void 0,void 0,t.signalType);break;case"optStart":r.addSignal(void 0,void 0,t.optText,t.signalType);break;case"optEnd":r.addSignal(void 0,void 0,void 0,t.signalType);break;case"altStart":r.addSignal(void 0,void 0,t.altText,t.signalType);break;case"else":r.addSignal(void 0,void 0,t.altText,t.signalType);break;case"altEnd":r.addSignal(void 0,void 0,void 0,t.signalType)}}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"../../logger":126}],124:[function(t,e,r){"use strict";var n=t("./parser/sequenceDiagram").parser;n.yy=t("./sequenceDb");var i=t("./svgDraw"),a=t("../../d3"),s=t("../../logger"),o=new s.Log,u={diagramMarginX:50,diagramMarginY:10,actorMargin:50,width:150,height:65,boxMargin:10,boxTextMargin:5,noteMargin:10,messageMargin:35,mirrorActors:!1,bottomMarginAdj:1};r.bounds={data:{startx:void 0,stopx:void 0,starty:void 0,stopy:void 0},verticalPos:0,list:[],init:function(){this.list=[],this.data={startx:void 0,stopx:void 0,starty:void 0,stopy:void 0},this.verticalPos=0},updateVal:function(t,e,r,n){"undefined"==typeof t[e]?t[e]=r:t[e]=n(r,t[e])},updateLoops:function(t,e,n,i){var a=this,s=0;this.list.forEach(function(o){s++;var c=a.list.length-s+1;a.updateVal(o,"startx",t-c*u.boxMargin,Math.min),a.updateVal(o,"starty",e-c*u.boxMargin,Math.min),a.updateVal(o,"stopx",n+c*u.boxMargin,Math.max),a.updateVal(o,"stopy",i+c*u.boxMargin,Math.max),a.updateVal(r.bounds.data,"startx",t-c*u.boxMargin,Math.min),a.updateVal(r.bounds.data,"starty",e-c*u.boxMargin,Math.min),a.updateVal(r.bounds.data,"stopx",n+c*u.boxMargin,Math.max),a.updateVal(r.bounds.data,"stopy",i+c*u.boxMargin,Math.max)})},insert:function(t,e,n,i){var a,s,o,u;a=Math.min(t,n),o=Math.max(t,n),s=Math.min(e,i),u=Math.max(e,i),this.updateVal(r.bounds.data,"startx",a,Math.min),this.updateVal(r.bounds.data,"starty",s,Math.min),this.updateVal(r.bounds.data,"stopx",o,Math.max), +this.updateVal(r.bounds.data,"stopy",u,Math.max),this.updateLoops(a,s,o,u)},newLoop:function(t){this.list.push({startx:void 0,starty:this.verticalPos,stopx:void 0,stopy:void 0,title:t})},endLoop:function(){var t=this.list.pop();return t},addElseToLoop:function(t){var e=this.list.pop();e.elsey=r.bounds.getVerticalPos(),e.elseText=t,this.list.push(e)},bumpVerticalPos:function(t){this.verticalPos=this.verticalPos+t,this.data.stopy=this.verticalPos},getVerticalPos:function(){return this.verticalPos},getBounds:function(){return this.data}};var c=function(t,e,n,a,s){var o=i.getNoteRect();o.x=e,o.y=n,o.width=s||u.width,o["class"]="note";var c=t.append("g"),l=i.drawRect(c,o),h=i.getTextObj();h.x=e-4,h.y=n-13,h.textMargin=u.noteMargin,h.dy="1em",h.text=a.message,h["class"]="noteText";var d=i.drawText(c,h,o.width-u.noteMargin),f=d[0][0].getBBox().height;!s&&f>u.width?(d.remove(),c=t.append("g"),d=i.drawText(c,h,2*o.width-u.noteMargin),f=d[0][0].getBBox().height,l.attr("width",2*o.width),r.bounds.insert(e,n,e+2*o.width,n+2*u.noteMargin+f)):r.bounds.insert(e,n,e+o.width,n+2*u.noteMargin+f),l.attr("height",f+2*u.noteMargin),r.bounds.bumpVerticalPos(f+2*u.noteMargin)},l=function(t,e,i,a,s){var o,c=t.append("g"),l=e+(i-e)/2,h=c.append("text").attr("x",l).attr("y",a-7).style("text-anchor","middle").attr("class","messageText").text(s.message);o="undefined"!=typeof h[0][0].getBBox?h[0][0].getBBox().width:h[0][0].getBoundingClientRect();var d;if(e===i){d=c.append("path").attr("d","M "+e+","+a+" C "+(e+60)+","+(a-10)+" "+(e+60)+","+(a+30)+" "+e+","+(a+20)),r.bounds.bumpVerticalPos(30);var f=Math.max(o/2,100);r.bounds.insert(e-f,r.bounds.getVerticalPos()-10,i+f,r.bounds.getVerticalPos())}else d=c.append("line"),d.attr("x1",e),d.attr("y1",a),d.attr("x2",i),d.attr("y2",a),r.bounds.insert(e,r.bounds.getVerticalPos()-10,i,r.bounds.getVerticalPos());s.type===n.yy.LINETYPE.DOTTED||s.type===n.yy.LINETYPE.DOTTED_CROSS||s.type===n.yy.LINETYPE.DOTTED_OPEN?(d.style("stroke-dasharray","3, 3"),d.attr("class","messageLine1")):d.attr("class","messageLine0");var p="";u.arrowMarkerAbsolute&&(p=window.location.protocol+"//"+window.location.host+window.location.pathname+window.location.search,p=p.replace(/\(/g,"\\("),p=p.replace(/\)/g,"\\)")),d.attr("stroke-width",2),d.attr("stroke","black"),d.style("fill","none"),(s.type===n.yy.LINETYPE.SOLID||s.type===n.yy.LINETYPE.DOTTED)&&d.attr("marker-end","url("+p+"#arrowhead)"),(s.type===n.yy.LINETYPE.SOLID_CROSS||s.type===n.yy.LINETYPE.DOTTED_CROSS)&&d.attr("marker-end","url("+p+"#crosshead)")};e.exports.drawActors=function(t,e,n,a){var s;for(s=0;s/gi," "),i=t.append("text");i.attr("x",e.x),i.attr("y",e.y),i.style("text-anchor",e.anchor),i.attr("fill",e.fill),"undefined"!=typeof e["class"]&&i.attr("class",e["class"]);var a=i.append("tspan");return a.attr("x",e.x+2*e.textMargin),a.text(n),"undefined"!=typeof i.textwrap&&i.textwrap({x:e.x,y:e.y,width:r,height:1800},e.textMargin),i},r.drawLabel=function(t,e){var n=r.getNoteRect();n.x=e.x,n.y=e.y,n.width=50,n.height=20,n.fill="#526e52",n.stroke="none",n["class"]="labelBox",r.drawRect(t,n),e.y=e.y+e.labelMargin,e.x=e.x+.5*e.labelMargin,e.fill="white",r.drawText(t,e)};var n=-1;r.drawActor=function(t,e,i,a,s){var o=e+s.width/2,u=t.append("g");0===i&&(n++,u.append("line").attr("id","actor"+n).attr("x1",o).attr("y1",5).attr("x2",o).attr("y2",2e3).attr("class","actor-line").attr("stroke-width","0.5px").attr("stroke","#999"));var c=r.getNoteRect();c.x=e,c.y=i,c.fill="#eaeaea",c.width=s.width,c.height=s.height,c["class"]="actor",c.rx=3,c.ry=3,r.drawRect(u,c),u.append("text").attr("x",o).attr("y",i+s.height/2+5).attr("class","actor").style("text-anchor","middle").text(a)},r.drawLoop=function(t,e,n,i){var 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}\n"));if(""!==n||""!==h||""!==d){var p=document.createElement("style");p.setAttribute("type","text/css"),p.setAttribute("title","mermaid-svg-internal-css"),p.innerHTML="/* */\n",t.insertBefore(p,t.firstChild)}};r.cloneCssStyles=s},{"./logger":126}]},{},[127])(127)}); diff --git a/docs/articles/theophylline.html b/docs/articles/theophylline.html new file mode 100644 index 0000000..92323b8 --- /dev/null +++ b/docs/articles/theophylline.html @@ -0,0 +1,145 @@ + + + + + + + +Theophylline dataset • PKPDdatasets + + + + + + +
+
+ + + +
+ +
+
+
+

Theophylline dataset

+ +

2017-05-04

+
+ + + +
+
+

+ Theophylline

+

The data in Theoph.csv came from a study of the kinetics of the anti-asthmatic agent theophylline reported by Boeckmann et al. (1992). In this experiment, the drug was administered orally to twelve subjects, and serum concentrations were measured at ten time points per subject over the subsequent 25 hours.

+

The common model for the kinetics of theophylline following oral administration is a one-compartment model with first-order absorption and elimination. In this model, the subject-specific pharmacokinetic parameters to be estimated are -

+
    +
  • the absorption rate constant, \(ka\),
    • +
  • the volume of distribution, \(V\), and
    • +
  • the elimination rate constant, \(k\).
    • +
+
+

Notes -

+
    +
  1. +\(Dose\) (units - milligram) is given at time \(t = 0\) into the \(Depot\) compartment - represents the gut
    2. +
  2. The \(Dose\) moves from the \(Depot\) compartment to the \(Central\) compartment with a first-order absorption rate constant \(ka\) +
    3. +
  3. +\(Central\) compartment is the observation compartment where concentrations of the drug \(C_p(t)\) are measured (units - milligram/Liter).
    4. +
  4. Volume of distribution parameter \(V\) (units = Liter) is a proportionality constant that scales the amount of drug in the \(Central\) compartment (mg) to the observed concentration (mg/L) - \(Concentration = Dose/V\) +
    5. +
  5. +\(k\) (units - 1/time) is the parameter that describes the elimination rate constant of the drug from the \(Central\) compartment
    6. +
  6. +\(CL\) (units - Liter/time) is useful parameter that relates the rate of elimination (units - milligram/time) to the measured concentration. \[ Rate of Elimination = CL \times C_p \] +
    7. +
+

\(CL\) can also be derived from \(k\), \(V\) where, \[ CL = k \times V\]

+
    +
  1. +\(Out\) is collection compartment without any exit rates. Such a compartment can be use to accumulate drug over time and is commonly referred to as area under the curve or \(AUC\).
    \[ AUC = \int\limits_0^\infty C_p\, \mathrm{d}t\] +
    2. +
+
+

+ Analytical Solution

+

\[C_p(t) = \frac{ Dose }{ V }\frac{ ka }{ ka - k }(e^{-k(t-t_D)} - e^{-ka(t-t_D)}) \]

+
+
+

+ ODE

+

\[ +\begin{array}{lcl} \frac{ dDepot }{ dt } & = & -ka\times Depot \\ \frac{ dCentral }{ dt } & = & ka\times Depot - k\times t \end{array} +\]

+
+
+
+

+ Data Structure

+
    +

  1. Subject an ordered factor with levels 1, …, 12 identifying the subject on whom the observation was made. The ordering is by increasing maximum concentration of theophylline observed.

    2. +

  2. Wt weight of the subject (kg).

    3. +

  3. Dose dose of theophylline administered orally to the subject (mg/kg).

    4. +

  4. Time time since drug administration when the sample was drawn (hr).

    5. +

  5. conc theophylline concentration in the sample (mg/L).

    6. +
+
+
+
+ + + +
+ + +
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/articles/theophylline_files/DiagrammeR-binding-0.9.0/DiagrammeR.js b/docs/articles/theophylline_files/DiagrammeR-binding-0.9.0/DiagrammeR.js new file mode 100644 index 0000000..eb3abc5 --- /dev/null +++ b/docs/articles/theophylline_files/DiagrammeR-binding-0.9.0/DiagrammeR.js @@ -0,0 +1,190 @@ +HTMLWidgets.widget({ + + name: 'DiagrammeR', + + type: 'output', + + initialize: function(el, width, height) { + + /* wait to initialize until renderValue + since x not provided until then + and mermaid will try to build the diagram + as soon as class of the div is set to "mermaid" + */ + + /* to prevent auto init() by mermaid + not documented but + see lines https://github.com/knsv/mermaid/blob/master/src/main.js#L100-L109 + mermaid_config in global with mermaid_config.startOnLoad = false + appears to turn off the auto init behavior + allowing us to callback after manually init and then callback + after complete + */ + window.mermaid.startOnLoad = false; + + // set config options for Gantt + // undocumented but these can be provided + // so from R + // m1 <- mermaid(spec) + // m1$x$config = list(ganttConfig = list( barHeight = 100 ) ) + mermaid.ganttConfig = { + titleTopMargin:25, + barHeight:20, + barGap:4, + topPadding:50, + sidePadding:100, + gridLineStartPadding:35, + fontSize:11, + numberSectionStyles:4, + axisFormatter: [ + // Within a day + ["%I:%M", function (d) { + return d.getHours(); + }], + // Monday a week + ["w. %U", function (d) { + return d.getDay() == 1; + }], + // Day within a week (not monday) + ["%a %d", function (d) { + return d.getDay() && d.getDate() != 1; + }], + // within a month + ["%b %d", function (d) { + return d.getDate() != 1; + }], + // Month + ["%m-%y", function (d) { + return d.getMonth(); + }] + ] + }; + + return { + // TODO: add instance fields as required + } + + }, + + renderValue: function(el, x, instance) { + + // if no diagram provided then assume + // that the diagrams are provided through htmltools tags + // and DiagrammeR was just used for dependencies + if ( x.diagram != "" ) { + el.innerHTML = x.diagram; + //if dynamic such as shiny remove data-processed + // so mermaid will reprocess and redraw + el.removeAttribute("data-processed"); + el.classList.add('mermaid'); + //make sure if shiny that we turn display back on + el.style.display = ""; + //again if dynamic such as shiny + // explicitly run mermaid.init() + } else { + // set display to none + // should we remove instead?? + el.style.display = "none"; + } + + // check for undocumented ganttConfig + // to override the defaults manually entered + // in initialize above + // note this is really sloppy and will not + // work well if multiple gantt charts + // with custom configs here + if( typeof x.config !== "undefined" && + typeof x.config.ganttConfig !== "undefined" ){ + Object.keys(x.config.ganttConfig).map(function(k){ + window.mermaid.ganttConfig[k] = x.config.ganttConfig[k]; + }) + } + + + // use this to sort of make our diagram responsive + // or at a minimum fit within the bounds set by htmlwidgets + // for the parent container + function makeResponsive(el){ + var svg = el.getElementsByTagName("svg")[0]; + if(svg){ + if(svg.width) {svg.removeAttribute("width")}; + if(svg.height) {svg.removeAttribute("height")}; + svg.style.width = "100%"; + svg.style.height = "100%"; + } + }; + + + // get all DiagrammeR mermaids widgets + dg = document.getElementsByClassName("DiagrammeR"); + // run mermaid.init + // but use try catch block + // to send error to the htmlwidget for display + try{ + mermaid.init( el ); + + // sort of make our diagram responsive + // should we make this an option? + // if so, then could easily add to list of post process tasks + makeResponsive( el ); + + /* + // change the id of our SVG assigned by mermaid to prevent conflict + // mermaid.init has a counter that will reset to 0 + // and cause duplication of SVG id if multiple + d3.select(el).select("svg") + .attr("id", "mermaidChart-" + el.id); + // now we have to change the styling assigned by mermaid + // to point to our new id that we have assigned + // will add if since sequence diagrams do not have stylesheet + if(d3.select(el).select("svg").select("style")[0][0]){ + d3.select(el).select("svg").select("style")[0][0].innerHTML = d3.select(el).select("svg") + .select("style")[0][0].innerHTML + */ + /// sep comment for / in regex .replace(/mermaidChart[0-9]*/gi, "mermaidChart-" + el.id); + /*} + */ + + // set up a container for tasks to perform after completion + // one example would be add callbacks for event handling + // styling + if (!(typeof x.tasks === "undefined") ){ + if ( (typeof x.tasks.length === "undefined") || + (typeof x.tasks === "function" ) ) { + // handle a function not enclosed in array + // should be able to remove once using jsonlite + x.tasks = [x.tasks]; + } + x.tasks.map(function(t){ + // for each tasks add it to the mermaid.tasks with el + t.call(el); + }) + } + + } catch(e) { + // if error look for last processed DiagrammeR + // and send error to the container div + // with pre containing the errors + var processedDg = d3.selectAll(".DiagrammeR[data-processed=true]"); + // select the last + processedDg = d3.select(processedDg[0][processedDg[0].length - 1]) + // remove the svg + processedDg.select("svg").remove(); + + //if dynamic such as shiny remove data-processed + // so mermaid will reprocess and redraw + if (HTMLWidgets.shinyMode) { + el.removeAttribute("data-processed") + } + + processedDg.append("pre").html( ["parse error with " + x.diagram, e.message].join("\n") ) + } + + }, + + resize: function(el, width, height, instance) { + + } + + +}); diff --git a/docs/articles/theophylline_files/DiagrammeR-styles-0.2/styles.css b/docs/articles/theophylline_files/DiagrammeR-styles-0.2/styles.css new file mode 100644 index 0000000..d6446ab --- /dev/null +++ b/docs/articles/theophylline_files/DiagrammeR-styles-0.2/styles.css @@ -0,0 +1,14 @@ +.DiagrammeR,.grViz pre { + white-space: pre-wrap; /* CSS 3 */ + white-space: -moz-pre-wrap; /* Mozilla, since 1999 */ + white-space: -pre-wrap; /* Opera 4-6 */ + white-space: -o-pre-wrap; /* Opera 7 */ + word-wrap: break-word; /* Internet Explorer 5.5+ */ +} + +.DiagrammeR g .label { + font-family: Helvetica; + font-size: 14px; + color: #333333; +} + diff --git a/docs/articles/theophylline_files/chromatography-0.1/LICENSE b/docs/articles/theophylline_files/chromatography-0.1/LICENSE new file mode 100644 index 0000000..ea86fbd --- /dev/null +++ b/docs/articles/theophylline_files/chromatography-0.1/LICENSE @@ -0,0 +1,22 @@ +The MIT License (MIT) + +Copyright (c) 2015 We Are Visualizers + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + diff --git a/docs/articles/theophylline_files/chromatography-0.1/chromatography.js b/docs/articles/theophylline_files/chromatography-0.1/chromatography.js new file mode 100644 index 0000000..bd25546 --- /dev/null +++ b/docs/articles/theophylline_files/chromatography-0.1/chromatography.js @@ -0,0 +1,1105 @@ +(function () { + + var Categories, Color, ColorScale, chromato, CSSColors, Ramp, root, type, _ref, _ref2, _ref3; + var __hasProp = Object.prototype.hasOwnProperty, __extends = function(child, parent) { for (var key in parent) { if (__hasProp.call(parent, key)) child[key] = parent[key]; } function ctor() { this.constructor = child; } ctor.prototype = parent.prototype; child.prototype = new ctor; child.__super__ = parent.prototype; return child; }; + + root = typeof exports !== 'undefined' && exports !== null ? exports : this; + + chromato = (_ref = root.chromato) != null ? _ref : root.chromato = {}; + + if (typeof module !== 'undefined' && module !== null) module.exports = chromato; + + Color = (function() { + function Color(x, y, z, m) { + var me, _ref2; + me = this; + if (!(x != null) && !(y != null) && !(z != null) && !(m != null)) { + x = [255, 0, 255]; + } + if (type(x) === 'array' && x.length === 3) { + if (m == null) m = y; + _ref2 = x, x = _ref2[0], y = _ref2[1], z = _ref2[2]; + } + if (type(x) === 'string') { + m = 'hex'; + } else { + if (m == null) m = 'rgb'; + } + if (m === 'rgb') { + me.rgb = [x, y, z]; + } else if (m === 'hsl') { + me.rgb = Color.hsl2rgb(x, y, z); + } else if (m === 'hsv') { + me.rgb = Color.hsv2rgb(x, y, z); + } else if (m === 'hex') { + me.rgb = Color.hex2rgb(x); + } else if (m === 'lab') { + me.rgb = Color.lab2rgb(x, y, z); + } else if (m === 'hcl') { + me.rgb = Color.hcl2rgb(x, y, z); + } else if (m === 'hsi') { + me.rgb = Color.hsi2rgb(x, y, z); + } + } + + Color.prototype.hex = function() { + return Color.rgb2hex(this.rgb); + }; + + Color.prototype.toString = function() { + return this.hex(); + }; + + Color.prototype.hsl = function() { + return Color.rgb2hsl(this.rgb); + }; + + Color.prototype.hsv = function() { + return Color.rgb2hsv(this.rgb); + }; + + Color.prototype.lab = function() { + return Color.rgb2lab(this.rgb); + }; + + Color.prototype.hcl = function() { + return Color.rgb2hcl(this.rgb); + }; + + Color.prototype.hsi = function() { + return Color.rgb2hsi(this.rgb); + }; + + Color.prototype.interpolate = function(f, col, m) { + var dh, hue, hue0, hue1, lbv, lbv0, lbv1, me, sat, sat0, sat1, xyz0, xyz1; + me = this; + if (m == null) m = 'rgb'; + if (type(col) === 'string') col = new Color(col); + if (m === 'hsl' || m === 'hsv' || m === 'hcl' || m === 'hsi') { + if (m === 'hsl') { + xyz0 = me.hsl(); + xyz1 = col.hsl(); + } else if (m === 'hsv') { + xyz0 = me.hsv(); + xyz1 = col.hsv(); + } else if (m === 'hcl') { + xyz0 = me.hcl(); + xyz1 = col.hcl(); + } else if (m === 'hsi') { + xyz0 = me.hsi(); + xyz1 = col.hsi(); + } + hue0 = xyz0[0], sat0 = xyz0[1], lbv0 = xyz0[2]; + hue1 = xyz1[0], sat1 = xyz1[1], lbv1 = xyz1[2]; + if (!isNaN(hue0) && !isNaN(hue1)) { + if (hue1 > hue0 && hue1 - hue0 > 180) { + dh = hue1 - (hue0 + 360); + } else if (hue1 < hue0 && hue0 - hue1 > 180) { + dh = hue1 + 360 - hue0; + } else { + dh = hue1 - hue0; + } + hue = hue0 + f * dh; + } else if (!isNaN(hue0)) { + hue = hue0; + if (lbv1 === 1 || lbv1 === 0) sat = sat0; + } else if (!isNaN(hue1)) { + hue = hue1; + if (lbv0 === 1 || lbv0 === 0) sat = sat1; + } else { + hue = void 0; + } + if (sat == null) sat = sat0 + f * (sat1 - sat0); + lbv = lbv0 + f * (lbv1 - lbv0); + return new Color(hue, sat, lbv, m); + } else if (m === 'rgb') { + xyz0 = me.rgb; + xyz1 = col.rgb; + return new Color(xyz0[0] + f * (xyz1[0] - xyz0[0]), xyz0[1] + f * (xyz1[1] - xyz0[1]), xyz0[2] + f * (xyz1[2] - xyz0[2]), m); + } else if (m === 'lab') { + xyz0 = me.lab(); + xyz1 = col.lab(); + return new Color(xyz0[0] + f * (xyz1[0] - xyz0[0]), xyz0[1] + f * (xyz1[1] - xyz0[1]), xyz0[2] + f * (xyz1[2] - xyz0[2]), m); + } else { + throw m + ' is not supported as a color mode'; + } + }; + return Color; + })(); + + Color.hex2rgb = function(hex) { + var b, g, r, u; + if (!hex.match(/^#?([A-Fa-f0-9]{6}|[A-Fa-f0-9]{3})$/)) { + if ((chromato.colors != null) && chromato.colors[hex]) { + hex = chromato.colors[hex]; + } else { + throw 'This color format is unknown: ' + hex; + } + } + if (hex.length === 4 || hex.length === 7) hex = hex.substr(1); + if (hex.length === 3) { + hex = hex[0] + hex[0] + hex[1] + hex[1] + hex[2] + hex[2]; + } + u = parseInt(hex, 16); + r = u >> 16; + g = u >> 8 & 0xFF; + b = u & 0xFF; + return [r, g, b]; + }; + + Color.rgb2hex = function(r, g, b) { + var str, u, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + u = r << 16 | g << 8 | b; + str = '000000' + u.toString(16).toUpperCase(); + return '#' + str.substr(str.length - 6); + }; + + Color.hsv2rgb = function(h, s, v) { + var b, f, g, i, l, p, q, r, t, _ref2, _ref3, _ref4, _ref5, _ref6, _ref7, _ref8; + if (type(h) === 'array' && h.length === 3) { + _ref2 = h, h = _ref2[0], s = _ref2[1], l = _ref2[2]; + } + v *= 255; + if (s === 0 && isNaN(h)) { + r = g = b = v; + } else { + if (h === 360) h = 0; + if (h > 360) h -= 360; + if (h < 0) h += 360; + h /= 60; + i = Math.floor(h); + f = h - i; + p = v * (1 - s); + q = v * (1 - s * f); + t = v * (1 - s * (1 - f)); + switch (i) { + case 0: + _ref3 = [v, t, p], r = _ref3[0], g = _ref3[1], b = _ref3[2]; + break; + case 1: + _ref4 = [q, v, p], r = _ref4[0], g = _ref4[1], b = _ref4[2]; + break; + case 2: + _ref5 = [p, v, t], r = _ref5[0], g = _ref5[1], b = _ref5[2]; + break; + case 3: + _ref6 = [p, q, v], r = _ref6[0], g = _ref6[1], b = _ref6[2]; + break; + case 4: + _ref7 = [t, p, v], r = _ref7[0], g = _ref7[1], b = _ref7[2]; + break; + case 5: + _ref8 = [v, p, q], r = _ref8[0], g = _ref8[1], b = _ref8[2]; + } + } + r = Math.round(r); + g = Math.round(g); + b = Math.round(b); + return [r, g, b]; + }; + + Color.rgb2hsv = function(r, g, b) { + var delta, h, max, min, s, v, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + min = Math.min(r, g, b); + max = Math.max(r, g, b); + delta = max - min; + v = max / 255.0; + s = delta / max; + if (s === 0) { + h = void 0; + s = 0; + } else { + if (r === max) h = (g - b) / delta; + if (g === max) h = 2 + (b - r) / delta; + if (b === max) h = 4 + (r - g) / delta; + h *= 60; + if (h < 0) h += 360; + } + return [h, s, v]; + }; + + Color.hsl2rgb = function(h, s, l) { + var b, c, g, i, r, t1, t2, t3, _ref2, _ref3; + if (h !== void 0 && h.length === 3) { + _ref2 = h, h = _ref2[0], s = _ref2[1], l = _ref2[2]; + } + if (s === 0) { + r = g = b = l * 255; + } else { + t3 = [0, 0, 0]; + c = [0, 0, 0]; + t2 = l < 0.5 ? l * (1 + s) : l + s - l * s; + t1 = 2 * l - t2; + h /= 360; + t3[0] = h + 1 / 3; + t3[1] = h; + t3[2] = h - 1 / 3; + for (i = 0; i <= 2; i++) { + if (t3[i] < 0) t3[i] += 1; + if (t3[i] > 1) t3[i] -= 1; + if (6 * t3[i] < 1) { + c[i] = t1 + (t2 - t1) * 6 * t3[i]; + } else if (2 * t3[i] < 1) { + c[i] = t2; + } else if (3 * t3[i] < 2) { + c[i] = t1 + (t2 - t1) * ((2 / 3) - t3[i]) * 6; + } else { + c[i] = t1; + } + } + _ref3 = [Math.round(c[0] * 255), Math.round(c[1] * 255), Math.round(c[2] * 255)], r = _ref3[0], g = _ref3[1], b = _ref3[2]; + } + return [r, g, b]; + }; + + Color.rgb2hsl = function(r, g, b) { + var h, l, max, min, s, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + r /= 255; + g /= 255; + b /= 255; + min = Math.min(r, g, b); + max = Math.max(r, g, b); + l = (max + min) / 2; + if (max === min) { + s = 0; + h = void 0; + } else { + s = l < 0.5 ? (max - min) / (max + min) : (max - min) / (2 - max - min); + } + if (r === max) { + h = (g - b) / (max - min); + } else if (g === max) { + h = 2 + (b - r) / (max - min); + } else if (b === max) { + h = 4 + (r - g) / (max - min); + } + h *= 60; + if (h < 0) h += 360; + return [h, s, l]; + }; + + Color.lab2xyz = function(l, a, b) { + var finv, ill, sl, x, y, z, _ref2; + if (type(l) === 'array' && l.length === 3) { + _ref2 = l, l = _ref2[0], a = _ref2[1], b = _ref2[2]; + } + finv = function(t) { + if (t > (6.0 / 29.0)) { + return t * t * t; + } else { + return 3 * (6.0 / 29.0) * (6.0 / 29.0) * (t - 4.0 / 29.0); + } + }; + sl = (l + 0.16) / 1.16; + ill = [0.96421, 1.00000, 0.82519]; + y = ill[1] * finv(sl); + x = ill[0] * finv(sl + (a / 5.0)); + z = ill[2] * finv(sl - (b / 2.0)); + return [x, y, z]; + }; + + Color.xyz2rgb = function(x, y, z) { + var b, bl, clip, correct, g, gl, r, rl, _ref2, _ref3; + if (type(x) === 'array' && x.length === 3) { + _ref2 = x, x = _ref2[0], y = _ref2[1], z = _ref2[2]; + } + rl = 3.2406 * x - 1.5372 * y - 0.4986 * z; + gl = -0.9689 * x + 1.8758 * y + 0.0415 * z; + bl = 0.0557 * x - 0.2040 * y + 1.0570 * z; + clip = Math.min(rl, gl, bl) < -0.001 || Math.max(rl, gl, bl) > 1.001; + if (clip) { + rl = rl < 0.0 ? 0.0 : rl > 1.0 ? 1.0 : rl; + gl = gl < 0.0 ? 0.0 : gl > 1.0 ? 1.0 : gl; + bl = bl < 0.0 ? 0.0 : bl > 1.0 ? 1.0 : bl; + } + if (clip) { + _ref3 = [void 0, void 0, void 0], rl = _ref3[0], gl = _ref3[1], bl = _ref3[2]; + } + correct = function(cl) { + var a; + a = 0.055; + if (cl <= 0.0031308) { + return 12.92 * cl; + } else { + return (1 + a) * Math.pow(cl, 1 / 2.4) - a; + } + }; + r = Math.round(255.0 * correct(rl)); + g = Math.round(255.0 * correct(gl)); + b = Math.round(255.0 * correct(bl)); + return [r, g, b]; + }; + + Color.lab2rgb = function(l, a, b) { + var x, y, z, _ref2, _ref3, _ref4; + if (l !== void 0 && l.length === 3) { + _ref2 = l, l = _ref2[0], a = _ref2[1], b = _ref2[2]; + } + if (l !== void 0 && l.length === 3) { + _ref3 = l, l = _ref3[0], a = _ref3[1], b = _ref3[2]; + } + _ref4 = Color.lab2xyz(l, a, b), x = _ref4[0], y = _ref4[1], z = _ref4[2]; + return Color.xyz2rgb(x, y, z); + }; + + Color.hcl2lab = function(c, s, l) { + var L, tau_const, a, angle, b, r, _ref2; + if (type(c) === 'array' && c.length === 3) { + _ref2 = c, c = _ref2[0], s = _ref2[1], l = _ref2[2]; + } + c /= 360.0; + tau_const = 6.283185307179586476925287; + L = l * 0.61 + 0.09; + angle = tau_const / 6.0 - c * tau_const; + r = (l * 0.311 + 0.125) * s; + a = Math.sin(angle) * r; + b = Math.cos(angle) * r; + return [L, a, b]; + }; + + Color.hcl2rgb = function(c, s, l) { + var L, a, b, _ref2; + _ref2 = Color.hcl2lab(c, s, l), L = _ref2[0], a = _ref2[1], b = _ref2[2]; + return Color.lab2rgb(L, a, b); + }; + + Color.rgb2xyz = function(r, g, b) { + var bl, correct, gl, rl, x, y, z, _ref2; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + correct = function(c) { + var a; + a = 0.055; + if (c <= 0.04045) { + return c / 12.92; + } else { + return Math.pow((c + a) / (1 + a), 2.4); + } + }; + rl = correct(r / 255.0); + gl = correct(g / 255.0); + bl = correct(b / 255.0); + x = 0.4124 * rl + 0.3576 * gl + 0.1805 * bl; + y = 0.2126 * rl + 0.7152 * gl + 0.0722 * bl; + z = 0.0193 * rl + 0.1192 * gl + 0.9505 * bl; + return [x, y, z]; + }; + + Color.xyz2lab = function(x, y, z) { + var a, b, f, ill, l, _ref2; + if (x !== void 0 && x.length === 3) { + _ref2 = x, x = _ref2[0], y = _ref2[1], z = _ref2[2]; + } + ill = [0.96421, 1.00000, 0.82519]; + f = function(t) { + if (t > Math.pow(6.0 / 29.0, 3)) { + return Math.pow(t, 1 / 3); + } else { + return (1 / 3) * (29 / 6) * (29 / 6) * t + 4.0 / 29.0; + } + }; + l = 1.16 * f(y / ill[1]) - 0.16; + a = 5 * (f(x / ill[0]) - f(y / ill[1])); + b = 2 * (f(y / ill[1]) - f(z / ill[2])); + return [l, a, b]; + }; + + Color.rgb2lab = function(r, g, b) { + var x, y, z, _ref2, _ref3; + if (r !== void 0 && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + _ref3 = Color.rgb2xyz(r, g, b), x = _ref3[0], y = _ref3[1], z = _ref3[2]; + return Color.xyz2lab(x, y, z); + }; + + Color.lab2hcl = function(l, a, b) { + var L, tau_const, angle, c, r, s, _ref2; + if (type(l) === 'array' && l.length === 3) { + _ref2 = l, l = _ref2[0], a = _ref2[1], b = _ref2[2]; + } + L = l; + l = (l - 0.09) / 0.61; + r = Math.sqrt(a * a + b * b); + s = r / (l * 0.311 + 0.125); + tau_const = 6.283185307179586476925287; + angle = Math.atan2(a, b); + c = (tau_const / 6 - angle) / tau_const; + c *= 360; + if (c < 0) c += 360; + return [c, s, l]; + }; + + Color.rgb2hcl = function(r, g, b) { + var a, l, _ref2, _ref3; + if (type(r) === 'array' && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + _ref3 = Color.rgb2lab(r, g, b), l = _ref3[0], a = _ref3[1], b = _ref3[2]; + return Color.lab2hcl(l, a, b); + }; + + Color.rgb2hsi = function(r, g, b) { + var pi_const_x2, h, i, min, s, _ref2; + if (type(r) === 'array' && r.length === 3) { + _ref2 = r, r = _ref2[0], g = _ref2[1], b = _ref2[2]; + } + pi_const_x2 = Math.PI * 2; + r /= 255; + g /= 255; + b /= 255; + min = Math.min(r, g, b); + i = (r + g + b) / 3; + s = 1 - min / i; + if (s === 0) { + h = 0; + } else { + h = ((r - g) + (r - b)) / 2; + h /= Math.sqrt((r - g) * (r - g) + (r - b) * (g - b)); + h = Math.acos(h); + if (b > g) h = pi_const_x2 - h; + h /= pi_const_x2; + } + return [h * 360, s, i]; + }; + + Color.hsi2rgb = function(h, s, i) { + var pi_const_div3, pi_const_x2, b, cos, g, r, _ref2; + if (type(h) === 'array' && h.length === 3) { + _ref2 = h, h = _ref2[0], s = _ref2[1], i = _ref2[2]; + } + pi_const_x2 = Math.PI * 2; + pi_const_div3 = Math.PI / 3; + cos = Math.cos; + if (h < 0) h += 360; + if (h > 360) h -= 360; + h /= 360; + if (h < 1 / 3) { + b = (1 - s) / 3; + r = (1 + s * cos(pi_const_x2 * h) / cos(pi_const_div3 - pi_const_x2 * h)) / 3; + g = 1 - (b + r); + } else if (h < 2 / 3) { + h -= 1 / 3; + r = (1 - s) / 3; + g = (1 + s * cos(pi_const_x2 * h) / cos(pi_const_div3 - pi_const_x2 * h)) / 3; + b = 1 - (r + g); + } else { + h -= 2 / 3; + g = (1 - s) / 3; + b = (1 + s * cos(pi_const_x2 * h) / cos(pi_const_div3 - pi_const_x2 * h)) / 3; + r = 1 - (g + b); + } + r = i * r * 3; + g = i * g * 3; + b = i * b * 3; + return [r * 255, g * 255, b * 255]; + }; + + chromato.Color = Color; + + chromato.hsl = function(h, s, l) { + return new Color(h, s, l, 'hsl'); + }; + + chromato.hsv = function(h, s, v) { + return new Color(h, s, v, 'hsv'); + }; + + chromato.rgb = function(r, g, b) { + return new Color(r, g, b, 'rgb'); + }; + + chromato.hex = function(x) { + return new Color(x); + }; + + chromato.lab = function(l, a, b) { + return new Color(l, a, b, 'lab'); + }; + + chromato.hcl = function(c, s, l) { + return new Color(c, s, l, 'hcl'); + }; + + chromato.hsi = function(h, s, i) { + return new Color(h, s, i, 'hsi'); + }; + + chromato.interpolate = function(a, b, f, m) { + if (type(a) === 'string') a = new Color(a); + if (type(b) === 'string') b = new Color(b); + return a.interpolate(f, b, m); + }; + + ColorScale = (function() { + + function ColorScale(opts) { + var c, col, cols, me, _ref2, _ref3, _ref4, _ref5, _ref6, _ref7; + me = this; + me.colors = cols = (_ref2 = opts.colors) != null ? _ref2 : ['#ddd', '#222']; + for (c = 0, _ref3 = cols.length - 1; 0 <= _ref3 ? c <= _ref3 : c >= _ref3; 0 <= _ref3 ? c++ : c--) { + col = cols[c]; + if (type(col) === 'string') cols[c] = new Color(col); + } + if (opts.positions != null) { + me.pos = opts.positions; + } else { + me.pos = []; + for (c = 0, _ref4 = cols.length - 1; 0 <= _ref4 ? c <= _ref4 : c >= _ref4; 0 <= _ref4 ? c++ : c--) { + me.pos.push(c / (cols.length - 1)); + } + } + me.mode = (_ref5 = opts.mode) != null ? _ref5 : 'hsv'; + me.nacol = (_ref6 = opts.nacol) != null ? _ref6 : '#ccc'; + me.setClasses((_ref7 = opts.limits) != null ? _ref7 : [0, 1]); + me; + } + + ColorScale.prototype.getColor = function(value) { + var c, f, f0, me; + me = this; + if (isNaN(value)) return me.nacol; + if (me.classLimits.length > 2) { + c = me.getClass(value); + f = c / (me.numClasses - 1); + } else { + f = f0 = (value - me.min) / (me.max - me.min); + f = Math.min(1, Math.max(0, f)); + } + return me.fColor(f); + }; + + ColorScale.prototype.fColor = function(f) { + var col, cols, i, me, p, _ref2; + me = this; + cols = me.colors; + for (i = 0, _ref2 = me.pos.length - 1; 0 <= _ref2 ? i <= _ref2 : i >= _ref2; 0 <= _ref2 ? i++ : i--) { + p = me.pos[i]; + if (f <= p) { + col = cols[i]; + break; + } + if (f >= p && i === me.pos.length - 1) { + col = cols[i]; + break; + } + if (f > p && f < me.pos[i + 1]) { + f = (f - p) / (me.pos[i + 1] - p); + col = chromato.interpolate(cols[i], cols[i + 1], f, me.mode); + break; + } + } + return col; + }; + + ColorScale.prototype.classifyValue = function(value) { + var i, limits, maxc, minc, n, self; + self = this; + limits = self.classLimits; + if (limits.length > 2) { + n = limits.length - 1; + i = self.getClass(value); + value = limits[i] + (limits[i + 1] - limits[i]) * 0.5; + minc = limits[0]; + maxc = limits[n - 1]; + value = self.min + ((value - minc) / (maxc - minc)) * (self.max - self.min); + } + return value; + }; + + ColorScale.prototype.setClasses = function(limits) { + var me; + if (limits == null) limits = []; + me = this; + me.classLimits = limits; + me.min = limits[0]; + me.max = limits[limits.length - 1]; + if (limits.length === 2) { + return me.numClasses = 0; + } else { + return me.numClasses = limits.length - 1; + } + }; + + ColorScale.prototype.getClass = function(value) { + var i, limits, n, self; + self = this; + limits = self.classLimits; + if (limits != null) { + n = limits.length - 1; + i = 0; + while (i < n && value >= limits[i]) { + i++; + } + return i - 1; + } + }; + + ColorScale.prototype.validValue = function(value) { + return !isNaN(value); + }; + return ColorScale; + })(); + + chromato.ColorScale = ColorScale; + + Ramp = (function() { + __extends(Ramp, ColorScale); + + function Ramp(col0, col1, mode) { + if (col0 == null) col0 = '#fe0000'; + if (col1 == null) col1 = '#feeeee'; + if (mode == null) mode = 'hsl'; + Ramp.__super__.constructor.call(this, [col0, col1], [0, 1], mode); + } + return Ramp; + })(); + + chromato.Ramp = Ramp; + + Categories = (function() { + __extends(Categories, ColorScale); + + function Categories(colors) { + var me; + me = this; + me.colors = colors; + } + + Categories.prototype.parseData = function(data, data_col) {}; + + Categories.prototype.getColor = function(value) { + var me; + me = this; + if (me.colors.hasOwnProperty(value)) { + return me.colors[value]; + } else { + return '#cccccc'; + } + }; + + Categories.prototype.validValue = function(value) { + return this.colors.hasOwnProperty(value); + }; + return Categories; + })(); + + chromato.Categories = Categories; + + CSSColors = (function() { + __extends(CSSColors, ColorScale); + + function CSSColors(name) { + var me; + me = this; + me.name = name; + me.setClasses(7); + me; + } + + CSSColors.prototype.getColor = function(value) { + var c, me; + me = this; + c = me.getClass(value); + return me.name + ' l' + me.numClasses + ' c' + c; + }; + + return CSSColors; + })(); + + chromato.CSSColors = CSSColors; + + if ((_ref2 = chromato.scales) == null) chromato.scales = {}; + + chromato.limits = function(data, mode, num, prop) { + var assignments, best, centroids, cluster, clusterSizes, dist, i, j, k, kClusters, limits, max, min, mindist, n, nb_iters, newCentroids, p, pb, pr, repeat, row, sum, tmpKMeansBreaks, val, value, values, _i, _j, _k, _len, _len2, _len3, _ref10, _ref11, _ref12, _ref13, _ref14, _ref15, _ref16, _ref3, _ref4, _ref5, _ref6, _ref7, _ref8, _ref9; + if (mode == null) mode = 'equal'; + if (num == null) num = 7; + if (prop == null) prop = null; + min = Number.MAX_VALUE; + max = Number.MAX_VALUE * -1; + sum = 0; + values = []; + if (type(data) === 'array') { + if (type(data[0]) !== 'object' && type(data[0]) !== 'array') { + for (_i = 0, _len = data.length; _i < _len; _i++) { + val = data[_i]; + if (!isNaN(val)) values.push(Number(val)); + } + } else { + for (_j = 0, _len2 = data.length; _j < _len2; _j++) { + row = data[_j]; + values.push(Number(row[prop])); + } + } + } else if (type(data) === 'object') { + for (k in data) { + val = data[k]; + if (type(val) === 'object' && type(prop) === 'string') { + if (!isNaN(val[prop])) values.push(Number(val[prop])); + } else if (type(val) === 'array' && type(prop) === 'number') { + if (!isNaN(val[prop])) values.push(Number(val[prop])); + } else if (type(val) === 'number') { + if (!isNaN(val)) values.push(Number(val)); + } + } + } + for (_k = 0, _len3 = values.length; _k < _len3; _k++) { + val = values[_k]; + if (!!isNaN(val)) continue; + if (val < min) min = val; + if (val > max) max = val; + sum += val; + } + values = values.sort(function(a, b) { + return a - b; + }); + limits = []; + if (mode.substr(0, 1) === 'c') { + limits.push(min); + limits.push(max); + } + if (mode.substr(0, 1) === 'e') { + limits.push(min); + for (i = 1, _ref3 = num - 1; 1 <= _ref3 ? i <= _ref3 : i >= _ref3; 1 <= _ref3 ? i++ : i--) { + limits.push(min + (i / num) * (max - min)); + } + limits.push(max); + } else if (mode.substr(0, 1) === 'q') { + limits.push(min); + for (i = 1, _ref4 = num - 1; 1 <= _ref4 ? i <= _ref4 : i >= _ref4; 1 <= _ref4 ? i++ : i--) { + p = values.length * i / num; + pb = Math.floor(p); + if (pb === p) { + limits.push(values[pb]); + } else { + pr = p - pb; + limits.push(values[pb] * pr + values[pb + 1] * (1 - pr)); + } + } + limits.push(max); + } else if (mode.substr(0, 1) === 'k') { + n = values.length; + assignments = new Array(n); + clusterSizes = new Array(num); + repeat = true; + nb_iters = 0; + centroids = null; + centroids = []; + centroids.push(min); + for (i = 1, _ref5 = num - 1; 1 <= _ref5 ? i <= _ref5 : i >= _ref5; 1 <= _ref5 ? i++ : i--) { + centroids.push(min + (i / num) * (max - min)); + } + centroids.push(max); + while (repeat) { + for (j = 0, _ref6 = num - 1; 0 <= _ref6 ? j <= _ref6 : j >= _ref6; 0 <= _ref6 ? j++ : j--) { + clusterSizes[j] = 0; + } + for (i = 0, _ref7 = n - 1; 0 <= _ref7 ? i <= _ref7 : i >= _ref7; 0 <= _ref7 ? i++ : i--) { + value = values[i]; + mindist = Number.MAX_VALUE; + for (j = 0, _ref8 = num - 1; 0 <= _ref8 ? j <= _ref8 : j >= _ref8; 0 <= _ref8 ? j++ : j--) { + dist = Math.abs(centroids[j] - value); + if (dist < mindist) { + mindist = dist; + best = j; + } + } + clusterSizes[best]++; + assignments[i] = best; + } + newCentroids = new Array(num); + for (j = 0, _ref9 = num - 1; 0 <= _ref9 ? j <= _ref9 : j >= _ref9; 0 <= _ref9 ? j++ : j--) { + newCentroids[j] = null; + } + for (i = 0, _ref10 = n - 1; 0 <= _ref10 ? i <= _ref10 : i >= _ref10; 0 <= _ref10 ? i++ : i--) { + cluster = assignments[i]; + if (newCentroids[cluster] === null) { + newCentroids[cluster] = values[i]; + } else { + newCentroids[cluster] += values[i]; + } + } + for (j = 0, _ref11 = num - 1; 0 <= _ref11 ? j <= _ref11 : j >= _ref11; 0 <= _ref11 ? j++ : j--) { + newCentroids[j] *= 1 / clusterSizes[j]; + } + repeat = false; + for (j = 0, _ref12 = num - 1; 0 <= _ref12 ? j <= _ref12 : j >= _ref12; 0 <= _ref12 ? j++ : j--) { + if (newCentroids[j] !== centroids[i]) { + repeat = true; + break; + } + } + centroids = newCentroids; + nb_iters++; + if (nb_iters > 200) repeat = false; + } + kClusters = {}; + for (j = 0, _ref13 = num - 1; 0 <= _ref13 ? j <= _ref13 : j >= _ref13; 0 <= _ref13 ? j++ : j--) { + kClusters[j] = []; + } + for (i = 0, _ref14 = n - 1; 0 <= _ref14 ? i <= _ref14 : i >= _ref14; 0 <= _ref14 ? i++ : i--) { + cluster = assignments[i]; + kClusters[cluster].push(values[i]); + } + tmpKMeansBreaks = []; + for (j = 0, _ref15 = num - 1; 0 <= _ref15 ? j <= _ref15 : j >= _ref15; 0 <= _ref15 ? j++ : j--) { + tmpKMeansBreaks.push(kClusters[j][0]); + tmpKMeansBreaks.push(kClusters[j][kClusters[j].length - 1]); + } + tmpKMeansBreaks = tmpKMeansBreaks.sort(function(a, b) { + return a - b; + }); + limits.push(tmpKMeansBreaks[0]); + for (i = 1, _ref16 = tmpKMeansBreaks.length - 1; i <= _ref16; i += 2) { + if (!isNaN(tmpKMeansBreaks[i])) limits.push(tmpKMeansBreaks[i]); + } + } + return limits; + }; + + root = typeof exports !== 'undefined' && exports !== null ? exports : this; + + type = (function() { + var classToType, name, _i, _len, _ref3; + classToType = {}; + _ref3 = 'Boolean Number String Function Array Date RegExp Undefined Null'.split(' '); + for (_i = 0, _len = _ref3.length; _i < _len; _i++) { + name = _ref3[_i]; + classToType['[object ' + name + ']'] = name.toLowerCase(); + } + return function(obj) { + var strType; + strType = Object.prototype.toString.call(obj); + return classToType[strType] || 'object'; + }; + })(); + + if ((_ref3 = root.type) == null) root.type = type; + + Array.max = function(array) { + return Math.max.apply(Math, array); + }; + + Array.min = function(array) { + return Math.min.apply(Math, array); + }; + +}).call(this); + +var createPalette = { + generate: function(colorsCount, checkColor, forceMode, quality, ultra_precision){ + if(colorsCount === undefined) + colorsCount = 8; + if(checkColor === undefined) + checkColor = function(x){return true;}; + if(forceMode === undefined) + forceMode = false; + if(quality === undefined) + quality = 50; + ultra_precision = ultra_precision || false + + if(forceMode){ + var colors = []; + function checkLab(lab){ + var color = chromato.lab(lab[0], lab[1], lab[2]); + return !isNaN(color.rgb[0]) && color.rgb[0] >= 0 && color.rgb[1] >= 0 && color.rgb[2] >= 0 && color.rgb[0] < 256 && color.rgb[1] < 256 && color.rgb[2] < 256 && checkColor(color); + } + + var vectors = {}; + for(i = 0; i < colorsCount; i++){ + var color = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + while(!checkLab(color)){ + color = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + } + colors.push(color); + } + + var repulsion = 0.3; + var speed = 0.05; + var steps = quality * 20; + while(steps-- > 0){ + for(i = 0; i < colors.length; i++){ + vectors[i] = {dl:0, da:0, db:0}; + } + for(i = 0; i < colors.length; i++){ + var color_a = colors[i]; + for(j = 0; j < i; j++){ + var color_b = colors[j]; + var dl = color_a[0] - color_b[0]; + var da = color_a[1] - color_b[1]; + var db = color_a[2] - color_b[2]; + var d = Math.sqrt(Math.pow(dl, 2) + Math.pow(da, 2) + Math.pow(db, 2)); + if(d > 0){ + var force = repulsion / Math.pow(d, 2); + vectors[i].dl += dl * force / d; + vectors[i].da += da * force / d; + vectors[i].db += db * force / d; + vectors[j].dl -= dl * force / d; + vectors[j].da -= da * force / d; + vectors[j].db -= db * force / d; + } else { + vectors[j].dl += 0.02 - 0.04 * Math.random(); + vectors[j].da += 0.02 - 0.04 * Math.random(); + vectors[j].db += 0.02 - 0.04 * Math.random(); + } + } + } + for(i = 0; i < colors.length; i++){ + var color = colors[i]; + var displacement = speed * Math.sqrt(Math.pow(vectors[i].dl, 2) + Math.pow(vectors[i].da, 2) + Math.pow(vectors[i].db, 2)); + if(displacement>0){ + var ratio = speed * Math.min(0.1, displacement)/displacement; + candidateLab = [color[0] + vectors[i].dl * ratio, color[1] + vectors[i].da * ratio, color[2] + vectors[i].db * ratio]; + if(checkLab(candidateLab)){ + colors[i] = candidateLab; + } + } + } + } + return colors.map(function(lab){return chromato.lab(lab[0], lab[1], lab[2]);}); + } else { + function checkColor2(color){ + var lab = color.lab(); + var hcl = color.hcl(); + return !isNaN(color.rgb[0]) && color.rgb[0] >= 0 && color.rgb[1] >= 0 && color.rgb[2] >= 0 && color.rgb[0]<256 && color.rgb[1]<256 && color.rgb[2]<256 && checkColor(color); + } + var kMeans = []; + for(i = 0; i < colorsCount; i++){ + var lab = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + while(!checkColor2(chromato.lab(lab))){ + lab = [Math.random(), 2 * Math.random() - 1, 2 * Math.random() - 1]; + } + kMeans.push(lab); + } + var colorSamples = []; + var samplesClosest = []; + if(ultra_precision){ + for(l = 0; l <= 1; l += 0.01){ + for(a =- 1; a <= 1; a += 0.05){ + for(b =- 1; b <= 1; b += 0.05){ + if(checkColor2(chromato.lab(l, a, b))){ + colorSamples.push([l, a, b]); + samplesClosest.push(null); + } + } + } + } + } else { + for(l = 0; l <= 1; l += 0.05){ + for(a =- 1; a <= 1; a += 0.1){ + for(b =- 1; b <= 1; b += 0.1){ + if(checkColor2(chromato.lab(l, a, b))){ + colorSamples.push([l, a, b]); + samplesClosest.push(null); + } + } + } + } + } + var steps = quality; + while(steps-- > 0){ + for(i = 0; i < colorSamples.length; i++){ + var lab = colorSamples[i]; + var min_dist = 1000000; + for(j = 0; j < kMeans.length; j++){ + var kMean = kMeans[j]; + var distance = Math.sqrt(Math.pow(lab[0] - kMean[0], 2) + Math.pow(lab[1]-kMean[1], 2) + Math.pow(lab[2] - kMean[2], 2)); + if(distance < min_dist){ + min_dist = distance; + samplesClosest[i] = j; + } + } + } + var freeColorSamples = colorSamples.slice(0); + for(j = 0; j < kMeans.length; j++){ + var count = 0; + var candidateKMean = [0, 0, 0]; + for(i = 0; i < colorSamples.length; i++){ + if(samplesClosest[i] == j){ + count++; + candidateKMean[0] += colorSamples[i][0]; + candidateKMean[1] += colorSamples[i][1]; + candidateKMean[2] += colorSamples[i][2]; + } + } + if(count != 0){ + candidateKMean[0] /= count; + candidateKMean[1] /= count; + candidateKMean[2] /= count; + } + if(count != 0 && checkColor2(chromato.lab(candidateKMean[0], candidateKMean[1], candidateKMean[2])) && candidateKMean){ + kMeans[j] = candidateKMean; + } else { + if(freeColorSamples.length>0){ + var min_dist = 10000000000; + var closest = -1; + for(i = 0; i 0){ + var index = -1; + var maxDistance = -1; + for(candidate_index = 0; candidate_index < colorsToSort.length; candidate_index++){ + var d = 1000000000; + for(i = 0; i < diffColors.length; i++){ + var color_a = colorsToSort[candidate_index].lab(); + var color_b = diffColors[i].lab(); + var dl = color_a[0] - color_b[0]; + var da = color_a[1] - color_b[1]; + var db = color_a[2] - color_b[2]; + d = Math.min(d, Math.sqrt(Math.pow(dl, 2)+Math.pow(da, 2)+Math.pow(db, 2))); + } + if(d > maxDistance){ + maxDistance = d; + index = candidate_index; + } + } + var color = colorsToSort[index]; + diffColors.push(color); + colorsToSort = colorsToSort.filter(function(c,i){return i != index;}); + } + return diffColors; + } +} diff --git a/docs/articles/theophylline_files/d3-3.3.8/LICENSE b/docs/articles/theophylline_files/d3-3.3.8/LICENSE new file mode 100644 index 0000000..8301346 --- /dev/null +++ b/docs/articles/theophylline_files/d3-3.3.8/LICENSE @@ -0,0 +1,26 @@ +Copyright (c) 2010-2014, Michael Bostock +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are met: + +* Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + +* Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +* The name Michael Bostock may not be used to endorse or promote products + derived from this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" +AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE +IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL MICHAEL BOSTOCK BE LIABLE FOR ANY DIRECT, +INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, +BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, +DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY +OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING +NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, +EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. diff --git a/docs/articles/theophylline_files/d3-3.3.8/d3.min.js b/docs/articles/theophylline_files/d3-3.3.8/d3.min.js new file mode 100644 index 0000000..16f0ac6 --- /dev/null +++ b/docs/articles/theophylline_files/d3-3.3.8/d3.min.js @@ -0,0 +1,5 @@ +!function(){function n(n,t){return t>n?-1:n>t?1:n>=t?0:0/0}function t(n){return null===n?0/0:+n}function e(n){return!isNaN(n)}function r(n){return{left:function(t,e,r,u){for(arguments.length<3&&(r=0),arguments.length<4&&(u=t.length);u>r;){var 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index 0000000..1d64ed6 --- /dev/null +++ b/docs/articles/theophylline_files/dagre-0.4.0/LICENSE @@ -0,0 +1,19 @@ +Copyright (c) 2013 Chris Pettitt + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. diff --git a/docs/articles/theophylline_files/dagre-0.4.0/dagre-d3.min.js b/docs/articles/theophylline_files/dagre-0.4.0/dagre-d3.min.js new file mode 100644 index 0000000..7b8a890 --- /dev/null +++ b/docs/articles/theophylline_files/dagre-0.4.0/dagre-d3.min.js @@ -0,0 +1,27 @@ +!function(e){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=e();else if("function"==typeof define&&define.amd)define([],e);else{var f;"undefined"!=typeof window?f=window:"undefined"!=typeof global?f=global:"undefined"!=typeof self&&(f=self),f.dagreD3=e()}}(function(){var define,module,exports;return function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o0}},{}],14:[function(require,module,exports){module.exports=intersectNode;function intersectNode(node,point){return node.intersect(point)}},{}],15:[function(require,module,exports){var intersectLine=require("./intersect-line");module.exports=intersectPolygon;function intersectPolygon(node,polyPoints,point){var x1=node.x;var y1=node.y;var intersections=[];var minX=Number.POSITIVE_INFINITY,minY=Number.POSITIVE_INFINITY;polyPoints.forEach(function(entry){minX=Math.min(minX,entry.x);minY=Math.min(minY,entry.y)});var left=x1-node.width/2-minX;var top=y1-node.height/2-minY;for(var i=0;i1){intersections.sort(function(p,q){var pdx=p.x-point.x,pdy=p.y-point.y,distp=Math.sqrt(pdx*pdx+pdy*pdy),qdx=q.x-point.x,qdy=q.y-point.y,distq=Math.sqrt(qdx*qdx+qdy*qdy);return distpMath.abs(dx)*h){if(dy<0){h=-h}sx=dy===0?0:h*dx/dy;sy=h}else{if(dx<0){w=-w}sx=w;sy=dx===0?0:w*dy/dx}return{x:x+sx,y:y+sy}}},{}],17:[function(require,module,exports){var util=require("../util");module.exports=addHtmlLabel;function addHtmlLabel(root,node){var fo=root.append("foreignObject").attr("width","100000");var div=fo.append("xhtml:div");var label=node.label;switch(typeof label){case"function":div.insert(label);break;case"object":div.insert(function(){return label});break;default:div.html(label)}util.applyStyle(div,node.labelStyle);div.style("display","inline-block");div.style("white-space","nowrap");var w,h;div.each(function(){w=this.clientWidth;h=this.clientHeight});fo.attr("width",w).attr("height",h);return fo}},{"../util":25}],18:[function(require,module,exports){var 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results=collectPredecessors?[]:undefined;_.each(g.inEdges(entry.v),function(edge){var weight=g.edge(edge),uEntry=g.node(edge.v);if(collectPredecessors){results.push({v:edge.v,w:edge.w})}uEntry.out-=weight;assignBucket(buckets,zeroIdx,uEntry)});_.each(g.outEdges(entry.v),function(edge){var weight=g.edge(edge),w=edge.w,wEntry=g.node(w);wEntry["in"]-=weight;assignBucket(buckets,zeroIdx,wEntry)});g.removeNode(entry.v);return results}function buildState(g,weightFn){var fasGraph=new Graph,maxIn=0,maxOut=0;_.each(g.nodes(),function(v){fasGraph.setNode(v,{v:v,"in":0,out:0})});_.each(g.edges(),function(e){var prevWeight=fasGraph.edge(e.v,e.w)||0,weight=weightFn(e),edgeWeight=prevWeight+weight;fasGraph.setEdge(e.v,e.w,edgeWeight);maxOut=Math.max(maxOut,fasGraph.node(e.v).out+=weight);maxIn=Math.max(maxIn,fasGraph.node(e.w)["in"]+=weight)});var buckets=_.range(maxOut+maxIn+3).map(function(){return new List});var zeroIdx=maxIn+1;_.each(fasGraph.nodes(),function(v){assignBucket(buckets,zeroIdx,fasGraph.node(v))});return{graph:fasGraph,buckets:buckets,zeroIdx:zeroIdx}}function assignBucket(buckets,zeroIdx,entry){if(!entry.out){buckets[0].enqueue(entry)}else if(!entry["in"]){buckets[buckets.length-1].enqueue(entry)}else{buckets[entry.out-entry["in"]+zeroIdx].enqueue(entry)}}},{"./data/list":31,"./graphlib":33,"./lodash":36}],35:[function(require,module,exports){"use strict";var _=require("./lodash"),acyclic=require("./acyclic"),normalize=require("./normalize"),rank=require("./rank"),normalizeRanks=require("./util").normalizeRanks,parentDummyChains=require("./parent-dummy-chains"),removeEmptyRanks=require("./util").removeEmptyRanks,nestingGraph=require("./nesting-graph"),addBorderSegments=require("./add-border-segments"),coordinateSystem=require("./coordinate-system"),order=require("./order"),position=require("./position"),util=require("./util"),Graph=require("./graphlib").Graph;module.exports=layout;function layout(g,opts){var time=opts&&opts.debugTiming?util.time:util.notime;time("layout",function(){var layoutGraph=time(" buildLayoutGraph",function(){return buildLayoutGraph(g)});time(" runLayout",function(){runLayout(layoutGraph,time)});time(" updateInputGraph",function(){updateInputGraph(g,layoutGraph)})})}function runLayout(g,time){time(" makeSpaceForEdgeLabels",function(){makeSpaceForEdgeLabels(g)});time(" 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inputLabel=inputGraph.edge(e),layoutLabel=layoutGraph.edge(e);inputLabel.points=layoutLabel.points;if(_.has(layoutLabel,"x")){inputLabel.x=layoutLabel.x;inputLabel.y=layoutLabel.y}});inputGraph.graph().width=layoutGraph.graph().width;inputGraph.graph().height=layoutGraph.graph().height}var graphNumAttrs=["nodesep","edgesep","ranksep","marginx","marginy"],graphDefaults={ranksep:50,edgesep:20,nodesep:50,rankdir:"tb"},graphAttrs=["acyclicer","ranker","rankdir","align"],nodeNumAttrs=["width","height"],nodeDefaults={width:0,height:0},edgeNumAttrs=["minlen","weight","width","height","labeloffset"],edgeDefaults={minlen:1,weight:1,width:0,height:0,labeloffset:10,labelpos:"r"},edgeAttrs=["labelpos"];function buildLayoutGraph(inputGraph){var g=new Graph({multigraph:true,compound:true}),graph=canonicalize(inputGraph.graph());g.setGraph(_.merge({},graphDefaults,selectNumberAttrs(graph,graphNumAttrs),_.pick(graph,graphAttrs)));_.each(inputGraph.nodes(),function(v){var node=canonicalize(inputGraph.node(v));g.setNode(v,_.defaults(selectNumberAttrs(node,nodeNumAttrs),nodeDefaults));g.setParent(v,inputGraph.parent(v))});_.each(inputGraph.edges(),function(e){var edge=canonicalize(inputGraph.edge(e));g.setEdge(e,_.merge({},edgeDefaults,selectNumberAttrs(edge,edgeNumAttrs),_.pick(edge,edgeAttrs)))});return g}function makeSpaceForEdgeLabels(g){var graph=g.graph();graph.ranksep/=2;_.each(g.edges(),function(e){var edge=g.edge(e);edge.minlen*=2;if(edge.labelpos.toLowerCase()!=="c"){if(graph.rankdir==="TB"||graph.rankdir==="BT"){edge.width+=edge.labeloffset}else{edge.height+=edge.labeloffset}}})}function injectEdgeLabelProxies(g){_.each(g.edges(),function(e){var edge=g.edge(e);if(edge.width&&edge.height){var v=g.node(e.v),w=g.node(e.w),label={rank:(w.rank-v.rank)/2+v.rank,e:e};util.addDummyNode(g,"edge-proxy",label,"_ep")}})}function assignRankMinMax(g){var maxRank=0;_.each(g.nodes(),function(v){var node=g.node(v);if(node.borderTop){node.minRank=g.node(node.borderTop).rank;node.maxRank=g.node(node.borderBottom).rank;maxRank=_.max(maxRank,node.maxRank)}});g.graph().maxRank=maxRank}function removeEdgeLabelProxies(g){_.each(g.nodes(),function(v){var node=g.node(v);if(node.dummy==="edge-proxy"){g.edge(node.e).labelRank=node.rank;g.removeNode(v)}})}function translateGraph(g){var minX=Number.POSITIVE_INFINITY,maxX=0,minY=Number.POSITIVE_INFINITY,maxY=0,graphLabel=g.graph(),marginX=graphLabel.marginx||0,marginY=graphLabel.marginy||0;function getExtremes(attrs){var x=attrs.x,y=attrs.y,w=attrs.width,h=attrs.height; +minX=Math.min(minX,x-w/2);maxX=Math.max(maxX,x+w/2);minY=Math.min(minY,y-h/2);maxY=Math.max(maxY,y+h/2)}_.each(g.nodes(),function(v){getExtremes(g.node(v))});_.each(g.edges(),function(e){var edge=g.edge(e);if(_.has(edge,"x")){getExtremes(edge)}});minX-=marginX;minY-=marginY;_.each(g.nodes(),function(v){var node=g.node(v);node.x-=minX;node.y-=minY});_.each(g.edges(),function(e){var edge=g.edge(e);_.each(edge.points,function(p){p.x-=minX;p.y-=minY});if(_.has(edge,"x")){edge.x-=minX}if(_.has(edge,"y")){edge.y-=minY}});graphLabel.width=maxX-minX+marginX;graphLabel.height=maxY-minY+marginY}function assignNodeIntersects(g){_.each(g.edges(),function(e){var edge=g.edge(e),nodeV=g.node(e.v),nodeW=g.node(e.w),p1,p2;if(!edge.points){edge.points=[];p1=nodeW;p2=nodeV}else{p1=edge.points[0];p2=edge.points[edge.points.length-1]}edge.points.unshift(util.intersectRect(nodeV,p1));edge.points.push(util.intersectRect(nodeW,p2))})}function fixupEdgeLabelCoords(g){_.each(g.edges(),function(e){var edge=g.edge(e);if(_.has(edge,"x")){if(edge.labelpos==="l"||edge.labelpos==="r"){edge.width-=edge.labeloffset}switch(edge.labelpos){case"l":edge.x-=edge.width/2+edge.labeloffset;break;case"r":edge.x+=edge.width/2+edge.labeloffset;break}}})}function reversePointsForReversedEdges(g){_.each(g.edges(),function(e){var 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newAttrs}},{"./acyclic":28,"./add-border-segments":29,"./coordinate-system":30,"./graphlib":33,"./lodash":36,"./nesting-graph":37,"./normalize":38,"./order":43,"./parent-dummy-chains":48,"./position":50,"./rank":52,"./util":55}],36:[function(require,module,exports){module.exports=require(20)},{"/Users/cpettitt/projects/dagre-d3/lib/lodash.js":20,lodash:77}],37:[function(require,module,exports){var _=require("./lodash"),util=require("./util");module.exports={run:run,cleanup:cleanup};function run(g){var root=util.addDummyNode(g,"root",{},"_root"),depths=treeDepths(g),height=_.max(depths)-1,nodeSep=2*height+1;g.graph().nestingRoot=root;_.each(g.edges(),function(e){g.edge(e).minlen*=nodeSep});var weight=sumWeights(g)+1;_.each(g.children(),function(child){dfs(g,root,nodeSep,weight,height,depths,child)});g.graph().nodeRankFactor=nodeSep}function dfs(g,root,nodeSep,weight,height,depths,v){var children=g.children(v);if(!children.length){if(v!==root){g.setEdge(root,v,{weight:0,minlen:nodeSep})}return}var top=util.addBorderNode(g,"_bt"),bottom=util.addBorderNode(g,"_bb"),label=g.node(v);g.setParent(top,v);label.borderTop=top;g.setParent(bottom,v);label.borderBottom=bottom;_.each(children,function(child){dfs(g,root,nodeSep,weight,height,depths,child);var childNode=g.node(child),childTop=childNode.borderTop?childNode.borderTop:child,childBottom=childNode.borderBottom?childNode.borderBottom:child,thisWeight=childNode.borderTop?weight:2*weight,minlen=childTop!==childBottom?1:height-depths[v]+1;g.setEdge(top,childTop,{weight:thisWeight,minlen:minlen,nestingEdge:true});g.setEdge(childBottom,bottom,{weight:thisWeight,minlen:minlen,nestingEdge:true})});if(!g.parent(v)){g.setEdge(root,top,{weight:0,minlen:height+depths[v]})}}function treeDepths(g){var depths={};function dfs(v,depth){var children=g.children(v);if(children&&children.length){_.each(children,function(child){dfs(child,depth+1)})}depths[v]=depth}_.each(g.children(),function(v){dfs(v,1)});return depths}function sumWeights(g){return _.reduce(g.edges(),function(acc,e){return acc+g.edge(e).weight},0)}function cleanup(g){var graphLabel=g.graph();g.removeNode(graphLabel.nestingRoot);delete graphLabel.nestingRoot;_.each(g.edges(),function(e){var edge=g.edge(e);if(edge.nestingEdge){g.removeEdge(e)}})}},{"./lodash":36,"./util":55}],38:[function(require,module,exports){"use strict";var _=require("./lodash"),util=require("./util");module.exports={run:run,undo:undo};function run(g){g.graph().dummyChains=[];_.each(g.edges(),function(edge){normalizeEdge(g,edge)})}function normalizeEdge(g,e){var v=e.v,vRank=g.node(v).rank,w=e.w,wRank=g.node(w).rank,name=e.name,edgeLabel=g.edge(e),labelRank=edgeLabel.labelRank;if(wRank===vRank+1)return;g.removeEdge(e);var dummy,attrs,i;for(i=0,++vRank;vRank0){if(index%2){weightSum+=tree[index+1]}index=index-1>>1;tree[index]+=entry.weight}cc+=entry.weight*weightSum}));return cc}},{"../lodash":36}],43:[function(require,module,exports){"use strict";var _=require("../lodash"),initOrder=require("./init-order"),crossCount=require("./cross-count"),sortSubgraph=require("./sort-subgraph"),buildLayerGraph=require("./build-layer-graph"),addSubgraphConstraints=require("./add-subgraph-constraints"),Graph=require("../graphlib").Graph,util=require("../util");module.exports=order;function order(g){var maxRank=util.maxRank(g),downLayerGraphs=buildLayerGraphs(g,_.range(1,maxRank+1),"inEdges"),upLayerGraphs=buildLayerGraphs(g,_.range(maxRank-1,-1,-1),"outEdges");var layering=initOrder(g);assignOrder(g,layering);var bestCC=Number.POSITIVE_INFINITY,best;for(var i=0,lastBest=0;lastBest<4;++i,++lastBest){sweepLayerGraphs(i%2?downLayerGraphs:upLayerGraphs,i%4>=2);layering=util.buildLayerMatrix(g);var cc=crossCount(g,layering);if(cc=vEntry.barycenter){mergeEntries(vEntry,uEntry)}}}function handleOut(vEntry){return function(wEntry){wEntry["in"].push(vEntry);if(--wEntry.indegree===0){sourceSet.push(wEntry)}}}while(sourceSet.length){var entry=sourceSet.pop();entries.push(entry);_.each(entry["in"].reverse(),handleIn(entry));_.each(entry.out,handleOut(entry))}return _.chain(entries).filter(function(entry){return!entry.merged}).map(function(entry){return _.pick(entry,["vs","i","barycenter","weight"])}).value()}function mergeEntries(target,source){var sum=0,weight=0;if(target.weight){sum+=target.barycenter*target.weight;weight+=target.weight}if(source.weight){sum+=source.barycenter*source.weight;weight+=source.weight}target.vs=source.vs.concat(target.vs);target.barycenter=sum/weight;target.weight=weight;target.i=Math.min(source.i,target.i);source.merged=true}},{"../lodash":36}],46:[function(require,module,exports){var _=require("../lodash"),barycenter=require("./barycenter"),resolveConflicts=require("./resolve-conflicts"),sort=require("./sort");module.exports=sortSubgraph;function sortSubgraph(g,v,cg,biasRight){var movable=g.children(v),node=g.node(v),bl=node?node.borderLeft:undefined,br=node?node.borderRight:undefined,subgraphs={};if(bl){movable=_.filter(movable,function(w){return w!==bl&&w!==br})}var barycenters=barycenter(g,movable);_.each(barycenters,function(entry){if(g.children(entry.v).length){var subgraphResult=sortSubgraph(g,entry.v,cg,biasRight);subgraphs[entry.v]=subgraphResult;if(_.has(subgraphResult,"barycenter")){mergeBarycenters(entry,subgraphResult)}}});var entries=resolveConflicts(barycenters,cg);expandSubgraphs(entries,subgraphs);var result=sort(entries,biasRight);if(bl){result.vs=_.flatten([bl,result.vs,br],true);if(g.predecessors(bl).length){var blPred=g.node(g.predecessors(bl)[0]),brPred=g.node(g.predecessors(br)[0]);if(!_.has(result,"barycenter")){result.barycenter=0;result.weight=0}result.barycenter=(result.barycenter*result.weight+blPred.order+brPred.order)/(result.weight+2);result.weight+=2}}return result}function expandSubgraphs(entries,subgraphs){_.each(entries,function(entry){entry.vs=_.flatten(entry.vs.map(function(v){if(subgraphs[v]){return subgraphs[v].vs}return v}),true)})}function mergeBarycenters(target,other){if(!_.isUndefined(target.barycenter)){target.barycenter=(target.barycenter*target.weight+other.barycenter*other.weight)/(target.weight+other.weight);target.weight+=other.weight}else{target.barycenter=other.barycenter;target.weight=other.weight}}},{"../lodash":36,"./barycenter":40,"./resolve-conflicts":45,"./sort":47}],47:[function(require,module,exports){var _=require("../lodash"),util=require("../util");module.exports=sort;function sort(entries,biasRight){var parts=util.partition(entries,function(entry){return _.has(entry,"barycenter")});var sortable=parts.lhs,unsortable=_.sortBy(parts.rhs,function(entry){return-entry.i}),vs=[],sum=0,weight=0,vsIndex=0;sortable.sort(compareWithBias(!!biasRight));vsIndex=consumeUnsortable(vs,unsortable,vsIndex);_.each(sortable,function(entry){vsIndex+=entry.vs.length;vs.push(entry.vs);sum+=entry.barycenter*entry.weight;weight+=entry.weight;vsIndex=consumeUnsortable(vs,unsortable,vsIndex)});var result={vs:_.flatten(vs,true)};if(weight){result.barycenter=sum/weight;result.weight=weight}return result}function consumeUnsortable(vs,unsortable,index){var last;while(unsortable.length&&(last=_.last(unsortable)).i<=index){unsortable.pop();vs.push(last.vs);index++}return index}function compareWithBias(bias){return function(entryV,entryW){if(entryV.barycenterentryW.barycenter){return 1}return!bias?entryV.i-entryW.i:entryW.i-entryV.i}}},{"../lodash":36,"../util":55}],48:[function(require,module,exports){var _=require("./lodash");module.exports=parentDummyChains;function parentDummyChains(g){var postorderNums=postorder(g);_.each(g.graph().dummyChains,function(v){var node=g.node(v),edgeObj=node.edgeObj,pathData=findPath(g,postorderNums,edgeObj.v,edgeObj.w),path=pathData.path,lca=pathData.lca,pathIdx=0,pathV=path[pathIdx],ascending=true;while(v!==edgeObj.w){node=g.node(v);if(ascending){while((pathV=path[pathIdx])!==lca&&g.node(pathV).maxRanklow||lim>postorderNums[parent].lim));lca=parent;parent=w;while((parent=g.parent(parent))!==lca){wPath.push(parent)}return{path:vPath.concat(wPath.reverse()),lca:lca}}function postorder(g){var result={},lim=0;function dfs(v){var low=lim;_.each(g.children(v),dfs);result[v]={low:low,lim:lim++}}_.each(g.children(),dfs);return result}},{"./lodash":36}],49:[function(require,module,exports){"use strict";var _=require("../lodash"),Graph=require("../graphlib").Graph,util=require("../util");module.exports={positionX:positionX,findType1Conflicts:findType1Conflicts,findType2Conflicts:findType2Conflicts,addConflict:addConflict,hasConflict:hasConflict,verticalAlignment:verticalAlignment,horizontalCompaction:horizontalCompaction,alignCoordinates:alignCoordinates,findSmallestWidthAlignment:findSmallestWidthAlignment,balance:balance};function findType1Conflicts(g,layering){var conflicts={};function visitLayer(prevLayer,layer){var k0=0,scanPos=0,prevLayerLength=prevLayer.length,lastNode=_.last(layer);_.each(layer,function(v,i){var w=findOtherInnerSegmentNode(g,v),k1=w?g.node(w).order:prevLayerLength;if(w||v===lastNode){_.each(layer.slice(scanPos,i+1),function(scanNode){_.each(g.predecessors(scanNode),function(u){var uLabel=g.node(u),uPos=uLabel.order;if((uPosnextNorthBorder)){addConflict(conflicts,u,v)}})}})}function visitLayer(north,south){var prevNorthPos=-1,nextNorthPos,southPos=0;_.each(south,function(v,southLookahead){if(g.node(v).dummy==="border"){var predecessors=g.predecessors(v);if(predecessors.length){nextNorthPos=g.node(predecessors[0]).order;scan(south,southPos,southLookahead,prevNorthPos,nextNorthPos);southPos=southLookahead;prevNorthPos=nextNorthPos}}scan(south,southPos,south.length,nextNorthPos,north.length)});return south}_.reduce(layering,visitLayer);return conflicts}function findOtherInnerSegmentNode(g,v){if(g.node(v).dummy){return _.find(g.predecessors(v),function(u){return g.node(u).dummy})}}function addConflict(conflicts,v,w){if(v>w){var tmp=v;v=w;w=tmp}var conflictsV=conflicts[v];if(!conflictsV){conflicts[v]=conflictsV={}}conflictsV[w]=true}function hasConflict(conflicts,v,w){if(v>w){var tmp=v;v=w;w=tmp}return _.has(conflicts[v],w)}function verticalAlignment(g,layering,conflicts,neighborFn){var root={},align={},pos={};_.each(layering,function(layer){_.each(layer,function(v,order){root[v]=v;align[v]=v;pos[v]=order})});_.each(layering,function(layer){var prevIdx=-1;_.each(layer,function(v){var ws=neighborFn(v);if(ws.length){ws=_.sortBy(ws,function(w){return pos[w]});var mp=(ws.length-1)/2;for(var i=Math.floor(mp),il=Math.ceil(mp);i<=il;++i){var w=ws[i];if(align[v]===v&&prevIdxwLabel.lim){tailLabel=wLabel;flip=true}var candidates=_.filter(g.edges(),function(edge){return flip===isDescendant(t,t.node(edge.v),tailLabel)&&flip!==isDescendant(t,t.node(edge.w),tailLabel)});return _.min(candidates,function(edge){return slack(g,edge)})}function exchangeEdges(t,g,e,f){var v=e.v,w=e.w;t.removeEdge(v,w);t.setEdge(f.v,f.w,{});initLowLimValues(t);initCutValues(t,g);updateRanks(t,g)}function updateRanks(t,g){var root=_.find(t.nodes(),function(v){return!g.node(v).parent}),vs=preorder(t,root);vs=vs.slice(1);_.each(vs,function(v){var parent=t.node(v).parent,edge=g.edge(v,parent),flipped=false;if(!edge){edge=g.edge(parent,v);flipped=true}g.node(v).rank=g.node(parent).rank+(flipped?edge.minlen:-edge.minlen)})}function isTreeEdge(tree,u,v){return tree.hasEdge(u,v)}function isDescendant(tree,vLabel,rootLabel){return rootLabel.low<=vLabel.lim&&vLabel.lim<=rootLabel.lim}},{"../graphlib":33,"../lodash":36,"../util":55,"./feasible-tree":51,"./util":54}],54:[function(require,module,exports){"use strict";var _=require("../lodash");module.exports={longestPath:longestPath,slack:slack};function longestPath(g){var visited={};function dfs(v){var label=g.node(v);if(_.has(visited,v)){return label.rank}visited[v]=true;var rank=_.min(_.map(g.outEdges(v),function(e){return dfs(e.w)-g.edge(e).minlen}));if(rank===Number.POSITIVE_INFINITY){rank=0}return label.rank=rank}_.each(g.sources(),dfs)}function slack(g,e){return g.node(e.w).rank-g.node(e.v).rank-g.edge(e).minlen}},{"../lodash":36}],55:[function(require,module,exports){"use strict";var _=require("./lodash"),Graph=require("./graphlib").Graph;module.exports={addDummyNode:addDummyNode,simplify:simplify,asNonCompoundGraph:asNonCompoundGraph,successorWeights:successorWeights,predecessorWeights:predecessorWeights,intersectRect:intersectRect,buildLayerMatrix:buildLayerMatrix,normalizeRanks:normalizeRanks,removeEmptyRanks:removeEmptyRanks,addBorderNode:addBorderNode,maxRank:maxRank,partition:partition,time:time,notime:notime};function addDummyNode(g,type,attrs,name){var v;do{v=_.uniqueId(name)}while(g.hasNode(v));attrs.dummy=type;g.setNode(v,attrs);return v}function simplify(g){var simplified=(new Graph).setGraph(g.graph());_.each(g.nodes(),function(v){simplified.setNode(v,g.node(v))});_.each(g.edges(),function(e){var simpleLabel=simplified.edge(e.v,e.w)||{weight:0,minlen:1},label=g.edge(e);simplified.setEdge(e.v,e.w,{weight:simpleLabel.weight+label.weight,minlen:Math.max(simpleLabel.minlen,label.minlen)})});return simplified}function asNonCompoundGraph(g){var simplified=new Graph({multigraph:g.isMultigraph()}).setGraph(g.graph());_.each(g.nodes(),function(v){if(!g.children(v).length){simplified.setNode(v,g.node(v))}});_.each(g.edges(),function(e){simplified.setEdge(e,g.edge(e))});return simplified}function successorWeights(g){var weightMap=_.map(g.nodes(),function(v){var sucs={};_.each(g.outEdges(v),function(e){sucs[e.w]=(sucs[e.w]||0)+g.edge(e).weight});return sucs});return _.zipObject(g.nodes(),weightMap)}function predecessorWeights(g){var weightMap=_.map(g.nodes(),function(v){var preds={};_.each(g.inEdges(v),function(e){preds[e.v]=(preds[e.v]||0)+g.edge(e).weight});return preds});return _.zipObject(g.nodes(),weightMap)}function intersectRect(rect,point){var x=rect.x;var y=rect.y;var dx=point.x-x;var dy=point.y-y;var w=rect.width/2;var h=rect.height/2;if(!dx&&!dy){throw new Error("Not possible to find intersection inside of the rectangle")}var sx,sy;if(Math.abs(dy)*w>Math.abs(dx)*h){if(dy<0){h=-h}sx=h*dx/dy;sy=h}else{if(dx<0){w=-w}sx=w;sy=w*dy/dx}return{x:x+sx,y:y+sy}}function buildLayerMatrix(g){var layering=_.map(_.range(maxRank(g)+1),function(){return[] +});_.each(g.nodes(),function(v){var node=g.node(v),rank=node.rank;if(!_.isUndefined(rank)){layering[rank][node.order]=v}});return layering}function normalizeRanks(g){var min=_.min(_.map(g.nodes(),function(v){return g.node(v).rank}));_.each(g.nodes(),function(v){var node=g.node(v);if(_.has(node,"rank")){node.rank-=min}})}function removeEmptyRanks(g){var offset=_.min(_.map(g.nodes(),function(v){return g.node(v).rank}));var layers=[];_.each(g.nodes(),function(v){var rank=g.node(v).rank-offset;if(!_.has(layers,rank)){layers[rank]=[]}layers[rank].push(v)});var delta=0,nodeRankFactor=g.graph().nodeRankFactor;_.each(layers,function(vs,i){if(_.isUndefined(vs)&&i%nodeRankFactor!==0){--delta}else if(delta){_.each(vs,function(v){g.node(v).rank+=delta})}})}function addBorderNode(g,prefix,rank,order){var node={width:0,height:0};if(arguments.length>=4){node.rank=rank;node.order=order}return addDummyNode(g,"border",node,prefix)}function maxRank(g){return _.max(_.map(g.nodes(),function(v){var rank=g.node(v).rank;if(!_.isUndefined(rank)){return rank}}))}function partition(collection,fn){var result={lhs:[],rhs:[]};_.each(collection,function(value){if(fn(value)){result.lhs.push(value)}else{result.rhs.push(value)}});return result}function time(name,fn){var start=_.now();try{return fn()}finally{console.log(name+" time: "+(_.now()-start)+"ms")}}function notime(name,fn){return fn()}},{"./graphlib":33,"./lodash":36}],56:[function(require,module,exports){module.exports="0.7.1"},{}],57:[function(require,module,exports){var lib=require("./lib");module.exports={Graph:lib.Graph,json:require("./lib/json"),alg:require("./lib/alg"),version:lib.version}},{"./lib":73,"./lib/alg":64,"./lib/json":74}],58:[function(require,module,exports){var _=require("../lodash");module.exports=components;function components(g){var visited={},cmpts=[],cmpt;function dfs(v){if(_.has(visited,v))return;visited[v]=true;cmpt.push(v);_.each(g.successors(v),dfs);_.each(g.predecessors(v),dfs)}_.each(g.nodes(),function(v){cmpt=[];dfs(v);if(cmpt.length){cmpts.push(cmpt)}});return cmpts}},{"../lodash":75}],59:[function(require,module,exports){var _=require("../lodash");module.exports=dfs;function dfs(g,vs,order){if(!_.isArray(vs)){vs=[vs]}var acc=[],visited={};_.each(vs,function(v){if(!g.hasNode(v)){throw new Error("Graph does not have node: "+v)}doDfs(g,v,order==="post",visited,acc)});return acc}function doDfs(g,v,postorder,visited,acc){if(!_.has(visited,v)){visited[v]=true;if(!postorder){acc.push(v)}_.each(g.neighbors(v),function(w){doDfs(g,w,postorder,visited,acc)});if(postorder){acc.push(v)}}}},{"../lodash":75}],60:[function(require,module,exports){var dijkstra=require("./dijkstra"),_=require("../lodash");module.exports=dijkstraAll;function dijkstraAll(g,weightFunc,edgeFunc){return _.transform(g.nodes(),function(acc,v){acc[v]=dijkstra(g,v,weightFunc,edgeFunc)},{})}},{"../lodash":75,"./dijkstra":61}],61:[function(require,module,exports){var _=require("../lodash"),PriorityQueue=require("../data/priority-queue");module.exports=dijkstra;var DEFAULT_WEIGHT_FUNC=_.constant(1);function dijkstra(g,source,weightFn,edgeFn){return runDijkstra(g,String(source),weightFn||DEFAULT_WEIGHT_FUNC,edgeFn||function(v){return g.outEdges(v)})}function runDijkstra(g,source,weightFn,edgeFn){var results={},pq=new PriorityQueue,v,vEntry;var updateNeighbors=function(edge){var w=edge.v!==v?edge.v:edge.w,wEntry=results[w],weight=weightFn(edge),distance=vEntry.distance+weight;if(weight<0){throw new Error("dijkstra does not allow negative edge weights. "+"Bad edge: "+edge+" Weight: "+weight)}if(distance0){v=pq.removeMin();vEntry=results[v];if(vEntry.distance===Number.POSITIVE_INFINITY){break}edgeFn(v).forEach(updateNeighbors)}return results}},{"../data/priority-queue":71,"../lodash":75}],62:[function(require,module,exports){var _=require("../lodash"),tarjan=require("./tarjan");module.exports=findCycles;function findCycles(g){return _.filter(tarjan(g),function(cmpt){return cmpt.length>1})}},{"../lodash":75,"./tarjan":69}],63:[function(require,module,exports){var _=require("../lodash");module.exports=floydWarshall;var DEFAULT_WEIGHT_FUNC=_.constant(1);function floydWarshall(g,weightFn,edgeFn){return runFloydWarshall(g,weightFn||DEFAULT_WEIGHT_FUNC,edgeFn||function(v){return g.outEdges(v)})}function runFloydWarshall(g,weightFn,edgeFn){var results={},nodes=g.nodes();nodes.forEach(function(v){results[v]={};results[v][v]={distance:0};nodes.forEach(function(w){if(v!==w){results[v][w]={distance:Number.POSITIVE_INFINITY}}});edgeFn(v).forEach(function(edge){var w=edge.v===v?edge.w:edge.v,d=weightFn(edge);results[v][w]={distance:d,predecessor:v}})});nodes.forEach(function(k){var rowK=results[k];nodes.forEach(function(i){var rowI=results[i];nodes.forEach(function(j){var ik=rowI[k];var kj=rowK[j];var ij=rowI[j];var altDistance=ik.distance+kj.distance;if(altDistance0){v=pq.removeMin();if(_.has(parents,v)){result.setEdge(v,parents[v])}else if(init){throw new Error("Input graph is not connected: "+g)}else{init=true}g.nodeEdges(v).forEach(updateNeighbors)}return result}},{"../data/priority-queue":71,"../graph":72,"../lodash":75}],69:[function(require,module,exports){var _=require("../lodash");module.exports=tarjan;function tarjan(g){var index=0,stack=[],visited={},results=[];function dfs(v){var entry=visited[v]={onStack:true,lowlink:index,index:index++};stack.push(v);g.successors(v).forEach(function(w){if(!_.has(visited,w)){dfs(w);entry.lowlink=Math.min(entry.lowlink,visited[w].lowlink)}else if(visited[w].onStack){entry.lowlink=Math.min(entry.lowlink,visited[w].index)}});if(entry.lowlink===entry.index){var cmpt=[],w;do{w=stack.pop();visited[w].onStack=false;cmpt.push(w)}while(v!==w);results.push(cmpt)}}g.nodes().forEach(function(v){if(!_.has(visited,v)){dfs(v)}});return results}},{"../lodash":75}],70:[function(require,module,exports){var _=require("../lodash");module.exports=topsort;topsort.CycleException=CycleException;function topsort(g){var visited={},stack={},results=[];function visit(node){if(_.has(stack,node)){throw new CycleException}if(!_.has(visited,node)){stack[node]=true;visited[node]=true;_.each(g.predecessors(node),visit);delete stack[node];results.push(node)}}_.each(g.sinks(),visit);if(_.size(visited)!==g.nodeCount()){throw new CycleException}return results}function CycleException(){}},{"../lodash":75}],71:[function(require,module,exports){var _=require("../lodash");module.exports=PriorityQueue;function PriorityQueue(){this._arr=[];this._keyIndices={}}PriorityQueue.prototype.size=function(){return this._arr.length};PriorityQueue.prototype.keys=function(){return this._arr.map(function(x){return x.key})};PriorityQueue.prototype.has=function(key){return _.has(this._keyIndices,key)};PriorityQueue.prototype.priority=function(key){var index=this._keyIndices[key];if(index!==undefined){return this._arr[index].priority}};PriorityQueue.prototype.min=function(){if(this.size()===0){throw new Error("Queue underflow")}return this._arr[0].key};PriorityQueue.prototype.add=function(key,priority){var keyIndices=this._keyIndices;key=String(key);if(!_.has(keyIndices,key)){var arr=this._arr;var index=arr.length;keyIndices[key]=index;arr.push({key:key,priority:priority});this._decrease(index);return true}return false};PriorityQueue.prototype.removeMin=function(){this._swap(0,this._arr.length-1);var min=this._arr.pop();delete this._keyIndices[min.key];this._heapify(0);return min.key};PriorityQueue.prototype.decrease=function(key,priority){var index=this._keyIndices[key];if(priority>this._arr[index].priority){throw new Error("New priority is greater than current priority. "+"Key: "+key+" Old: "+this._arr[index].priority+" New: "+priority)}this._arr[index].priority=priority;this._decrease(index)};PriorityQueue.prototype._heapify=function(i){var arr=this._arr;var l=2*i,r=l+1,largest=i;if(l>1;if(arr[parent].priority1){this.setNode(v,value)}else{this.setNode(v)}},this);return this};Graph.prototype.setNode=function(v,value){if(_.has(this._nodes,v)){if(arguments.length>1){this._nodes[v]=value}return this}this._nodes[v]=arguments.length>1?value:this._defaultNodeLabelFn(v);if(this._isCompound){this._parent[v]=GRAPH_NODE;this._children[v]={};this._children[GRAPH_NODE][v]=true}this._in[v]={};this._preds[v]={};this._out[v]={};this._sucs[v]={};++this._nodeCount;return this};Graph.prototype.node=function(v){return this._nodes[v]};Graph.prototype.hasNode=function(v){return _.has(this._nodes,v)};Graph.prototype.removeNode=function(v){var self=this;if(_.has(this._nodes,v)){var removeEdge=function(e){self.removeEdge(self._edgeObjs[e])};delete this._nodes[v];if(this._isCompound){this._removeFromParentsChildList(v);delete this._parent[v];_.each(this.children(v),function(child){this.setParent(child)},this);delete this._children[v]}_.each(_.keys(this._in[v]),removeEdge);delete this._in[v];delete this._preds[v];_.each(_.keys(this._out[v]),removeEdge);delete this._out[v];delete this._sucs[v];--this._nodeCount}return this};Graph.prototype.setParent=function(v,parent){if(!this._isCompound){throw new Error("Cannot set parent in a non-compound graph")}if(_.isUndefined(parent)){parent=GRAPH_NODE}else{for(var ancestor=parent;!_.isUndefined(ancestor);ancestor=this.parent(ancestor)){if(ancestor===v){throw new Error("Setting "+parent+" as parent of "+v+" would create create a cycle")}}this.setNode(parent)}this.setNode(v);this._removeFromParentsChildList(v);this._parent[v]=parent;this._children[parent][v]=true;return this};Graph.prototype._removeFromParentsChildList=function(v){delete 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").addClass(errClass).css("position", "absolute") + .css("top", el.offsetTop) + .css("left", el.offsetLeft) + // setting width can push out the page size, forcing otherwise + // unnecessary scrollbars to appear and making it impossible for + // the element to shrink; so use max-width instead + .css("maxWidth", el.offsetWidth) + .css("height", el.offsetHeight); + errorDiv.text(err.message); + $el.after(errorDiv); + + // Really dumb way to keep the size/position of the error in sync with + // the parent element as the window is resized or whatever. + var intId = setInterval(function() { + if (!errorDiv[0].parentElement) { + clearInterval(intId); + return; + } + errorDiv + .css("top", el.offsetTop) + .css("left", el.offsetLeft) + .css("maxWidth", el.offsetWidth) + .css("height", el.offsetHeight); + }, 500); + } + } + }, + clearError: function(el) { + var $el = $(el); + var display = $el.data("restore-display-mode"); + $el.data("restore-display-mode", null); + + if (display === "inline" || display === "inline-block") { + if (display) + $el.css("display", display); + $(el.nextSibling).filter(".htmlwidgets-error").remove(); + } else if (display === "block"){ + $el.css("visibility", "inherit"); + $(el.nextSibling).filter(".htmlwidgets-error").remove(); + } + }, + sizing: {} + }; + + // Called by widget bindings to register a new type of widget. The definition + // object can contain the following properties: + // - name (required) - A string indicating the binding name, which will be + // used by default as the CSS classname to look for. + // - initialize (optional) - A function(el) that will be called once per + // widget element; if a value is returned, it will be passed as the third + // value to renderValue. + // - renderValue (required) - A function(el, data, initValue) that will be + // called with data. Static contexts will cause this to be called once per + // element; Shiny apps will cause this to be called multiple times per + // element, as the data changes. + window.HTMLWidgets.widget = function(definition) { + if (!definition.name) { + throw new Error("Widget must have a name"); + } + if (!definition.type) { + throw new Error("Widget must have a type"); + } + // Currently we only support output widgets + if (definition.type !== "output") { + throw new Error("Unrecognized widget type '" + definition.type + "'"); + } + // TODO: Verify that .name is a valid CSS classname + + // Support new-style instance-bound definitions. Old-style class-bound + // definitions have one widget "object" per widget per type/class of + // widget; the renderValue and resize methods on such widget objects + // take el and instance arguments, because the widget object can't + // store them. New-style instance-bound definitions have one widget + // object per widget instance; the definition that's passed in doesn't + // provide renderValue or resize methods at all, just the single method + // factory(el, width, height) + // which returns an object that has renderValue(x) and resize(w, h). + // This enables a far more natural programming style for the widget + // author, who can store per-instance state using either OO-style + // instance fields or functional-style closure variables (I guess this + // is in contrast to what can only be called C-style pseudo-OO which is + // what we required before). + if (definition.factory) { + definition = createLegacyDefinitionAdapter(definition); + } + + if (!definition.renderValue) { + throw new Error("Widget must have a renderValue function"); + } + + // For static rendering (non-Shiny), use a simple widget registration + // scheme. We also use this scheme for Shiny apps/documents that also + // contain static widgets. + window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || []; + // Merge defaults into the definition; don't mutate the original definition. + var staticBinding = extend({}, defaults, definition); + overrideMethod(staticBinding, "find", function(superfunc) { + return function(scope) { + var results = superfunc(scope); + // Filter out Shiny outputs, we only want the static kind + return filterByClass(results, "html-widget-output", false); + }; + }); + window.HTMLWidgets.widgets.push(staticBinding); + + if (shinyMode) { + // Shiny is running. Register the definition with an output binding. + // The definition itself will not be the output binding, instead + // we will make an output binding object that delegates to the + // definition. This is because we foolishly used the same method + // name (renderValue) for htmlwidgets definition and Shiny bindings + // but they actually have quite different semantics (the Shiny + // bindings receive data that includes lots of metadata that it + // strips off before calling htmlwidgets renderValue). We can't + // just ignore the difference because in some widgets it's helpful + // to call this.renderValue() from inside of resize(), and if + // we're not delegating, then that call will go to the Shiny + // version instead of the htmlwidgets version. + + // Merge defaults with definition, without mutating either. + var bindingDef = extend({}, defaults, definition); + + // This object will be our actual Shiny binding. + var shinyBinding = new Shiny.OutputBinding(); + + // With a few exceptions, we'll want to simply use the bindingDef's + // version of methods if they are available, otherwise fall back to + // Shiny's defaults. NOTE: If Shiny's output bindings gain additional + // methods in the future, and we want them to be overrideable by + // HTMLWidget binding definitions, then we'll need to add them to this + // list. + delegateMethod(shinyBinding, bindingDef, "getId"); + delegateMethod(shinyBinding, bindingDef, "onValueChange"); + delegateMethod(shinyBinding, bindingDef, "onValueError"); + delegateMethod(shinyBinding, bindingDef, "renderError"); + delegateMethod(shinyBinding, bindingDef, "clearError"); + delegateMethod(shinyBinding, bindingDef, "showProgress"); + + // The find, renderValue, and resize are handled differently, because we + // want to actually decorate the behavior of the bindingDef methods. + + shinyBinding.find = function(scope) { + var results = bindingDef.find(scope); + + // Only return elements that are Shiny outputs, not static ones + var dynamicResults = results.filter(".html-widget-output"); + + // It's possible that whatever caused Shiny to think there might be + // new dynamic outputs, also caused there to be new static outputs. + // Since there might be lots of different htmlwidgets bindings, we + // schedule execution for later--no need to staticRender multiple + // times. + if (results.length !== dynamicResults.length) + scheduleStaticRender(); + + return dynamicResults; + }; + + // Wrap renderValue to handle initialization, which unfortunately isn't + // supported natively by Shiny at the time of this writing. + + shinyBinding.renderValue = function(el, data) { + // Resolve strings marked as javascript literals to objects + if (!(data.evals instanceof Array)) data.evals = [data.evals]; + for (var i = 0; data.evals && i < data.evals.length; i++) { + window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]); + } + if (!bindingDef.renderOnNullValue) { + if (data.x === null) { + el.style.visibility = "hidden"; + return; + } else { + el.style.visibility = "inherit"; + } + } + if (!elementData(el, "initialized")) { + initSizing(el); + + elementData(el, "initialized", true); + if (bindingDef.initialize) { + var result = bindingDef.initialize(el, el.offsetWidth, + el.offsetHeight); + elementData(el, "init_result", result); + } + } + Shiny.renderDependencies(data.deps); + bindingDef.renderValue(el, data.x, elementData(el, "init_result")); + evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]); + }; + + // Only override resize if bindingDef implements it + if (bindingDef.resize) { + shinyBinding.resize = function(el, width, height) { + // Shiny can call resize before initialize/renderValue have been + // called, which doesn't make sense for widgets. + if (elementData(el, "initialized")) { + bindingDef.resize(el, width, height, elementData(el, "init_result")); + } + }; + } + + Shiny.outputBindings.register(shinyBinding, bindingDef.name); + } + }; + + var scheduleStaticRenderTimerId = null; + function scheduleStaticRender() { + if (!scheduleStaticRenderTimerId) { + scheduleStaticRenderTimerId = setTimeout(function() { + scheduleStaticRenderTimerId = null; + window.HTMLWidgets.staticRender(); + }, 1); + } + } + + // Render static widgets after the document finishes loading + // Statically render all elements that are of this widget's class + window.HTMLWidgets.staticRender = function() { + var bindings = window.HTMLWidgets.widgets || []; + forEach(bindings, function(binding) { + var matches = binding.find(document.documentElement); + forEach(matches, function(el) { + var sizeObj = initSizing(el, binding); + + if (hasClass(el, "html-widget-static-bound")) + return; + el.className = el.className + " html-widget-static-bound"; + + var initResult; + if (binding.initialize) { + initResult = binding.initialize(el, + sizeObj ? sizeObj.getWidth() : el.offsetWidth, + sizeObj ? sizeObj.getHeight() : el.offsetHeight + ); + elementData(el, "init_result", initResult); + } + + if (binding.resize) { + var lastSize = {}; + var resizeHandler = function(e) { + var size = { + w: sizeObj ? sizeObj.getWidth() : el.offsetWidth, + h: sizeObj ? sizeObj.getHeight() : el.offsetHeight + }; + if (size.w === 0 && size.h === 0) + return; + if (size.w === lastSize.w && size.h === lastSize.h) + return; + lastSize = size; + binding.resize(el, size.w, size.h, initResult); + }; + + on(window, "resize", resizeHandler); + + // This is needed for cases where we're running in a Shiny + // app, but the widget itself is not a Shiny output, but + // rather a simple static widget. One example of this is + // an rmarkdown document that has runtime:shiny and widget + // that isn't in a render function. Shiny only knows to + // call resize handlers for Shiny outputs, not for static + // widgets, so we do it ourselves. + if (window.jQuery) { + window.jQuery(document).on( + "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets", + resizeHandler + ); + window.jQuery(document).on( + "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets", + resizeHandler + ); + } + + // This is needed for the specific case of ioslides, which + // flips slides between display:none and display:block. + // Ideally we would not have to have ioslide-specific code + // here, but rather have ioslides raise a generic event, + // but the rmarkdown package just went to CRAN so the + // window to getting that fixed may be long. + if (window.addEventListener) { + // It's OK to limit this to window.addEventListener + // browsers because ioslides itself only supports + // such browsers. + on(document, "slideenter", resizeHandler); + on(document, "slideleave", resizeHandler); + } + } + + var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']"); + if (scriptData) { + var data = JSON.parse(scriptData.textContent || scriptData.text); + // Resolve strings marked as javascript literals to objects + if (!(data.evals instanceof Array)) data.evals = [data.evals]; + for (var k = 0; data.evals && k < data.evals.length; k++) { + window.HTMLWidgets.evaluateStringMember(data.x, data.evals[k]); + } + binding.renderValue(el, data.x, initResult); + evalAndRun(data.jsHooks.render, initResult, [el, data.x]); + } + }); + }); + + invokePostRenderHandlers(); + } + + // Wait until after the document has loaded to render the widgets. + if (document.addEventListener) { + document.addEventListener("DOMContentLoaded", function() { + document.removeEventListener("DOMContentLoaded", arguments.callee, false); + window.HTMLWidgets.staticRender(); + }, false); + } else if (document.attachEvent) { + document.attachEvent("onreadystatechange", function() { + if (document.readyState === "complete") { + document.detachEvent("onreadystatechange", arguments.callee); + window.HTMLWidgets.staticRender(); + } + }); + } + + + window.HTMLWidgets.getAttachmentUrl = function(depname, key) { + // If no key, default to the first item + if (typeof(key) === "undefined") + key = 1; + + var link = document.getElementById(depname + "-" + key + "-attachment"); + if (!link) { + throw new Error("Attachment " + depname + "/" + key + " not found in document"); + } + return link.getAttribute("href"); + }; + + window.HTMLWidgets.dataframeToD3 = function(df) { + var names = []; + var length; + for (var name in df) { + if (df.hasOwnProperty(name)) + names.push(name); + if (typeof(df[name]) !== "object" || typeof(df[name].length) === "undefined") { + throw new Error("All fields must be arrays"); + } else if (typeof(length) !== "undefined" && length !== df[name].length) { + throw new Error("All fields must be arrays of the same length"); + } + length = df[name].length; + } + var results = []; + var item; + for (var row = 0; row < length; row++) { + item = {}; + for (var col = 0; col < names.length; col++) { + item[names[col]] = df[names[col]][row]; + } + results.push(item); + } + return results; + }; + + window.HTMLWidgets.transposeArray2D = function(array) { + if (array.length === 0) return array; + var newArray = array[0].map(function(col, i) { + return array.map(function(row) { + return row[i] + }) + }); + return newArray; + }; + // Split value at splitChar, but allow splitChar to be escaped + // using escapeChar. Any other characters escaped by escapeChar + // will be included as usual (including escapeChar itself). + function splitWithEscape(value, splitChar, escapeChar) { + var results = []; + var escapeMode = false; + var currentResult = ""; + for (var pos = 0; pos < value.length; pos++) { + if (!escapeMode) { + if (value[pos] === splitChar) { + results.push(currentResult); + currentResult = ""; + } else if (value[pos] === escapeChar) { + escapeMode = true; + } else { + currentResult += value[pos]; + } + } else { + currentResult += value[pos]; + escapeMode = false; + } + } + if (currentResult !== "") { + results.push(currentResult); + } + return results; + } + // Function authored by Yihui/JJ Allaire + window.HTMLWidgets.evaluateStringMember = function(o, member) { + var parts = splitWithEscape(member, '.', '\\'); + for (var i = 0, l = parts.length; i < l; i++) { + var part = parts[i]; + // part may be a character or 'numeric' member name + if (o !== null && typeof o === "object" && part in o) { + if (i == (l - 1)) { // if we are at the end of the line then evalulate + if (typeof o[part] === "string") + o[part] = eval("(" + o[part] + ")"); + } else { // otherwise continue to next embedded object + o = o[part]; + } + } + } + }; + + // Retrieve the HTMLWidget instance (i.e. the return value of an + // HTMLWidget binding's initialize() or factory() function) + // associated with an element, or null if none. + window.HTMLWidgets.getInstance = function(el) { + return elementData(el, "init_result"); + }; + + // Finds the first element in the scope that matches the selector, + // and returns the HTMLWidget instance (i.e. the return value of + // an HTMLWidget binding's initialize() or factory() function) + // associated with that element, if any. If no element matches the + // selector, or the first matching element has no HTMLWidget + // instance associated with it, then null is returned. + // + // The scope argument is optional, and defaults to window.document. + window.HTMLWidgets.find = function(scope, selector) { + if (arguments.length == 1) { + selector = scope; + scope = document; + } + + var el = scope.querySelector(selector); + if (el === null) { + return null; + } else { + return window.HTMLWidgets.getInstance(el); + } + }; + + // Finds all elements in the scope that match the selector, and + // returns the HTMLWidget instances (i.e. the return values of + // an HTMLWidget binding's initialize() or factory() function) + // associated with the elements, in an array. If elements that + // match the selector don't have an associated HTMLWidget + // instance, the returned array will contain nulls. + // + // The scope argument is optional, and defaults to window.document. + window.HTMLWidgets.findAll = function(scope, selector) { + if (arguments.length == 1) { + selector = scope; + scope = document; + } + + var nodes = scope.querySelectorAll(selector); + var results = []; + for (var i = 0; i < nodes.length; i++) { + results.push(window.HTMLWidgets.getInstance(nodes[i])); + } + return results; + }; + + var postRenderHandlers = []; + function invokePostRenderHandlers() { + while (postRenderHandlers.length) { + var handler = postRenderHandlers.shift(); + if (handler) { + handler(); + } + } + } + + // Register the given callback function to be invoked after the + // next time static widgets are rendered. + window.HTMLWidgets.addPostRenderHandler = function(callback) { + postRenderHandlers.push(callback); + }; + + // Takes a new-style instance-bound definition, and returns an + // old-style class-bound definition. This saves us from having + // to rewrite all the logic in this file to accomodate both + // types of definitions. + function createLegacyDefinitionAdapter(defn) { + var result = { + name: defn.name, + type: defn.type, + initialize: function(el, width, height) { + return defn.factory(el, width, height); + }, + renderValue: function(el, x, instance) { + return instance.renderValue(x); + }, + resize: function(el, width, height, instance) { + return instance.resize(width, height); + } + }; + + if (defn.find) + result.find = defn.find; + if (defn.renderError) + result.renderError = defn.renderError; + if (defn.clearError) + result.clearError = defn.clearError; + + return result; + } +})(); + diff --git a/docs/articles/theophylline_files/mermaid-0.3.0/LICENSE b/docs/articles/theophylline_files/mermaid-0.3.0/LICENSE new file mode 100644 index 0000000..faae921 --- /dev/null +++ b/docs/articles/theophylline_files/mermaid-0.3.0/LICENSE @@ -0,0 +1,22 @@ +The MIT License (MIT) + +Copyright (c) 2014 Knut Sveidqvist + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. + diff --git a/docs/articles/theophylline_files/mermaid-0.3.0/dist/mermaid.css b/docs/articles/theophylline_files/mermaid-0.3.0/dist/mermaid.css new file mode 100644 index 0000000..d169f84 --- /dev/null +++ b/docs/articles/theophylline_files/mermaid-0.3.0/dist/mermaid.css @@ -0,0 +1,275 @@ +/* Flowchart variables */ +/* Sequence Diagram variables */ +/* Gantt chart variables */ +.mermaid .label { + color: #333333; + font-weight: 400; +} + +.mermaid .node rect, +.node circle, +.mermaid .node ellipse, +.mermaid .node polygon { + fill: #ECECFF; + stroke: #CCCCFF; + stroke-width: 1px; +} +.mermaid .edgePath .path { + stroke: #333333; +} + +.mermaid g .edgeLabel { + background-color: white; +} + +.mermaid .cluster rect { + fill: #ffffde !important; + rx: 4 !important; + stroke: #aaaa33 !important; + stroke-width: 1px !important; +} +.mermaid .cluster text { + fill: #333333; +} +.mermaid .actor { + stroke: #CCCCFF; + fill: #ECECFF; +} +.mermaid text.actor { + fill: black; + stroke: none; +} +.mermaid .actor-line { + stroke: grey; +} +.mermaid .messageLine0 { + stroke-width: 1.5; + stroke-dasharray: "2 2"; + stroke: #333333; +} +.mermaid .messageLine1 { + stroke-width: 1.5; + stroke-dasharray: "2 2"; + stroke: #333333; +} +.mermaid #arrowhead { + fill: #333333; +} +.mermaid #crosshead path { + fill: #333333 !important; + stroke: #333333 !important; +} +.mermaid .messageText { + fill: #333333; + stroke: none; +} +.mermaid .labelBox { + stroke: #CCCCFF; + fill: #ECECFF; +} +.mermaid .labelText { + fill: black; + stroke: none; +} +.mermaid .loopText { + fill: black; + stroke: none; +} +.mermaid .loopLine { + stroke-width: 2; + stroke-dasharray: "2 2"; + stroke: #CCCCFF; +} +.mermaid .note { + stroke: #aaaa33; + fill: #fff5ad; +} +.mermaid .noteText { + fill: black; + stroke: none; + font-family: 'trebuchet ms', verdana, arial; + font-size: 14px; +} +/** Section styling */ +.mermaid .section { + stroke: none; + opacity: 0.2; +} +.mermaid .section0 { + fill: rgba(102, 102, 255, 0.49); +} +.mermaid .section2 { + fill: #fff400; +} +.mermaid .section1, +.mermaid .section3 { + fill: white; + opacity: 0.2; +} +.mermaid .sectionTitle0 { + fill: #333333; +} +.mermaid .sectionTitle1 { + fill: #333333; +} +.mermaid .sectionTitle2 { + fill: #333333; +} +.mermaid .sectionTitle3 { + fill: #333333; +} +.mermaid .sectionTitle { + text-anchor: start; + font-size: 11px; + text-height: 14px; +} +/* Grid and axis */ +.mermaid .grid .tick { + stroke: lightgrey; + opacity: 0.3; + shape-rendering: crispEdges; +} +.mermaid .grid path { + stroke-width: 0; +} +/* Today line */ +.mermaid .today { + fill: none; + stroke: red; + stroke-width: 2px; +} +/* Task styling */ +/* Default task */ +.mermaid .task { + stroke-width: 2; +} +.mermaid .taskText { + text-anchor: middle; + font-size: 11px; +} +.mermaid .taskTextOutsideRight { + fill: black; + text-anchor: start; + font-size: 11px; +} +.mermaid .taskTextOutsideLeft { + fill: black; + text-anchor: end; + font-size: 11px; +} +/* Specific task settings for the sections*/ +.mermaid .taskText0, +.mermaid .taskText1, +.mermaid .taskText2, +.mermaid .taskText3 { + fill: white; +} +.mermaid .task0, +.mermaid .task1, +.mermaid .task2, +.mermaid .task3 { + fill: #8a90dd; + stroke: #534fbc; +} +.mermaid .taskTextOutside0, +.mermaid .taskTextOutside2 { + fill: black; +} +.mermaid .taskTextOutside1, +.mermaid .taskTextOutside3 { + fill: black; +} +/* Active task */ +.mermaid .active0, +.mermaid .active1, +.mermaid .active2, +.mermaid .active3 { + fill: #bfc7ff; + stroke: #534fbc; +} +.mermaid .activeText0, +.mermaid .activeText1, +.mermaid .activeText2, +.mermaid .activeText3 { + fill: black !important; +} +/* Completed task */ +.mermaid .done0, 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╔",boxh:"─",boxH:"═",boxhd:"┬",boxHd:"╤",boxhD:"╥",boxHD:"╦",boxhu:"┴",boxHu:"╧",boxhU:"╨",boxHU:"╩",boxminus:"⊟",boxplus:"⊞",boxtimes:"⊠",boxul:"┘",boxuL:"╛",boxUl:"╜",boxUL:"╝",boxur:"└",boxuR:"╘",boxUr:"╙",boxUR:"╚",boxv:"│",boxV:"║",boxvh:"┼",boxvH:"╪",boxVh:"╫",boxVH:"╬",boxvl:"┤",boxvL:"╡",boxVl:"╢",boxVL:"╣",boxvr:"├",boxvR:"╞",boxVr:"╟",boxVR:"╠",bprime:"‵",breve:"˘",Breve:"˘",brvbar:"¦",bscr:"𝒷",Bscr:"ℬ",bsemi:"⁏",bsim:"∽",bsime:"⋍",bsolb:"⧅",bsol:"\\",bsolhsub:"⟈",bull:"•",bullet:"•",bump:"≎",bumpE:"⪮",bumpe:"≏",Bumpeq:"≎",bumpeq:"≏",Cacute:"Ć",cacute:"ć",capand:"⩄",capbrcup:"⩉",capcap:"⩋",cap:"∩",Cap:"⋒",capcup:"⩇",capdot:"⩀",CapitalDifferentialD:"ⅅ",caps:"∩︀",caret:"⁁",caron:"ˇ",Cayleys:"ℭ",ccaps:"⩍",Ccaron:"Č",ccaron:"č",Ccedil:"Ç",ccedil:"ç",Ccirc:"Ĉ",ccirc:"ĉ",Cconint:"∰",ccups:"⩌",ccupssm:"⩐",Cdot:"Ċ",cdot:"ċ",cedil:"¸",Cedilla:"¸",cemptyv:"⦲",cent:"¢",centerdot:"·",CenterDot:"·",cfr:"𝔠",Cfr:"ℭ",CHcy:"Ч",chcy:"ч",check:"✓",checkmark:"✓",Chi:"Χ",chi:"χ",circ:"ˆ",circeq:"≗",circlearrowleft:"↺",circlearrowright:"↻",circledast:"⊛",circledcirc:"⊚",circleddash:"⊝",CircleDot:"⊙",circledR:"®",circledS:"Ⓢ",CircleMinus:"⊖",CirclePlus:"⊕",CircleTimes:"⊗",cir:"○",cirE:"⧃",cire:"≗",cirfnint:"⨐",cirmid:"⫯",cirscir:"⧂",ClockwiseContourIntegral:"∲",CloseCurlyDoubleQuote:"”",CloseCurlyQuote:"’",clubs:"♣",clubsuit:"♣",colon:":",Colon:"∷",Colone:"⩴",colone:"≔",coloneq:"≔",comma:",",commat:"@",comp:"∁",compfn:"∘",complement:"∁",complexes:"ℂ",cong:"≅",congdot:"⩭",Congruent:"≡",conint:"∮",Conint:"∯",ContourIntegral:"∮",copf:"𝕔",Copf:"ℂ",coprod:"∐",Coproduct:"∐",copy:"©",COPY:"©",copysr:"℗",CounterClockwiseContourIntegral:"∳",crarr:"↵",cross:"✗",Cross:"⨯",Cscr:"𝒞",cscr:"𝒸",csub:"⫏",csube:"⫑",csup:"⫐",csupe:"⫒",ctdot:"⋯",cudarrl:"⤸",cudarrr:"⤵",cuepr:"⋞",cuesc:"⋟",cularr:"↶",cularrp:"⤽",cupbrcap:"⩈",cupcap:"⩆",CupCap:"≍",cup:"∪",Cup:"⋓",cupcup:"⩊",cupdot:"⊍",cupor:"⩅",cups:"∪︀",curarr:"↷",curarrm:"⤼",curlyeqprec:"⋞",curlyeqsucc:"⋟",curlyvee:"⋎",curlywedge:"⋏",curren:"¤",curvearrowleft:"↶",curvearrowright:"↷",cuvee:"⋎",cuwed:"⋏",cwconint:"∲",cwint:"∱",cylcty:"⌭",dagger:"†",Dagger:"‡",daleth:"ℸ",darr:"↓",Darr:"↡",dArr:"⇓",dash:"‐",Dashv:"⫤",dashv:"⊣",dbkarow:"⤏",dblac:"˝",Dcaron:"Ď",dcaron:"ď",Dcy:"Д",dcy:"д",ddagger:"‡",ddarr:"⇊",DD:"ⅅ",dd:"ⅆ",DDotrahd:"⤑",ddotseq:"⩷",deg:"°",Del:"∇",Delta:"Δ",delta:"δ",demptyv:"⦱",dfisht:"⥿",Dfr:"𝔇",dfr:"𝔡",dHar:"⥥",dharl:"⇃",dharr:"⇂",DiacriticalAcute:"´",DiacriticalDot:"˙",DiacriticalDoubleAcute:"˝",DiacriticalGrave:"`",DiacriticalTilde:"˜",diam:"⋄",diamond:"⋄",Diamond:"⋄",diamondsuit:"♦",diams:"♦",die:"¨",DifferentialD:"ⅆ",digamma:"ϝ",disin:"⋲",div:"÷",divide:"÷",divideontimes:"⋇",divonx:"⋇",DJcy:"Ђ",djcy:"ђ",dlcorn:"⌞",dlcrop:"⌍",dollar:"$",Dopf:"𝔻",dopf:"𝕕",Dot:"¨",dot:"˙",DotDot:"⃜",doteq:"≐",doteqdot:"≑",DotEqual:"≐",dotminus:"∸",dotplus:"∔",dotsquare:"⊡",doublebarwedge:"⌆",DoubleContourIntegral:"∯",DoubleDot:"¨",DoubleDownArrow:"⇓",DoubleLeftArrow:"⇐",DoubleLeftRightArrow:"⇔",DoubleLeftTee:"⫤",DoubleLongLeftArrow:"⟸",DoubleLongLeftRightArrow:"⟺",DoubleLongRightArrow:"⟹",DoubleRightArrow:"⇒",DoubleRightTee:"⊨",DoubleUpArrow:"⇑",DoubleUpDownArrow:"⇕",DoubleVerticalBar:"∥",DownArrowBar:"⤓",downarrow:"↓",DownArrow:"↓",Downarrow:"⇓",DownArrowUpArrow:"⇵",DownBreve:"̑",downdownarrows:"⇊",downharpoonleft:"⇃",downharpoonright:"⇂",DownLeftRightVector:"⥐",DownLeftTeeVector:"⥞",DownLeftVectorBar:"⥖",DownLeftVector:"↽",DownRightTeeVector:"⥟",DownRightVectorBar:"⥗",DownRightVector:"⇁",DownTeeArrow:"↧",DownTee:"⊤",drbkarow:"⤐",drcorn:"⌟",drcrop:"⌌",Dscr:"𝒟",dscr:"𝒹",DScy:"Ѕ",dscy:"ѕ",dsol:"⧶",Dstrok:"Đ",dstrok:"đ",dtdot:"⋱",dtri:"▿",dtrif:"▾",duarr:"⇵",duhar:"⥯",dwangle:"⦦",DZcy:"Џ",dzcy:"џ",dzigrarr:"⟿",Eacute:"É",eacute:"é",easter:"⩮",Ecaron:"Ě",ecaron:"ě",Ecirc:"Ê",ecirc:"ê",ecir:"≖",ecolon:"≕",Ecy:"Э",ecy:"э",eDDot:"⩷",Edot:"Ė",edot:"ė",eDot:"≑",ee:"ⅇ",efDot:"≒",Efr:"𝔈",efr:"𝔢",eg:"⪚",Egrave:"È",egrave:"è",egs:"⪖",egsdot:"⪘",el:"⪙",Element:"∈",elinters:"⏧",ell:"ℓ",els:"⪕",elsdot:"⪗",Emacr:"Ē",emacr:"ē",empty:"∅",emptyset:"∅",EmptySmallSquare:"◻",emptyv:"∅",EmptyVerySmallSquare:"▫",emsp13:" ",emsp14:" ",emsp:" ",ENG:"Ŋ",eng:"ŋ",ensp:" ",Eogon:"Ę",eogon:"ę",Eopf:"𝔼",eopf:"𝕖",epar:"⋕",eparsl:"⧣",eplus:"⩱",epsi:"ε",Epsilon:"Ε",epsilon:"ε",epsiv:"ϵ",eqcirc:"≖",eqcolon:"≕",eqsim:"≂",eqslantgtr:"⪖",eqslantless:"⪕",Equal:"⩵",equals:"=",EqualTilde:"≂",equest:"≟",Equilibrium:"⇌",equiv:"≡",equivDD:"⩸",eqvparsl:"⧥",erarr:"⥱",erDot:"≓",escr:"ℯ",Escr:"ℰ",esdot:"≐",Esim:"⩳",esim:"≂",Eta:"Η",eta:"η",ETH:"Ð",eth:"ð",Euml:"Ë",euml:"ë",euro:"€",excl:"!",exist:"∃",Exists:"∃",expectation:"ℰ",exponentiale:"ⅇ",ExponentialE:"ⅇ",fallingdotseq:"≒",Fcy:"Ф",fcy:"ф",female:"♀",ffilig:"ffi",fflig:"ff",ffllig:"ffl",Ffr:"𝔉",ffr:"𝔣",filig:"fi",FilledSmallSquare:"◼",FilledVerySmallSquare:"▪",fjlig:"fj",flat:"♭",fllig:"fl",fltns:"▱",fnof:"ƒ",Fopf:"𝔽",fopf:"𝕗",forall:"∀",ForAll:"∀",fork:"⋔",forkv:"⫙",Fouriertrf:"ℱ",fpartint:"⨍",frac12:"½",frac13:"⅓",frac14:"¼",frac15:"⅕",frac16:"⅙",frac18:"⅛",frac23:"⅔",frac25:"⅖",frac34:"¾",frac35:"⅗",frac38:"⅜",frac45:"⅘",frac56:"⅚",frac58:"⅝",frac78:"⅞",frasl:"⁄",frown:"⌢",fscr:"𝒻",Fscr:"ℱ",gacute:"ǵ",Gamma:"Γ",gamma:"γ",Gammad:"Ϝ",gammad:"ϝ",gap:"⪆",Gbreve:"Ğ",gbreve:"ğ",Gcedil:"Ģ",Gcirc:"Ĝ",gcirc:"ĝ",Gcy:"Г",gcy:"г",Gdot:"Ġ",gdot:"ġ",ge:"≥",gE:"≧",gEl:"⪌",gel:"⋛",geq:"≥",geqq:"≧",geqslant:"⩾",gescc:"⪩",ges:"⩾",gesdot:"⪀",gesdoto:"⪂",gesdotol:"⪄",gesl:"⋛︀",gesles:"⪔",Gfr:"𝔊",gfr:"𝔤",gg:"≫",Gg:"⋙",ggg:"⋙",gimel:"ℷ",GJcy:"Ѓ",gjcy:"ѓ",gla:"⪥",gl:"≷",glE:"⪒",glj:"⪤",gnap:"⪊",gnapprox:"⪊",gne:"⪈",gnE:"≩",gneq:"⪈",gneqq:"≩",gnsim:"⋧",Gopf:"𝔾",gopf:"𝕘",grave:"`",GreaterEqual:"≥",GreaterEqualLess:"⋛",GreaterFullEqual:"≧",GreaterGreater:"⪢",GreaterLess:"≷",GreaterSlantEqual:"⩾",GreaterTilde:"≳",Gscr:"𝒢",gscr:"ℊ",gsim:"≳",gsime:"⪎",gsiml:"⪐",gtcc:"⪧",gtcir:"⩺",gt:">",GT:">",Gt:"≫",gtdot:"⋗",gtlPar:"⦕",gtquest:"⩼",gtrapprox:"⪆",gtrarr:"⥸",gtrdot:"⋗",gtreqless:"⋛",gtreqqless:"⪌",gtrless:"≷",gtrsim:"≳",gvertneqq:"≩︀",gvnE:"≩︀",Hacek:"ˇ",hairsp:" ",half:"½",hamilt:"ℋ",HARDcy:"Ъ",hardcy:"ъ",harrcir:"⥈",harr:"↔",hArr:"⇔",harrw:"↭",Hat:"^",hbar:"ℏ",Hcirc:"Ĥ",hcirc:"ĥ",hearts:"♥",heartsuit:"♥",hellip:"…",hercon:"⊹",hfr:"𝔥",Hfr:"ℌ",HilbertSpace:"ℋ",hksearow:"⤥",hkswarow:"⤦",hoarr:"⇿",homtht:"∻",hookleftarrow:"↩",hookrightarrow:"↪",hopf:"𝕙",Hopf:"ℍ",horbar:"―",HorizontalLine:"─",hscr:"𝒽",Hscr:"ℋ",hslash:"ℏ",Hstrok:"Ħ",hstrok:"ħ",HumpDownHump:"≎",HumpEqual:"≏",hybull:"⁃",hyphen:"‐",Iacute:"Í",iacute:"í",ic:"⁣",Icirc:"Î",icirc:"î",Icy:"И",icy:"и",Idot:"İ",IEcy:"Е",iecy:"е",iexcl:"¡",iff:"⇔",ifr:"𝔦",Ifr:"ℑ",Igrave:"Ì",igrave:"ì",ii:"ⅈ",iiiint:"⨌",iiint:"∭",iinfin:"⧜",iiota:"℩",IJlig:"IJ",ijlig:"ij",Imacr:"Ī",imacr:"ī",image:"ℑ",ImaginaryI:"ⅈ",imagline:"ℐ",imagpart:"ℑ",imath:"ı",Im:"ℑ",imof:"⊷",imped:"Ƶ",Implies:"⇒",incare:"℅","in":"∈",infin:"∞",infintie:"⧝",inodot:"ı",intcal:"⊺","int":"∫",Int:"∬",integers:"ℤ",Integral:"∫",intercal:"⊺",Intersection:"⋂",intlarhk:"⨗",intprod:"⨼",InvisibleComma:"⁣",InvisibleTimes:"⁢",IOcy:"Ё",iocy:"ё",Iogon:"Į",iogon:"į",Iopf:"𝕀",iopf:"𝕚",Iota:"Ι",iota:"ι",iprod:"⨼",iquest:"¿",iscr:"𝒾",Iscr:"ℐ",isin:"∈",isindot:"⋵",isinE:"⋹",isins:"⋴",isinsv:"⋳",isinv:"∈",it:"⁢",Itilde:"Ĩ",itilde:"ĩ",Iukcy:"І",iukcy:"і",Iuml:"Ï",iuml:"ï",Jcirc:"Ĵ",jcirc:"ĵ",Jcy:"Й",jcy:"й",Jfr:"𝔍",jfr:"𝔧",jmath:"ȷ",Jopf:"𝕁",jopf:"𝕛",Jscr:"𝒥",jscr:"𝒿",Jsercy:"Ј",jsercy:"ј",Jukcy:"Є",jukcy:"є",Kappa:"Κ",kappa:"κ",kappav:"ϰ",Kcedil:"Ķ",kcedil:"ķ",Kcy:"К",kcy:"к",Kfr:"𝔎",kfr:"𝔨",kgreen:"ĸ",KHcy:"Х",khcy:"х",KJcy:"Ќ",kjcy:"ќ",Kopf:"𝕂",kopf:"𝕜",Kscr:"𝒦",kscr:"𝓀",lAarr:"⇚",Lacute:"Ĺ",lacute:"ĺ",laemptyv:"⦴",lagran:"ℒ",Lambda:"Λ",lambda:"λ",lang:"⟨",Lang:"⟪",langd:"⦑",langle:"⟨",lap:"⪅",Laplacetrf:"ℒ",laquo:"«",larrb:"⇤",larrbfs:"⤟",larr:"←",Larr:"↞",lArr:"⇐",larrfs:"⤝",larrhk:"↩",larrlp:"↫",larrpl:"⤹",larrsim:"⥳",larrtl:"↢",latail:"⤙",lAtail:"⤛",lat:"⪫",late:"⪭",lates:"⪭︀",lbarr:"⤌",lBarr:"⤎",lbbrk:"❲",lbrace:"{",lbrack:"[",lbrke:"⦋",lbrksld:"⦏",lbrkslu:"⦍",Lcaron:"Ľ",lcaron:"ľ",Lcedil:"Ļ",lcedil:"ļ",lceil:"⌈",lcub:"{",Lcy:"Л",lcy:"л",ldca:"⤶",ldquo:"“",ldquor:"„",ldrdhar:"⥧",ldrushar:"⥋",ldsh:"↲",le:"≤",lE:"≦",LeftAngleBracket:"⟨",LeftArrowBar:"⇤",leftarrow:"←",LeftArrow:"←",Leftarrow:"⇐",LeftArrowRightArrow:"⇆",leftarrowtail:"↢",LeftCeiling:"⌈",LeftDoubleBracket:"⟦",LeftDownTeeVector:"⥡",LeftDownVectorBar:"⥙",LeftDownVector:"⇃",LeftFloor:"⌊",leftharpoondown:"↽",leftharpoonup:"↼",leftleftarrows:"⇇",leftrightarrow:"↔",LeftRightArrow:"↔",Leftrightarrow:"⇔",leftrightarrows:"⇆",leftrightharpoons:"⇋",leftrightsquigarrow:"↭",LeftRightVector:"⥎",LeftTeeArrow:"↤",LeftTee:"⊣",LeftTeeVector:"⥚",leftthreetimes:"⋋",LeftTriangleBar:"⧏",LeftTriangle:"⊲",LeftTriangleEqual:"⊴",LeftUpDownVector:"⥑",LeftUpTeeVector:"⥠",LeftUpVectorBar:"⥘",LeftUpVector:"↿",LeftVectorBar:"⥒",LeftVector:"↼",lEg:"⪋",leg:"⋚",leq:"≤",leqq:"≦",leqslant:"⩽",lescc:"⪨",les:"⩽",lesdot:"⩿",lesdoto:"⪁",lesdotor:"⪃",lesg:"⋚︀",lesges:"⪓",lessapprox:"⪅",lessdot:"⋖",lesseqgtr:"⋚",lesseqqgtr:"⪋",LessEqualGreater:"⋚",LessFullEqual:"≦",LessGreater:"≶",lessgtr:"≶",LessLess:"⪡",lesssim:"≲",LessSlantEqual:"⩽",LessTilde:"≲",lfisht:"⥼",lfloor:"⌊",Lfr:"𝔏",lfr:"𝔩",lg:"≶",lgE:"⪑",lHar:"⥢",lhard:"↽",lharu:"↼",lharul:"⥪",lhblk:"▄",LJcy:"Љ",ljcy:"љ",llarr:"⇇",ll:"≪",Ll:"⋘",llcorner:"⌞",Lleftarrow:"⇚",llhard:"⥫",lltri:"◺",Lmidot:"Ŀ",lmidot:"ŀ",lmoustache:"⎰",lmoust:"⎰",lnap:"⪉",lnapprox:"⪉",lne:"⪇",lnE:"≨",lneq:"⪇",lneqq:"≨",lnsim:"⋦",loang:"⟬",loarr:"⇽",lobrk:"⟦",longleftarrow:"⟵",LongLeftArrow:"⟵",Longleftarrow:"⟸",longleftrightarrow:"⟷",LongLeftRightArrow:"⟷",Longleftrightarrow:"⟺",longmapsto:"⟼",longrightarrow:"⟶",LongRightArrow:"⟶",Longrightarrow:"⟹",looparrowleft:"↫",looparrowright:"↬",lopar:"⦅",Lopf:"𝕃",lopf:"𝕝",loplus:"⨭",lotimes:"⨴",lowast:"∗",lowbar:"_",LowerLeftArrow:"↙",LowerRightArrow:"↘",loz:"◊",lozenge:"◊",lozf:"⧫",lpar:"(",lparlt:"⦓",lrarr:"⇆",lrcorner:"⌟",lrhar:"⇋",lrhard:"⥭",lrm:"‎",lrtri:"⊿",lsaquo:"‹",lscr:"𝓁",Lscr:"ℒ",lsh:"↰",Lsh:"↰",lsim:"≲",lsime:"⪍",lsimg:"⪏",lsqb:"[",lsquo:"‘",lsquor:"‚",Lstrok:"Ł",lstrok:"ł",ltcc:"⪦",ltcir:"⩹",lt:"<",LT:"<",Lt:"≪",ltdot:"⋖",lthree:"⋋",ltimes:"⋉",ltlarr:"⥶",ltquest:"⩻",ltri:"◃",ltrie:"⊴",ltrif:"◂",ltrPar:"⦖",lurdshar:"⥊",luruhar:"⥦",lvertneqq:"≨︀",lvnE:"≨︀",macr:"¯",male:"♂",malt:"✠",maltese:"✠",Map:"⤅",map:"↦",mapsto:"↦",mapstodown:"↧",mapstoleft:"↤",mapstoup:"↥",marker:"▮",mcomma:"⨩",Mcy:"М",mcy:"м",mdash:"—",mDDot:"∺",measuredangle:"∡",MediumSpace:" ",Mellintrf:"ℳ",Mfr:"𝔐",mfr:"𝔪",mho:"℧",micro:"µ",midast:"*",midcir:"⫰",mid:"∣",middot:"·",minusb:"⊟",minus:"−",minusd:"∸",minusdu:"⨪",MinusPlus:"∓",mlcp:"⫛",mldr:"…",mnplus:"∓",models:"⊧",Mopf:"𝕄",mopf:"𝕞",mp:"∓",mscr:"𝓂",Mscr:"ℳ",mstpos:"∾",Mu:"Μ",mu:"μ",multimap:"⊸",mumap:"⊸",nabla:"∇",Nacute:"Ń",nacute:"ń",nang:"∠⃒",nap:"≉",napE:"⩰̸",napid:"≋̸",napos:"ʼn",napprox:"≉",natural:"♮",naturals:"ℕ",natur:"♮",nbsp:" ",nbump:"≎̸",nbumpe:"≏̸",ncap:"⩃",Ncaron:"Ň",ncaron:"ň",Ncedil:"Ņ",ncedil:"ņ",ncong:"≇",ncongdot:"⩭̸",ncup:"⩂",Ncy:"Н",ncy:"н",ndash:"–",nearhk:"⤤",nearr:"↗",neArr:"⇗",nearrow:"↗",ne:"≠",nedot:"≐̸",NegativeMediumSpace:"​",NegativeThickSpace:"​",NegativeThinSpace:"​",NegativeVeryThinSpace:"​",nequiv:"≢",nesear:"⤨",nesim:"≂̸",NestedGreaterGreater:"≫",NestedLessLess:"≪",NewLine:"\n",nexist:"∄",nexists:"∄",Nfr:"𝔑",nfr:"𝔫",ngE:"≧̸",nge:"≱",ngeq:"≱",ngeqq:"≧̸",ngeqslant:"⩾̸",nges:"⩾̸",nGg:"⋙̸",ngsim:"≵",nGt:"≫⃒",ngt:"≯",ngtr:"≯",nGtv:"≫̸",nharr:"↮",nhArr:"⇎",nhpar:"⫲",ni:"∋",nis:"⋼",nisd:"⋺",niv:"∋",NJcy:"Њ",njcy:"њ",nlarr:"↚",nlArr:"⇍",nldr:"‥",nlE:"≦̸",nle:"≰",nleftarrow:"↚",nLeftarrow:"⇍",nleftrightarrow:"↮",nLeftrightarrow:"⇎",nleq:"≰",nleqq:"≦̸",nleqslant:"⩽̸",nles:"⩽̸",nless:"≮",nLl:"⋘̸",nlsim:"≴",nLt:"≪⃒",nlt:"≮",nltri:"⋪",nltrie:"⋬",nLtv:"≪̸",nmid:"∤",NoBreak:"⁠",NonBreakingSpace:" ",nopf:"𝕟",Nopf:"ℕ",Not:"⫬",not:"¬",NotCongruent:"≢",NotCupCap:"≭",NotDoubleVerticalBar:"∦",NotElement:"∉",NotEqual:"≠",NotEqualTilde:"≂̸",NotExists:"∄",NotGreater:"≯",NotGreaterEqual:"≱",NotGreaterFullEqual:"≧̸",NotGreaterGreater:"≫̸",NotGreaterLess:"≹",NotGreaterSlantEqual:"⩾̸",NotGreaterTilde:"≵",NotHumpDownHump:"≎̸",NotHumpEqual:"≏̸",notin:"∉",notindot:"⋵̸",notinE:"⋹̸",notinva:"∉",notinvb:"⋷",notinvc:"⋶",NotLeftTriangleBar:"⧏̸",NotLeftTriangle:"⋪",NotLeftTriangleEqual:"⋬",NotLess:"≮",NotLessEqual:"≰",NotLessGreater:"≸",NotLessLess:"≪̸",NotLessSlantEqual:"⩽̸",NotLessTilde:"≴",NotNestedGreaterGreater:"⪢̸",NotNestedLessLess:"⪡̸",notni:"∌",notniva:"∌",notnivb:"⋾",notnivc:"⋽",NotPrecedes:"⊀",NotPrecedesEqual:"⪯̸",NotPrecedesSlantEqual:"⋠",NotReverseElement:"∌",NotRightTriangleBar:"⧐̸",NotRightTriangle:"⋫",NotRightTriangleEqual:"⋭",NotSquareSubset:"⊏̸",NotSquareSubsetEqual:"⋢",NotSquareSuperset:"⊐̸",NotSquareSupersetEqual:"⋣",NotSubset:"⊂⃒",NotSubsetEqual:"⊈",NotSucceeds:"⊁",NotSucceedsEqual:"⪰̸",NotSucceedsSlantEqual:"⋡",NotSucceedsTilde:"≿̸",NotSuperset:"⊃⃒",NotSupersetEqual:"⊉",NotTilde:"≁",NotTildeEqual:"≄",NotTildeFullEqual:"≇",NotTildeTilde:"≉",NotVerticalBar:"∤",nparallel:"∦",npar:"∦",nparsl:"⫽⃥",npart:"∂̸",npolint:"⨔",npr:"⊀",nprcue:"⋠",nprec:"⊀",npreceq:"⪯̸",npre:"⪯̸",nrarrc:"⤳̸",nrarr:"↛",nrArr:"⇏",nrarrw:"↝̸",nrightarrow:"↛",nRightarrow:"⇏",nrtri:"⋫",nrtrie:"⋭",nsc:"⊁",nsccue:"⋡",nsce:"⪰̸",Nscr:"𝒩",nscr:"𝓃",nshortmid:"∤",nshortparallel:"∦",nsim:"≁",nsime:"≄",nsimeq:"≄",nsmid:"∤",nspar:"∦",nsqsube:"⋢",nsqsupe:"⋣",nsub:"⊄",nsubE:"⫅̸",nsube:"⊈",nsubset:"⊂⃒",nsubseteq:"⊈",nsubseteqq:"⫅̸",nsucc:"⊁",nsucceq:"⪰̸",nsup:"⊅",nsupE:"⫆̸",nsupe:"⊉",nsupset:"⊃⃒",nsupseteq:"⊉",nsupseteqq:"⫆̸",ntgl:"≹",Ntilde:"Ñ",ntilde:"ñ",ntlg:"≸",ntriangleleft:"⋪",ntrianglelefteq:"⋬",ntriangleright:"⋫",ntrianglerighteq:"⋭",Nu:"Ν",nu:"ν",num:"#",numero:"№",numsp:" ",nvap:"≍⃒",nvdash:"⊬",nvDash:"⊭",nVdash:"⊮",nVDash:"⊯",nvge:"≥⃒",nvgt:">⃒",nvHarr:"⤄",nvinfin:"⧞",nvlArr:"⤂",nvle:"≤⃒",nvlt:"<⃒",nvltrie:"⊴⃒",nvrArr:"⤃",nvrtrie:"⊵⃒",nvsim:"∼⃒",nwarhk:"⤣",nwarr:"↖",nwArr:"⇖",nwarrow:"↖",nwnear:"⤧",Oacute:"Ó",oacute:"ó",oast:"⊛",Ocirc:"Ô",ocirc:"ô",ocir:"⊚",Ocy:"О",ocy:"о",odash:"⊝",Odblac:"Ő",odblac:"ő",odiv:"⨸",odot:"⊙",odsold:"⦼",OElig:"Œ",oelig:"œ",ofcir:"⦿",Ofr:"𝔒",ofr:"𝔬",ogon:"˛",Ograve:"Ò",ograve:"ò",ogt:"⧁",ohbar:"⦵",ohm:"Ω",oint:"∮",olarr:"↺",olcir:"⦾",olcross:"⦻",oline:"‾",olt:"⧀",Omacr:"Ō",omacr:"ō",Omega:"Ω",omega:"ω",Omicron:"Ο",omicron:"ο",omid:"⦶",ominus:"⊖",Oopf:"𝕆",oopf:"𝕠",opar:"⦷",OpenCurlyDoubleQuote:"“",OpenCurlyQuote:"‘",operp:"⦹",oplus:"⊕",orarr:"↻",Or:"⩔",or:"∨",ord:"⩝",order:"ℴ",orderof:"ℴ",ordf:"ª",ordm:"º",origof:"⊶",oror:"⩖",orslope:"⩗",orv:"⩛",oS:"Ⓢ",Oscr:"𝒪",oscr:"ℴ",Oslash:"Ø",oslash:"ø",osol:"⊘",Otilde:"Õ",otilde:"õ",otimesas:"⨶",Otimes:"⨷",otimes:"⊗",Ouml:"Ö",ouml:"ö",ovbar:"⌽",OverBar:"‾",OverBrace:"⏞",OverBracket:"⎴",OverParenthesis:"⏜",para:"¶",parallel:"∥",par:"∥",parsim:"⫳",parsl:"⫽",part:"∂",PartialD:"∂",Pcy:"П",pcy:"п",percnt:"%",period:".",permil:"‰",perp:"⊥",pertenk:"‱",Pfr:"𝔓",pfr:"𝔭",Phi:"Φ",phi:"φ",phiv:"ϕ",phmmat:"ℳ",phone:"☎",Pi:"Π",pi:"π",pitchfork:"⋔",piv:"ϖ",planck:"ℏ",planckh:"ℎ",plankv:"ℏ",plusacir:"⨣",plusb:"⊞",pluscir:"⨢",plus:"+",plusdo:"∔",plusdu:"⨥",pluse:"⩲",PlusMinus:"±",plusmn:"±",plussim:"⨦",plustwo:"⨧",pm:"±",Poincareplane:"ℌ",pointint:"⨕",popf:"𝕡",Popf:"ℙ",pound:"£",prap:"⪷",Pr:"⪻",pr:"≺",prcue:"≼",precapprox:"⪷",prec:"≺",preccurlyeq:"≼",Precedes:"≺",PrecedesEqual:"⪯",PrecedesSlantEqual:"≼",PrecedesTilde:"≾",preceq:"⪯",precnapprox:"⪹",precneqq:"⪵",precnsim:"⋨",pre:"⪯",prE:"⪳",precsim:"≾",prime:"′",Prime:"″",primes:"ℙ",prnap:"⪹",prnE:"⪵",prnsim:"⋨",prod:"∏",Product:"∏",profalar:"⌮",profline:"⌒",profsurf:"⌓",prop:"∝",Proportional:"∝",Proportion:"∷",propto:"∝",prsim:"≾",prurel:"⊰",Pscr:"𝒫",pscr:"𝓅",Psi:"Ψ",psi:"ψ",puncsp:" ",Qfr:"𝔔",qfr:"𝔮",qint:"⨌",qopf:"𝕢",Qopf:"ℚ",qprime:"⁗",Qscr:"𝒬",qscr:"𝓆",quaternions:"ℍ",quatint:"⨖",quest:"?",questeq:"≟",quot:'"',QUOT:'"',rAarr:"⇛",race:"∽̱",Racute:"Ŕ",racute:"ŕ",radic:"√",raemptyv:"⦳",rang:"⟩",Rang:"⟫",rangd:"⦒",range:"⦥",rangle:"⟩",raquo:"»",rarrap:"⥵",rarrb:"⇥",rarrbfs:"⤠",rarrc:"⤳",rarr:"→",Rarr:"↠",rArr:"⇒",rarrfs:"⤞",rarrhk:"↪",rarrlp:"↬",rarrpl:"⥅",rarrsim:"⥴",Rarrtl:"⤖",rarrtl:"↣",rarrw:"↝",ratail:"⤚",rAtail:"⤜",ratio:"∶",rationals:"ℚ",rbarr:"⤍",rBarr:"⤏",RBarr:"⤐",rbbrk:"❳",rbrace:"}",rbrack:"]",rbrke:"⦌",rbrksld:"⦎",rbrkslu:"⦐",Rcaron:"Ř",rcaron:"ř",Rcedil:"Ŗ",rcedil:"ŗ", +rceil:"⌉",rcub:"}",Rcy:"Р",rcy:"р",rdca:"⤷",rdldhar:"⥩",rdquo:"”",rdquor:"”",rdsh:"↳",real:"ℜ",realine:"ℛ",realpart:"ℜ",reals:"ℝ",Re:"ℜ",rect:"▭",reg:"®",REG:"®",ReverseElement:"∋",ReverseEquilibrium:"⇋",ReverseUpEquilibrium:"⥯",rfisht:"⥽",rfloor:"⌋",rfr:"𝔯",Rfr:"ℜ",rHar:"⥤",rhard:"⇁",rharu:"⇀",rharul:"⥬",Rho:"Ρ",rho:"ρ",rhov:"ϱ",RightAngleBracket:"⟩",RightArrowBar:"⇥",rightarrow:"→",RightArrow:"→",Rightarrow:"⇒",RightArrowLeftArrow:"⇄",rightarrowtail:"↣",RightCeiling:"⌉",RightDoubleBracket:"⟧",RightDownTeeVector:"⥝",RightDownVectorBar:"⥕",RightDownVector:"⇂",RightFloor:"⌋",rightharpoondown:"⇁",rightharpoonup:"⇀",rightleftarrows:"⇄",rightleftharpoons:"⇌",rightrightarrows:"⇉",rightsquigarrow:"↝",RightTeeArrow:"↦",RightTee:"⊢",RightTeeVector:"⥛",rightthreetimes:"⋌",RightTriangleBar:"⧐",RightTriangle:"⊳",RightTriangleEqual:"⊵",RightUpDownVector:"⥏",RightUpTeeVector:"⥜",RightUpVectorBar:"⥔",RightUpVector:"↾",RightVectorBar:"⥓",RightVector:"⇀",ring:"˚",risingdotseq:"≓",rlarr:"⇄",rlhar:"⇌",rlm:"‏",rmoustache:"⎱",rmoust:"⎱",rnmid:"⫮",roang:"⟭",roarr:"⇾",robrk:"⟧",ropar:"⦆",ropf:"𝕣",Ropf:"ℝ",roplus:"⨮",rotimes:"⨵",RoundImplies:"⥰",rpar:")",rpargt:"⦔",rppolint:"⨒",rrarr:"⇉",Rrightarrow:"⇛",rsaquo:"›",rscr:"𝓇",Rscr:"ℛ",rsh:"↱",Rsh:"↱",rsqb:"]",rsquo:"’",rsquor:"’",rthree:"⋌",rtimes:"⋊",rtri:"▹",rtrie:"⊵",rtrif:"▸",rtriltri:"⧎",RuleDelayed:"⧴",ruluhar:"⥨",rx:"℞",Sacute:"Ś",sacute:"ś",sbquo:"‚",scap:"⪸",Scaron:"Š",scaron:"š",Sc:"⪼",sc:"≻",sccue:"≽",sce:"⪰",scE:"⪴",Scedil:"Ş",scedil:"ş",Scirc:"Ŝ",scirc:"ŝ",scnap:"⪺",scnE:"⪶",scnsim:"⋩",scpolint:"⨓",scsim:"≿",Scy:"С",scy:"с",sdotb:"⊡",sdot:"⋅",sdote:"⩦",searhk:"⤥",searr:"↘",seArr:"⇘",searrow:"↘",sect:"§",semi:";",seswar:"⤩",setminus:"∖",setmn:"∖",sext:"✶",Sfr:"𝔖",sfr:"𝔰",sfrown:"⌢",sharp:"♯",SHCHcy:"Щ",shchcy:"щ",SHcy:"Ш",shcy:"ш",ShortDownArrow:"↓",ShortLeftArrow:"←",shortmid:"∣",shortparallel:"∥",ShortRightArrow:"→",ShortUpArrow:"↑",shy:"­",Sigma:"Σ",sigma:"σ",sigmaf:"ς",sigmav:"ς",sim:"∼",simdot:"⩪",sime:"≃",simeq:"≃",simg:"⪞",simgE:"⪠",siml:"⪝",simlE:"⪟",simne:"≆",simplus:"⨤",simrarr:"⥲",slarr:"←",SmallCircle:"∘",smallsetminus:"∖",smashp:"⨳",smeparsl:"⧤",smid:"∣",smile:"⌣",smt:"⪪",smte:"⪬",smtes:"⪬︀",SOFTcy:"Ь",softcy:"ь",solbar:"⌿",solb:"⧄",sol:"/",Sopf:"𝕊",sopf:"𝕤",spades:"♠",spadesuit:"♠",spar:"∥",sqcap:"⊓",sqcaps:"⊓︀",sqcup:"⊔",sqcups:"⊔︀",Sqrt:"√",sqsub:"⊏",sqsube:"⊑",sqsubset:"⊏",sqsubseteq:"⊑",sqsup:"⊐",sqsupe:"⊒",sqsupset:"⊐",sqsupseteq:"⊒",square:"□",Square:"□",SquareIntersection:"⊓",SquareSubset:"⊏",SquareSubsetEqual:"⊑",SquareSuperset:"⊐",SquareSupersetEqual:"⊒",SquareUnion:"⊔",squarf:"▪",squ:"□",squf:"▪",srarr:"→",Sscr:"𝒮",sscr:"𝓈",ssetmn:"∖",ssmile:"⌣",sstarf:"⋆",Star:"⋆",star:"☆",starf:"★",straightepsilon:"ϵ",straightphi:"ϕ",strns:"¯",sub:"⊂",Sub:"⋐",subdot:"⪽",subE:"⫅",sube:"⊆",subedot:"⫃",submult:"⫁",subnE:"⫋",subne:"⊊",subplus:"⪿",subrarr:"⥹",subset:"⊂",Subset:"⋐",subseteq:"⊆",subseteqq:"⫅",SubsetEqual:"⊆",subsetneq:"⊊",subsetneqq:"⫋",subsim:"⫇",subsub:"⫕",subsup:"⫓",succapprox:"⪸",succ:"≻",succcurlyeq:"≽",Succeeds:"≻",SucceedsEqual:"⪰",SucceedsSlantEqual:"≽",SucceedsTilde:"≿",succeq:"⪰",succnapprox:"⪺",succneqq:"⪶",succnsim:"⋩",succsim:"≿",SuchThat:"∋",sum:"∑",Sum:"∑",sung:"♪",sup1:"¹",sup2:"²",sup3:"³",sup:"⊃",Sup:"⋑",supdot:"⪾",supdsub:"⫘",supE:"⫆",supe:"⊇",supedot:"⫄",Superset:"⊃",SupersetEqual:"⊇",suphsol:"⟉",suphsub:"⫗",suplarr:"⥻",supmult:"⫂",supnE:"⫌",supne:"⊋",supplus:"⫀",supset:"⊃",Supset:"⋑",supseteq:"⊇",supseteqq:"⫆",supsetneq:"⊋",supsetneqq:"⫌",supsim:"⫈",supsub:"⫔",supsup:"⫖",swarhk:"⤦",swarr:"↙",swArr:"⇙",swarrow:"↙",swnwar:"⤪",szlig:"ß",Tab:" 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32:this.$=n.lineType.DOTTED_LINE}},table:[{3:1,4:2,5:[1,3]},{1:[3]},{1:[2,1]},{6:[1,4]},{7:5,9:6,10:10,11:14,12:7,14:8,15:9,16:r,20:n,21:i,45:a,46:s,47:o},{8:[1,18]},{6:[1,19],8:[2,3]},e(u,[2,7],{13:[1,20]}),e(u,[2,9]),e(u,[2,10]),e(u,[2,15],{22:21,24:24,25:25,13:[1,23],23:[1,22],26:c,27:l,28:h,29:d,30:f,31:p}),{10:32,11:14,45:a,46:s,47:o},e(u,[2,17]),e(u,[2,18]),e(g,[2,6],{11:14,10:33,45:a,46:s,47:o}),e(m,[2,46]),e(m,[2,47]),e(m,[2,48]),{1:[2,2]},{7:34,9:6,10:10,11:14,12:7,14:8,15:9,16:r,20:n,21:i,45:a,46:s,47:o},e(u,[2,8]),{10:35,11:14,23:[1,36],45:a,46:s,47:o},{22:37,24:24,25:25,26:c,27:l,28:h,29:d,30:f,31:p},e(u,[2,16]),{25:38,30:f,31:p},e(y,[2,26],{24:39,26:c,27:l,28:h,29:d}),e(v,[2,27]),e(v,[2,28]),e(v,[2,29]),e(v,[2,30]),e(b,[2,31]),e(b,[2,32]),e(u,[2,11],{17:[1,40]}),e(g,[2,5]),{8:[2,4]},e(_,[2,19]),{10:41,11:14,45:a,46:s,47:o},{10:42,11:14,23:[1,43],45:a,46:s,47:o},e(y,[2,25],{24:44,26:c,27:l,28:h,29:d}),e(y,[2,24]),{18:45,20:A},e(_,[2,21]),e(_,[2,20]),{10:47,11:14,45:a,46:s,47:o},e(y,[2,23]),{19:[1,48]},{18:49,19:[2,13],20:A},e(_,[2,22]),e(u,[2,12]),{19:[2,14]}],defaultActions:{2:[2,1],18:[2,2],34:[2,4],49:[2,14]},parseError:function(t,e){if(!e.recoverable){var r=function(t,e){this.message=t,this.hash=e};throw r.prototype=new Error,new r(t,e)}this.trace(t)},parse:function(t){var e=this,r=[0],n=[null],i=[],a=this.table,s="",o=0,u=0,c=0,l=2,h=1,d=i.slice.call(arguments,1),f=Object.create(this.lexer),p={yy:{}};for(var g in this.yy)Object.prototype.hasOwnProperty.call(this.yy,g)&&(p.yy[g]=this.yy[g]);f.setInput(t,p.yy),p.yy.lexer=f,p.yy.parser=this,"undefined"==typeof f.yylloc&&(f.yylloc={});var m=f.yylloc;i.push(m);var y=f.options&&f.options.ranges;"function"==typeof p.yy.parseError?this.parseError=p.yy.parseError:this.parseError=Object.getPrototypeOf(this).parseError;for(var v,b,_,A,w,x,E,k,D,C=function(){var t;return t=f.lex()||h,"number"!=typeof t&&(t=e.symbols_[t]||t),t},F={};;){if(_=r[r.length-1],this.defaultActions[_]?A=this.defaultActions[_]:((null===v||"undefined"==typeof v)&&(v=C()),A=a[_]&&a[_][v]),"undefined"==typeof A||!A.length||!A[0]){var T="";D=[];for(x in a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 2:if(E=this.productions_[A[1]][1],F.$=n[n.length-E],F._$={first_line:i[i.length-(E||1)].first_line,last_line:i[i.length-1].last_line,first_column:i[i.length-(E||1)].first_column,last_column:i[i.length-1].last_column},y&&(F._$.range=[i[i.length-(E||1)].range[0],i[i.length-1].range[1]]),w=this.performAction.apply(F,[s,u,o,p.yy,A[1],n,i].concat(d)),"undefined"!=typeof w)return w;E&&(r=r.slice(0,-1*E*2),n=n.slice(0,-1*E),i=i.slice(0,-1*E)),r.push(this.productions_[A[1]][0]),n.push(F.$),i.push(F._$),k=a[r[r.length-2]][r[r.length-1]],r.push(k);break;case 3:return!0}}return!0}},x=function(){var t={EOF:1,parseError:function(t,e){if(!this.yy.parser)throw new Error(t);this.yy.parser.parseError(t,e)},setInput:function(t,e){return this.yy=e||this.yy||{},this._input=t,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var t=this._input[0];this.yytext+=t,this.yyleng++,this.offset++,this.match+=t,this.matched+=t;var e=t.match(/(?:\r\n?|\n).*/g);return e?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),t},unput:function(t){var e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(t,e,r,n){switch(r){case 0:break;case 1:return 6;case 2:break;case 3:return 5;case 4:return this.begin("struct"),17;case 5:return this.popState(),19;case 6:break;case 7:return"MEMBER";case 8:return 16;case 9:this.begin("string");break;case 10:this.popState();break;case 11:return"STR";case 12:return 27;case 13:return 27;case 14:return 29;case 15:return 29;case 16:return 28;case 17:return 26;case 18:return 30;case 19:return 31;case 20:return 13;case 21:return 43;case 22:return"DOT";case 23:return"PLUS";case 24:return 40;case 25:return"EQUALS";case 26:return"EQUALS";case 27:return 47;case 28:return"PUNCTUATION";case 29:return 46;case 30:return 45;case 31:return 42;case 32:return 8}},rules:[/^(?:%%[^\n]*)/,/^(?:\n+)/,/^(?:\s+)/,/^(?:classDiagram\b)/,/^(?:[\{])/,/^(?:\})/,/^(?:[\n])/,/^(?:[^\{\}\n]*)/,/^(?:class\b)/,/^(?:["])/,/^(?:["])/,/^(?:[^"]*)/,/^(?:\s*<\|)/,/^(?:\s*\|>)/,/^(?:\s*>)/,/^(?:\s*<)/,/^(?:\s*\*)/,/^(?:\s*o\b)/,/^(?:--)/,/^(?:\.\.)/,/^(?::[^#\n;]+)/,/^(?:-)/,/^(?:\.)/,/^(?:\+)/,/^(?:%)/,/^(?:=)/,/^(?:=)/,/^(?:[A-Za-z]+)/,/^(?:[!"#$%&'*+,-.`?\\_\/])/,/^(?:[0-9]+)/,/^(?:[\u00AA\u00B5\u00BA\u00C0-\u00D6\u00D8-\u00F6]|[\u00F8-\u02C1\u02C6-\u02D1\u02E0-\u02E4\u02EC\u02EE\u0370-\u0374\u0376\u0377]|[\u037A-\u037D\u0386\u0388-\u038A\u038C\u038E-\u03A1\u03A3-\u03F5]|[\u03F7-\u0481\u048A-\u0527\u0531-\u0556\u0559\u0561-\u0587\u05D0-\u05EA]|[\u05F0-\u05F2\u0620-\u064A\u066E\u066F\u0671-\u06D3\u06D5\u06E5\u06E6\u06EE]|[\u06EF\u06FA-\u06FC\u06FF\u0710\u0712-\u072F\u074D-\u07A5\u07B1\u07CA-\u07EA]|[\u07F4\u07F5\u07FA\u0800-\u0815\u081A\u0824\u0828\u0840-\u0858\u08A0]|[\u08A2-\u08AC\u0904-\u0939\u093D\u0950\u0958-\u0961\u0971-\u0977]|[\u0979-\u097F\u0985-\u098C\u098F\u0990\u0993-\u09A8\u09AA-\u09B0\u09B2]|[\u09B6-\u09B9\u09BD\u09CE\u09DC\u09DD\u09DF-\u09E1\u09F0\u09F1\u0A05-\u0A0A]|[\u0A0F\u0A10\u0A13-\u0A28\u0A2A-\u0A30\u0A32\u0A33\u0A35\u0A36\u0A38\u0A39]|[\u0A59-\u0A5C\u0A5E\u0A72-\u0A74\u0A85-\u0A8D\u0A8F-\u0A91\u0A93-\u0AA8]|[\u0AAA-\u0AB0\u0AB2\u0AB3\u0AB5-\u0AB9\u0ABD\u0AD0\u0AE0\u0AE1\u0B05-\u0B0C]|[\u0B0F\u0B10\u0B13-\u0B28\u0B2A-\u0B30\u0B32\u0B33\u0B35-\u0B39\u0B3D\u0B5C]|[\u0B5D\u0B5F-\u0B61\u0B71\u0B83\u0B85-\u0B8A\u0B8E-\u0B90\u0B92-\u0B95\u0B99]|[\u0B9A\u0B9C\u0B9E\u0B9F\u0BA3\u0BA4\u0BA8-\u0BAA\u0BAE-\u0BB9\u0BD0]|[\u0C05-\u0C0C\u0C0E-\u0C10\u0C12-\u0C28\u0C2A-\u0C33\u0C35-\u0C39\u0C3D]|[\u0C58\u0C59\u0C60\u0C61\u0C85-\u0C8C\u0C8E-\u0C90\u0C92-\u0CA8\u0CAA-\u0CB3]|[\u0CB5-\u0CB9\u0CBD\u0CDE\u0CE0\u0CE1\u0CF1\u0CF2\u0D05-\u0D0C\u0D0E-\u0D10]|[\u0D12-\u0D3A\u0D3D\u0D4E\u0D60\u0D61\u0D7A-\u0D7F\u0D85-\u0D96\u0D9A-\u0DB1]|[\u0DB3-\u0DBB\u0DBD\u0DC0-\u0DC6\u0E01-\u0E30\u0E32\u0E33\u0E40-\u0E46\u0E81]|[\u0E82\u0E84\u0E87\u0E88\u0E8A\u0E8D\u0E94-\u0E97\u0E99-\u0E9F\u0EA1-\u0EA3]|[\u0EA5\u0EA7\u0EAA\u0EAB\u0EAD-\u0EB0\u0EB2\u0EB3\u0EBD\u0EC0-\u0EC4\u0EC6]|[\u0EDC-\u0EDF\u0F00\u0F40-\u0F47\u0F49-\u0F6C\u0F88-\u0F8C\u1000-\u102A]|[\u103F\u1050-\u1055\u105A-\u105D\u1061\u1065\u1066\u106E-\u1070\u1075-\u1081]|[\u108E\u10A0-\u10C5\u10C7\u10CD\u10D0-\u10FA\u10FC-\u1248\u124A-\u124D]|[\u1250-\u1256\u1258\u125A-\u125D\u1260-\u1288\u128A-\u128D\u1290-\u12B0]|[\u12B2-\u12B5\u12B8-\u12BE\u12C0\u12C2-\u12C5\u12C8-\u12D6\u12D8-\u1310]|[\u1312-\u1315\u1318-\u135A\u1380-\u138F\u13A0-\u13F4\u1401-\u166C]|[\u166F-\u167F\u1681-\u169A\u16A0-\u16EA\u1700-\u170C\u170E-\u1711]|[\u1720-\u1731\u1740-\u1751\u1760-\u176C\u176E-\u1770\u1780-\u17B3\u17D7]|[\u17DC\u1820-\u1877\u1880-\u18A8\u18AA\u18B0-\u18F5\u1900-\u191C]|[\u1950-\u196D\u1970-\u1974\u1980-\u19AB\u19C1-\u19C7\u1A00-\u1A16]|[\u1A20-\u1A54\u1AA7\u1B05-\u1B33\u1B45-\u1B4B\u1B83-\u1BA0\u1BAE\u1BAF]|[\u1BBA-\u1BE5\u1C00-\u1C23\u1C4D-\u1C4F\u1C5A-\u1C7D\u1CE9-\u1CEC]|[\u1CEE-\u1CF1\u1CF5\u1CF6\u1D00-\u1DBF\u1E00-\u1F15\u1F18-\u1F1D]|[\u1F20-\u1F45\u1F48-\u1F4D\u1F50-\u1F57\u1F59\u1F5B\u1F5D\u1F5F-\u1F7D]|[\u1F80-\u1FB4\u1FB6-\u1FBC\u1FBE\u1FC2-\u1FC4\u1FC6-\u1FCC\u1FD0-\u1FD3]|[\u1FD6-\u1FDB\u1FE0-\u1FEC\u1FF2-\u1FF4\u1FF6-\u1FFC\u2071\u207F]|[\u2090-\u209C\u2102\u2107\u210A-\u2113\u2115\u2119-\u211D\u2124\u2126\u2128]|[\u212A-\u212D\u212F-\u2139\u213C-\u213F\u2145-\u2149\u214E\u2183\u2184]|[\u2C00-\u2C2E\u2C30-\u2C5E\u2C60-\u2CE4\u2CEB-\u2CEE\u2CF2\u2CF3]|[\u2D00-\u2D25\u2D27\u2D2D\u2D30-\u2D67\u2D6F\u2D80-\u2D96\u2DA0-\u2DA6]|[\u2DA8-\u2DAE\u2DB0-\u2DB6\u2DB8-\u2DBE\u2DC0-\u2DC6\u2DC8-\u2DCE]|[\u2DD0-\u2DD6\u2DD8-\u2DDE\u2E2F\u3005\u3006\u3031-\u3035\u303B\u303C]|[\u3041-\u3096\u309D-\u309F\u30A1-\u30FA\u30FC-\u30FF\u3105-\u312D]|[\u3131-\u318E\u31A0-\u31BA\u31F0-\u31FF\u3400-\u4DB5\u4E00-\u9FCC]|[\uA000-\uA48C\uA4D0-\uA4FD\uA500-\uA60C\uA610-\uA61F\uA62A\uA62B]|[\uA640-\uA66E\uA67F-\uA697\uA6A0-\uA6E5\uA717-\uA71F\uA722-\uA788]|[\uA78B-\uA78E\uA790-\uA793\uA7A0-\uA7AA\uA7F8-\uA801\uA803-\uA805]|[\uA807-\uA80A\uA80C-\uA822\uA840-\uA873\uA882-\uA8B3\uA8F2-\uA8F7\uA8FB]|[\uA90A-\uA925\uA930-\uA946\uA960-\uA97C\uA984-\uA9B2\uA9CF\uAA00-\uAA28]|[\uAA40-\uAA42\uAA44-\uAA4B\uAA60-\uAA76\uAA7A\uAA80-\uAAAF\uAAB1\uAAB5]|[\uAAB6\uAAB9-\uAABD\uAAC0\uAAC2\uAADB-\uAADD\uAAE0-\uAAEA\uAAF2-\uAAF4]|[\uAB01-\uAB06\uAB09-\uAB0E\uAB11-\uAB16\uAB20-\uAB26\uAB28-\uAB2E]|[\uABC0-\uABE2\uAC00-\uD7A3\uD7B0-\uD7C6\uD7CB-\uD7FB\uF900-\uFA6D]|[\uFA70-\uFAD9\uFB00-\uFB06\uFB13-\uFB17\uFB1D\uFB1F-\uFB28\uFB2A-\uFB36]|[\uFB38-\uFB3C\uFB3E\uFB40\uFB41\uFB43\uFB44\uFB46-\uFBB1\uFBD3-\uFD3D]|[\uFD50-\uFD8F\uFD92-\uFDC7\uFDF0-\uFDFB\uFE70-\uFE74\uFE76-\uFEFC]|[\uFF21-\uFF3A\uFF41-\uFF5A\uFF66-\uFFBE\uFFC2-\uFFC7\uFFCA-\uFFCF]|[\uFFD2-\uFFD7\uFFDA-\uFFDC])/,/^(?:\s)/,/^(?:$)/],conditions:{string:{rules:[10,11],inclusive:!1},struct:{rules:[5,6,7],inclusive:!1},INITIAL:{rules:[0,1,2,3,4,8,9,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32],inclusive:!0}}};return t}();return w.lexer=x,t.prototype=w,w.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],111:[function(t,e,r){(function(e){"use strict";var n=t("../../logger"),i=new n.Log,a="",s=!1;r.setMessage=function(t){i.debug("Setting message to: "+t),a=t},r.getMessage=function(){return a},r.setInfo=function(t){s=t},r.getInfo=function(){return s},r.parseError=function(t,r){e.mermaidAPI.parseError(t,r)}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"../../logger":126}],112:[function(t,e,r){"use strict";var n=t("./exampleDb"),i=t("./parser/example.js"),a=t("../../d3"),s=t("../../logger"),o=new s.Log;r.draw=function(t,e,r){var s;s=i.parser,s.yy=n,o.debug("Renering example diagram"),s.parse(t);var u=a.select("#"+e),c=u.append("g");c.append("text").attr("x",100).attr("y",40).attr("class","version").attr("font-size","32px").style("text-anchor","middle").text("mermaid "+r),u.attr("height",100),u.attr("width",400)}},{"../../d3":107,"../../logger":126,"./exampleDb":111,"./parser/example.js":113}],113:[function(t,e,r){(function(n){"use strict";var i=function(){function t(){this.yy={}}var e=function(t,e,r,n){for(r=r||{},n=t.length;n--;r[t[n]]=e);return r},r=[6,9,10,12],n={trace:function(){},yy:{},symbols_:{error:2,start:3,info:4,document:5,EOF:6,line:7,statement:8,NL:9,showInfo:10,message:11,say:12,TXT:13,$accept:0,$end:1},terminals_:{2:"error",4:"info",6:"EOF",9:"NL",10:"showInfo",12:"say",13:"TXT"},productions_:[0,[3,3],[5,0],[5,2],[7,1],[7,1],[8,1],[8,1],[11,2]],performAction:function(t,e,r,n,i,a,s){var o=a.length-1;switch(i){case 1:return n;case 4:break;case 6:n.setInfo(!0);break;case 7:n.setMessage(a[o]);break;case 8:this.$=a[o-1].substring(1).trim().replace(/\\n/gm,"\n")}},table:[{3:1,4:[1,2]},{1:[3]},e(r,[2,2],{5:3}),{6:[1,4],7:5,8:6,9:[1,7],10:[1,8],11:9,12:[1,10]},{1:[2,1]},e(r,[2,3]),e(r,[2,4]),e(r,[2,5]),e(r,[2,6]),e(r,[2,7]),{13:[1,11]},e(r,[2,8])],defaultActions:{4:[2,1]},parseError:function(t,e){if(!e.recoverable){var r=function(t,e){this.message=t,this.hash=e};throw r.prototype=new Error,new r(t,e)}this.trace(t)},parse:function(t){var e=this,r=[0],n=[null],i=[],a=this.table,s="",o=0,u=0,c=0,l=2,h=1,d=i.slice.call(arguments,1),f=Object.create(this.lexer),p={yy:{}};for(var g in this.yy)Object.prototype.hasOwnProperty.call(this.yy,g)&&(p.yy[g]=this.yy[g]);f.setInput(t,p.yy),p.yy.lexer=f,p.yy.parser=this,"undefined"==typeof f.yylloc&&(f.yylloc={});var m=f.yylloc;i.push(m);var y=f.options&&f.options.ranges;"function"==typeof p.yy.parseError?this.parseError=p.yy.parseError:this.parseError=Object.getPrototypeOf(this).parseError;for(var v,b,_,A,w,x,E,k,D,C=function(){var t;return t=f.lex()||h,"number"!=typeof t&&(t=e.symbols_[t]||t),t},F={};;){if(_=r[r.length-1],this.defaultActions[_]?A=this.defaultActions[_]:((null===v||"undefined"==typeof v)&&(v=C()),A=a[_]&&a[_][v]),"undefined"==typeof A||!A.length||!A[0]){var T="";D=[];for(x in a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 2:if(E=this.productions_[A[1]][1],F.$=n[n.length-E],F._$={first_line:i[i.length-(E||1)].first_line,last_line:i[i.length-1].last_line,first_column:i[i.length-(E||1)].first_column,last_column:i[i.length-1].last_column},y&&(F._$.range=[i[i.length-(E||1)].range[0],i[i.length-1].range[1]]),w=this.performAction.apply(F,[s,u,o,p.yy,A[1],n,i].concat(d)),"undefined"!=typeof w)return 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e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{"case-insensitive":!0},performAction:function(t,e,r,n){switch(r){case 0:return 9;case 1:return 10;case 2:return 4;case 3:return 12;case 4:return 13;case 5:return 6;case 6:return"INVALID"}},rules:[/^(?:[\n]+)/i,/^(?:showInfo\b)/i,/^(?:info\b)/i,/^(?:say\b)/i,/^(?::[^#\n;]+)/i,/^(?:$)/i,/^(?:.)/i],conditions:{INITIAL:{rules:[0,1,2,3,4,5,6],inclusive:!0}}};return t}();return n.lexer=i,t.prototype=n,n.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],114:[function(t,e,r){"use strict";var n,i=t("../../logger"),a=new i.Log;if(t)try{n=t("dagre-d3")}catch(s){a.debug("Could not load dagre-d3")}n||(n=window.dagreD3),e.exports=n},{"../../logger":126,"dagre-d3":4}],115:[function(t,e,r){"use strict";var n=t("./graphDb"),i=t("./parser/flow"),a=t("./parser/dot"),s=t("../../d3"),o=t("./dagre-d3"),u=t("../../logger"),c=new u.Log,l={};e.exports.setConf=function(t){var e,r=Object.keys(t);for(e=0;e0&&(s=a.classes.join(" "));var o="";o=n(o,a.styles),i="undefined"==typeof a.text?a.id:a.text;var u="";l.htmlLabels?(u="html",i=i.replace(/fa:fa[\w\-]+/g,function(t){return''})):(i=i.replace(/
/g,"\n"),u="text");var c=0,h="";switch(a.type){case"round":c=5,h="rect";break;case"square":h="rect";break;case"diamond":h="question";break;case"odd":h="rect_left_inv_arrow";break;case"odd_right":h="rect_left_inv_arrow";break;case"circle":h="circle";break;case"ellipse":h="ellipse";break;case"group":h="rect",i="";break;default:h="rect"}e.setNode(a.id,{labelType:u,shape:h,label:i,rx:c,ry:c,"class":s,style:o,id:a.id})})},r.addEdges=function(t,e){var r,n,i=0;"undefined"!=typeof t.defaultStyle&&(n=t.defaultStyle.toString().replace(/,/g,";")),t.forEach(function(t){i++,r="arrow_open"===t.type?"none":"normal";var a="";if("undefined"!=typeof t.style)t.style.forEach(function(t){a=a+t+";"});else switch(t.stroke){case"normal":a="fill:none","undefined"!=typeof n&&(a=n);break;case"dotted":a="stroke: #333; fill:none;stroke-width:2px;stroke-dasharray:3;";break;case"thick":a="stroke: #333; stroke-width: 3.5px;fill:none"}if("undefined"==typeof t.text)"undefined"==typeof t.style?e.setEdge(t.start,t.end,{style:a,arrowhead:r},i):e.setEdge(t.start,t.end,{style:a,arrowheadStyle:"fill: #333",arrowhead:r},i);else{var s=t.text.replace(/
/g,"\n");"undefined"==typeof t.style?l.htmlLabels?e.setEdge(t.start,t.end,{labelType:"html",style:a,labelpos:"c",label:''+t.text+"",arrowheadStyle:"fill: #333",arrowhead:r},i):e.setEdge(t.start,t.end,{labelType:"text",style:"stroke: #333; stroke-width: 1.5px;fill:none",labelpos:"c",label:s,arrowheadStyle:"fill: #333",arrowhead:r},i):e.setEdge(t.start,t.end,{labelType:"text",style:a,arrowheadStyle:"fill: #333",label:s,arrowhead:r},i)}})},r.getClasses=function(t,e){var r;n.clear(),r=e?a.parser:i.parser,r.yy=n,r.parse(t);var s=n.getClasses();return"undefined"==typeof s["default"]&&(s["default"]={id:"default"},s["default"].styles=[],s["default"].clusterStyles=["rx:4px","fill: rgb(255, 255, 222)","rx: 4px","stroke: rgb(170, 170, 51)","stroke-width: 1px"],s["default"].nodeLabelStyles=["fill:#000","stroke:none","font-weight:300",'font-family:"Helvetica Neue",Helvetica,Arial,sans-serf',"font-size:14px"],s["default"].edgeLabelStyles=["fill:#000","stroke:none","font-weight:300",'font-family:"Helvetica Neue",Helvetica,Arial,sans-serf',"font-size:14px"]), +s},r.draw=function(t,e,u){c.debug("Drawing flowchart");var h;n.clear(),h=u?a.parser:i.parser,h.yy=n;try{h.parse(t)}catch(d){c.debug("Parsing failed")}var f;f=n.getDirection(),"undefined"==typeof f&&(f="TD");var p,g=new o.graphlib.Graph({multigraph:!0,compound:!0}).setGraph({rankdir:f,marginx:20,marginy:20}).setDefaultEdgeLabel(function(){return{}}),m=n.getSubGraphs(),y=0;for(y=m.length-1;y>=0;y--)p=m[y],n.addVertex(p.id,p.title,"group",void 0);var v=n.getVertices(),b=n.getEdges();y=0;var _;for(y=m.length-1;y>=0;y--)for(p=m[y],s.selectAll("cluster").append("text"),_=0;_0?t.split(",").forEach(function(t){"undefined"!=typeof vertices[t]&&vertices[t].classes.push(e)}):"undefined"!=typeof vertices[t]&&vertices[t].classes.push(e)};var setTooltip=function(t,e){"undefined"!=typeof e&&(tooltips[t]=e)},setClickFun=function setClickFun(id,functionName){"undefined"!=typeof functionName&&"undefined"!=typeof vertices[id]&&funs.push(function(element){var elem=d3.select(element).select("#"+id);null!==elem&&elem.on("click",function(){eval(functionName+"('"+id+"')")})})},setLink=function(t,e){"undefined"!=typeof e&&"undefined"!=typeof vertices[t]&&funs.push(function(r){var n=d3.select(r).select("#"+t);null!==n&&n.on("click",function(){window.open(e,"newTab")})})};exports.getTooltip=function(t){return tooltips[t]},exports.setClickEvent=function(t,e,r,n){t.indexOf(",")>0?t.split(",").forEach(function(t){setTooltip(t,n),setClickFun(t,e),setLink(t,r)}):(setTooltip(t,n),setClickFun(t,e),setLink(t,r))},exports.bindFunctions=function(t){funs.forEach(function(e){e(t)})},exports.getDirection=function(){return direction},exports.getVertices=function(){return vertices},exports.getEdges=function(){return edges},exports.getClasses=function(){return classes};var setupToolTips=function(t){var e=d3.select(".mermaidTooltip");null===e[0][0]&&(e=d3.select("body").append("div").attr("class","mermaidTooltip").style("opacity",0));var r=d3.select(t).select("svg"),n=r.selectAll("g.node");n.on("mouseover",function(){var t=d3.select(this),r=t.attr("title");if(null!==r){var n=this.getBoundingClientRect();e.transition().duration(200).style("opacity",".9"),e.html(t.attr("title")).style("left",n.left+(n.right-n.left)/2+"px").style("top",n.top-14+document.body.scrollTop+"px"),t.classed("hover",!0)}}).on("mouseout",function(){e.transition().duration(500).style("opacity",0);var t=d3.select(this);t.classed("hover",!1)})};funs.push(setupToolTips),exports.clear=function(){vertices={},classes={},edges=[],funs=[],funs.push(setupToolTips),subGraphs=[],subCount=0,tooltips=[]},exports.defaultStyle=function(){return"fill:#ffa;stroke: #f66; stroke-width: 3px; stroke-dasharray: 5, 5;fill:#ffa;stroke: #666;"},exports.addSubGraph=function(t,e){function r(t){var e={"boolean":{},number:{},string:{}},r=[];return t.filter(function(t){var n=typeof t;return" "===t?!1:n in e?e[n].hasOwnProperty(t)?!1:e[n][t]=!0:r.indexOf(t)>=0?!1:r.push(t)})}var n=[];n=r(n.concat.apply(n,t));var i={id:"subGraph"+subCount,nodes:n,title:e};return subGraphs.push(i),subCount+=1,i.id};var getPosForId=function(t){var e;for(e=0;e2e3)){if(posCrossRef[secCount]=r,subGraphs[r].id===e)return{result:!0,count:0};for(var i=0,a=1;i=0){var o=t(e,s);if(o.result)return{result:!0,count:a+o.count};a+=o.count}i+=1}return{result:!1,count:a}}};exports.getDepthFirstPos=function(t){return posCrossRef[t]},exports.indexNodes=function(){secCount=-1,subGraphs.length>0&&indexNodes("none",subGraphs.length-1,0)},exports.getSubGraphs=function(){return subGraphs},exports.parseError=function(t,e){global.mermaidAPI.parseError(t,e)}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"../../d3":107,"../../logger":126}],117:[function(t,e,r){(function(n){"use strict";var i=function(){function t(){this.yy={}}var e=function(t,e,r,n){for(r=r||{},n=t.length;n--;r[t[n]]=e);return r},r=[1,5],n=[1,6],i=[1,12],a=[1,13],s=[1,14],o=[1,15],u=[1,16],c=[1,17],l=[1,18],h=[1,19],d=[1,20],f=[1,21],p=[1,22],g=[8,16,17,18,19,20,21,22,23,24,25,26],m=[1,37],y=[1,33],v=[1,34],b=[1,35],_=[1,36],A=[8,10,16,17,18,19,20,21,22,23,24,25,26,28,32,37,39,40,45,57,58],w=[10,28],x=[10,28,37,57,58],E=[2,49],k=[1,45],D=[1,48],C=[1,49],F=[1,52],T=[2,65],S=[1,65],B=[1,66],L=[1,67],O=[1,68],I=[1,69],N=[1,70],M=[1,71],R=[1,72],P=[1,73],q=[8,16,17,18,19,20,21,22,23,24,25,26,47],j=[10,28,37],U={trace:function(){},yy:{},symbols_:{error:2,expressions:3,graph:4,EOF:5,graphStatement:6,idStatement:7,"{":8,stmt_list:9,"}":10,strict:11,GRAPH:12,DIGRAPH:13,textNoTags:14,textNoTagsToken:15,ALPHA:16,NUM:17,COLON:18,PLUS:19,EQUALS:20,MULT:21,DOT:22,BRKT:23,SPACE:24,MINUS:25,keywords:26,stmt:27,";":28,node_stmt:29,edge_stmt:30,attr_stmt:31,"=":32,subgraph:33,attr_list:34,NODE:35,EDGE:36,"[":37,a_list:38,"]":39,",":40,edgeRHS:41,node_id:42,edgeop:43,port:44,":":45,compass_pt:46,SUBGRAPH:47,n:48,ne:49,e:50,se:51,s:52,sw:53,w:54,nw:55,c:56,ARROW_POINT:57,ARROW_OPEN:58,$accept:0,$end:1},terminals_:{2:"error",5:"EOF",8:"{",10:"}",11:"strict",12:"GRAPH",13:"DIGRAPH",16:"ALPHA",17:"NUM",18:"COLON",19:"PLUS",20:"EQUALS",21:"MULT",22:"DOT",23:"BRKT",24:"SPACE",25:"MINUS",26:"keywords",28:";",32:"=",35:"NODE",36:"EDGE",37:"[",39:"]",40:",",45:":",47:"SUBGRAPH",48:"n",49:"ne",50:"e",51:"se",52:"s",53:"sw",54:"w",55:"nw",56:"c",57:"ARROW_POINT",58:"ARROW_OPEN"},productions_:[0,[3,2],[4,5],[4,6],[4,4],[6,1],[6,1],[7,1],[14,1],[14,2],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[15,1],[9,1],[9,3],[27,1],[27,1],[27,1],[27,3],[27,1],[31,2],[31,2],[31,2],[34,4],[34,3],[34,3],[34,2],[38,5],[38,5],[38,3],[30,3],[30,3],[30,2],[30,2],[41,3],[41,3],[41,2],[41,2],[29,2],[29,1],[42,2],[42,1],[44,4],[44,2],[44,2],[33,5],[33,4],[33,3],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,1],[46,0],[43,1],[43,1]],performAction:function(t,e,r,n,i,a,s){var o=a.length-1;switch(i){case 1:this.$=a[o-1];break;case 2:this.$=a[o-4];break;case 3:this.$=a[o-5];break;case 4:this.$=a[o-3];break;case 8:case 10:case 11:this.$=a[o];break;case 9:this.$=a[o-1]+""+a[o];break;case 12:case 13:case 14:case 15:case 16:case 18:case 19:case 20:this.$=a[o];break;case 17:this.$="
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a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 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this.yy=e||this.yy||{},this._input=t,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var t=this._input[0];this.yytext+=t,this.yyleng++,this.offset++,this.match+=t,this.matched+=t;var e=t.match(/(?:\r\n?|\n).*/g);return e?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),t},unput:function(t){var e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{},performAction:function(t,e,r,n){switch(r){case 0:break;case 1:this.begin("string");break;case 2:this.popState();break;case 3:return"STR";case 4:return 71;case 5:return 78;case 6:return 72;case 7:return 73;case 8:return 74;case 9:return 75;case 10:return 12;case 11:return 30;case 12:return 32;case 13:return 13;case 14:return 13;case 15:return 13;case 16:return 13;case 17:return 13;case 18:return 13;case 19:return 81;case 20:return 90;case 21:return 88;case 22:return 8;case 23:return 85;case 24:return 97;case 25:return 16;case 26:return 15;case 27:return 17;case 28:return 18;case 29:return 53;case 30:return 51;case 31:return 52;case 32:return 54;case 33:return 58;case 34:return 56;case 35:return 57;case 36:return 59;case 37:return 58;case 38:return 56;case 39:return 57;case 40:return 59;case 41:return 63;case 42:return 61;case 43:return 62;case 44:return 64;case 45:return 50;case 46:return 55;case 47:return 60;case 48:return 40;case 49:return 41;case 50:return 46;case 51:return 91;case 52:return 95;case 53:return 83;case 54:return 96;case 55:return 96;case 56:return 87;case 57:return 93;case 58:return 94;case 59:return 65;case 60:return 38;case 61:return 39;case 62:return 36;case 63:return 37;case 64:return 42;case 65:return 43;case 66:return 100;case 67:return 9;case 68:return 10;case 69:return 11}},rules:[/^(?:%%[^\n]*)/,/^(?:["])/,/^(?:["])/,/^(?:[^"]*)/,/^(?:style\b)/,/^(?:default\b)/,/^(?:linkStyle\b)/,/^(?:classDef\b)/,/^(?:class\b)/,/^(?:click\b)/,/^(?:graph\b)/,/^(?:subgraph\b)/,/^(?:end\b\s*)/,/^(?:LR\b)/,/^(?:RL\b)/,/^(?:TB\b)/,/^(?:BT\b)/,/^(?:TD\b)/,/^(?:BR\b)/,/^(?:[0-9]+)/,/^(?:#)/,/^(?::)/,/^(?:;)/,/^(?:,)/,/^(?:\*)/,/^(?:<)/,/^(?:>)/,/^(?:\^)/,/^(?:v\b)/,/^(?:\s*--[x]\s*)/,/^(?:\s*-->\s*)/,/^(?:\s*--[o]\s*)/,/^(?:\s*---\s*)/,/^(?:\s*-\.-[x]\s*)/,/^(?:\s*-\.->\s*)/,/^(?:\s*-\.-[o]\s*)/,/^(?:\s*-\.-\s*)/,/^(?:\s*.-[x]\s*)/,/^(?:\s*\.->\s*)/,/^(?:\s*\.-[o]\s*)/,/^(?:\s*\.-\s*)/,/^(?:\s*==[x]\s*)/,/^(?:\s*==>\s*)/,/^(?:\s*==[o]\s*)/,/^(?:\s*==[\=]\s*)/,/^(?:\s*--\s*)/,/^(?:\s*-\.\s*)/,/^(?:\s*==\s*)/,/^(?:\(-)/,/^(?:-\))/,/^(?:-)/,/^(?:\.)/,/^(?:\+)/,/^(?:%)/,/^(?:=)/,/^(?:=)/,/^(?:[A-Za-z]+)/,/^(?:[!"#$%&'*+,-.`?\\_\/])/,/^(?:[\u00AA\u00B5\u00BA\u00C0-\u00D6\u00D8-\u00F6]|[\u00F8-\u02C1\u02C6-\u02D1\u02E0-\u02E4\u02EC\u02EE\u0370-\u0374\u0376\u0377]|[\u037A-\u037D\u0386\u0388-\u038A\u038C\u038E-\u03A1\u03A3-\u03F5]|[\u03F7-\u0481\u048A-\u0527\u0531-\u0556\u0559\u0561-\u0587\u05D0-\u05EA]|[\u05F0-\u05F2\u0620-\u064A\u066E\u066F\u0671-\u06D3\u06D5\u06E5\u06E6\u06EE]|[\u06EF\u06FA-\u06FC\u06FF\u0710\u0712-\u072F\u074D-\u07A5\u07B1\u07CA-\u07EA]|[\u07F4\u07F5\u07FA\u0800-\u0815\u081A\u0824\u0828\u0840-\u0858\u08A0]|[\u08A2-\u08AC\u0904-\u0939\u093D\u0950\u0958-\u0961\u0971-\u0977]|[\u0979-\u097F\u0985-\u098C\u098F\u0990\u0993-\u09A8\u09AA-\u09B0\u09B2]|[\u09B6-\u09B9\u09BD\u09CE\u09DC\u09DD\u09DF-\u09E1\u09F0\u09F1\u0A05-\u0A0A]|[\u0A0F\u0A10\u0A13-\u0A28\u0A2A-\u0A30\u0A32\u0A33\u0A35\u0A36\u0A38\u0A39]|[\u0A59-\u0A5C\u0A5E\u0A72-\u0A74\u0A85-\u0A8D\u0A8F-\u0A91\u0A93-\u0AA8]|[\u0AAA-\u0AB0\u0AB2\u0AB3\u0AB5-\u0AB9\u0ABD\u0AD0\u0AE0\u0AE1\u0B05-\u0B0C]|[\u0B0F\u0B10\u0B13-\u0B28\u0B2A-\u0B30\u0B32\u0B33\u0B35-\u0B39\u0B3D\u0B5C]|[\u0B5D\u0B5F-\u0B61\u0B71\u0B83\u0B85-\u0B8A\u0B8E-\u0B90\u0B92-\u0B95\u0B99]|[\u0B9A\u0B9C\u0B9E\u0B9F\u0BA3\u0BA4\u0BA8-\u0BAA\u0BAE-\u0BB9\u0BD0]|[\u0C05-\u0C0C\u0C0E-\u0C10\u0C12-\u0C28\u0C2A-\u0C33\u0C35-\u0C39\u0C3D]|[\u0C58\u0C59\u0C60\u0C61\u0C85-\u0C8C\u0C8E-\u0C90\u0C92-\u0CA8\u0CAA-\u0CB3]|[\u0CB5-\u0CB9\u0CBD\u0CDE\u0CE0\u0CE1\u0CF1\u0CF2\u0D05-\u0D0C\u0D0E-\u0D10]|[\u0D12-\u0D3A\u0D3D\u0D4E\u0D60\u0D61\u0D7A-\u0D7F\u0D85-\u0D96\u0D9A-\u0DB1]|[\u0DB3-\u0DBB\u0DBD\u0DC0-\u0DC6\u0E01-\u0E30\u0E32\u0E33\u0E40-\u0E46\u0E81]|[\u0E82\u0E84\u0E87\u0E88\u0E8A\u0E8D\u0E94-\u0E97\u0E99-\u0E9F\u0EA1-\u0EA3]|[\u0EA5\u0EA7\u0EAA\u0EAB\u0EAD-\u0EB0\u0EB2\u0EB3\u0EBD\u0EC0-\u0EC4\u0EC6]|[\u0EDC-\u0EDF\u0F00\u0F40-\u0F47\u0F49-\u0F6C\u0F88-\u0F8C\u1000-\u102A]|[\u103F\u1050-\u1055\u105A-\u105D\u1061\u1065\u1066\u106E-\u1070\u1075-\u1081]|[\u108E\u10A0-\u10C5\u10C7\u10CD\u10D0-\u10FA\u10FC-\u1248\u124A-\u124D]|[\u1250-\u1256\u1258\u125A-\u125D\u1260-\u1288\u128A-\u128D\u1290-\u12B0]|[\u12B2-\u12B5\u12B8-\u12BE\u12C0\u12C2-\u12C5\u12C8-\u12D6\u12D8-\u1310]|[\u1312-\u1315\u1318-\u135A\u1380-\u138F\u13A0-\u13F4\u1401-\u166C]|[\u166F-\u167F\u1681-\u169A\u16A0-\u16EA\u1700-\u170C\u170E-\u1711]|[\u1720-\u1731\u1740-\u1751\u1760-\u176C\u176E-\u1770\u1780-\u17B3\u17D7]|[\u17DC\u1820-\u1877\u1880-\u18A8\u18AA\u18B0-\u18F5\u1900-\u191C]|[\u1950-\u196D\u1970-\u1974\u1980-\u19AB\u19C1-\u19C7\u1A00-\u1A16]|[\u1A20-\u1A54\u1AA7\u1B05-\u1B33\u1B45-\u1B4B\u1B83-\u1BA0\u1BAE\u1BAF]|[\u1BBA-\u1BE5\u1C00-\u1C23\u1C4D-\u1C4F\u1C5A-\u1C7D\u1CE9-\u1CEC]|[\u1CEE-\u1CF1\u1CF5\u1CF6\u1D00-\u1DBF\u1E00-\u1F15\u1F18-\u1F1D]|[\u1F20-\u1F45\u1F48-\u1F4D\u1F50-\u1F57\u1F59\u1F5B\u1F5D\u1F5F-\u1F7D]|[\u1F80-\u1FB4\u1FB6-\u1FBC\u1FBE\u1FC2-\u1FC4\u1FC6-\u1FCC\u1FD0-\u1FD3]|[\u1FD6-\u1FDB\u1FE0-\u1FEC\u1FF2-\u1FF4\u1FF6-\u1FFC\u2071\u207F]|[\u2090-\u209C\u2102\u2107\u210A-\u2113\u2115\u2119-\u211D\u2124\u2126\u2128]|[\u212A-\u212D\u212F-\u2139\u213C-\u213F\u2145-\u2149\u214E\u2183\u2184]|[\u2C00-\u2C2E\u2C30-\u2C5E\u2C60-\u2CE4\u2CEB-\u2CEE\u2CF2\u2CF3]|[\u2D00-\u2D25\u2D27\u2D2D\u2D30-\u2D67\u2D6F\u2D80-\u2D96\u2DA0-\u2DA6]|[\u2DA8-\u2DAE\u2DB0-\u2DB6\u2DB8-\u2DBE\u2DC0-\u2DC6\u2DC8-\u2DCE]|[\u2DD0-\u2DD6\u2DD8-\u2DDE\u2E2F\u3005\u3006\u3031-\u3035\u303B\u303C]|[\u3041-\u3096\u309D-\u309F\u30A1-\u30FA\u30FC-\u30FF\u3105-\u312D]|[\u3131-\u318E\u31A0-\u31BA\u31F0-\u31FF\u3400-\u4DB5\u4E00-\u9FCC]|[\uA000-\uA48C\uA4D0-\uA4FD\uA500-\uA60C\uA610-\uA61F\uA62A\uA62B]|[\uA640-\uA66E\uA67F-\uA697\uA6A0-\uA6E5\uA717-\uA71F\uA722-\uA788]|[\uA78B-\uA78E\uA790-\uA793\uA7A0-\uA7AA\uA7F8-\uA801\uA803-\uA805]|[\uA807-\uA80A\uA80C-\uA822\uA840-\uA873\uA882-\uA8B3\uA8F2-\uA8F7\uA8FB]|[\uA90A-\uA925\uA930-\uA946\uA960-\uA97C\uA984-\uA9B2\uA9CF\uAA00-\uAA28]|[\uAA40-\uAA42\uAA44-\uAA4B\uAA60-\uAA76\uAA7A\uAA80-\uAAAF\uAAB1\uAAB5]|[\uAAB6\uAAB9-\uAABD\uAAC0\uAAC2\uAADB-\uAADD\uAAE0-\uAAEA\uAAF2-\uAAF4]|[\uAB01-\uAB06\uAB09-\uAB0E\uAB11-\uAB16\uAB20-\uAB26\uAB28-\uAB2E]|[\uABC0-\uABE2\uAC00-\uD7A3\uD7B0-\uD7C6\uD7CB-\uD7FB\uF900-\uFA6D]|[\uFA70-\uFAD9\uFB00-\uFB06\uFB13-\uFB17\uFB1D\uFB1F-\uFB28\uFB2A-\uFB36]|[\uFB38-\uFB3C\uFB3E\uFB40\uFB41\uFB43\uFB44\uFB46-\uFBB1\uFBD3-\uFD3D]|[\uFD50-\uFD8F\uFD92-\uFDC7\uFDF0-\uFDFB\uFE70-\uFE74\uFE76-\uFEFC]|[\uFF21-\uFF3A\uFF41-\uFF5A\uFF66-\uFFBE\uFFC2-\uFFC7\uFFCA-\uFFCF]|[\uFFD2-\uFFD7\uFFDA-\uFFDC])/,/^(?:\|)/,/^(?:\()/,/^(?:\))/,/^(?:\[)/,/^(?:\])/,/^(?:\{)/,/^(?:\})/,/^(?:")/,/^(?:\n+)/,/^(?:\s)/,/^(?:$)/],conditions:{string:{rules:[2,3],inclusive:!1},INITIAL:{rules:[0,1,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69],inclusive:!0}}};return t}();return Dt.lexer=Ct,t.prototype=Dt,Dt.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],119:[function(t,e,r){(function(e){"use strict";var n=t("moment"),i=t("../../logger"),a=new i.Log,s="",o="",u=[],c=[],l="";r.clear=function(){u=[],c=[],l="",o="",g=0,h=void 0,d=void 0,b=[]},r.setDateFormat=function(t){s=t},r.getDateFormat=function(){return s},r.setTitle=function(t){o=t},r.getTitle=function(){return o},r.addSection=function(t){l=t,u.push(t)},r.getTasks=function(){for(var t=A(),e=10,r=0;!t&&e>r;)t=A(),r++;return c=b};var h,d,f=function(t,e,i){i=i.trim();var s=/^after\s+([\d\w\-]+)/,o=s.exec(i.trim());if(null!==o){var u=r.findTaskById(o[1]);if("undefined"==typeof u){var c=new Date;return c.setHours(0,0,0,0),c}return u.endTime}return n(i,e.trim(),!0).isValid()?n(i,e.trim(),!0).toDate():(a.debug("Invalid date:"+i),a.debug("With date format:"+e.trim()),new Date)},p=function(t,e,r){if(r=r.trim(),n(r,e.trim(),!0).isValid())return n(r,e.trim()).toDate();var i=n(t),a=/^([\d]+)([wdhms])/,s=a.exec(r.trim());if(null!==s){switch(s[2]){case"s":i.add(s[1],"seconds");break;case"m":i.add(s[1],"minutes");break;case"h":i.add(s[1],"hours");break;case"d":i.add(s[1],"days");break;case"w":i.add(s[1],"weeks")}return i.toDate()}return i.toDate()},g=0,m=function(t){return"undefined"==typeof t?(g+=1,"task"+g):t},y=function(t,e){var n;n=":"===e.substr(0,1)?e.substr(1,e.length):e;for(var i=n.split(","),a={},s=r.getDateFormat(),o=!0;o;)o=!1,i[0].match(/^\s*active\s*$/)&&(a.active=!0,i.shift(1),o=!0),i[0].match(/^\s*done\s*$/)&&(a.done=!0,i.shift(1),o=!0),i[0].match(/^\s*crit\s*$/)&&(a.crit=!0,i.shift(1),o=!0);var 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r=function(t,e){this.message=t,this.hash=e};throw r.prototype=new Error,new r(t,e)}this.trace(t)},parse:function(t){var e=this,r=[0],n=[null],i=[],a=this.table,s="",o=0,u=0,c=0,l=2,h=1,d=i.slice.call(arguments,1),f=Object.create(this.lexer),p={yy:{}};for(var g in this.yy)Object.prototype.hasOwnProperty.call(this.yy,g)&&(p.yy[g]=this.yy[g]);f.setInput(t,p.yy),p.yy.lexer=f,p.yy.parser=this,"undefined"==typeof f.yylloc&&(f.yylloc={});var m=f.yylloc;i.push(m);var y=f.options&&f.options.ranges;"function"==typeof p.yy.parseError?this.parseError=p.yy.parseError:this.parseError=Object.getPrototypeOf(this).parseError;for(var v,b,_,A,w,x,E,k,D,C=function(){var t;return t=f.lex()||h,"number"!=typeof t&&(t=e.symbols_[t]||t),t},F={};;){if(_=r[r.length-1],this.defaultActions[_]?A=this.defaultActions[_]:((null===v||"undefined"==typeof v)&&(v=C()),A=a[_]&&a[_][v]),"undefined"==typeof A||!A.length||!A[0]){var T="";D=[];for(x in a[_])this.terminals_[x]&&x>l&&D.push("'"+this.terminals_[x]+"'");T=f.showPosition?"Parse error on line "+(o+1)+":\n"+f.showPosition()+"\nExpecting "+D.join(", ")+", got '"+(this.terminals_[v]||v)+"'":"Parse error on line "+(o+1)+": Unexpected "+(v==h?"end of input":"'"+(this.terminals_[v]||v)+"'"),this.parseError(T,{text:f.match,token:this.terminals_[v]||v,line:f.yylineno,loc:m,expected:D})}if(A[0]instanceof Array&&A.length>1)throw new Error("Parse Error: multiple actions possible at state: "+_+", token: "+v);switch(A[0]){case 1:r.push(v),n.push(f.yytext),i.push(f.yylloc),r.push(A[1]),v=null,b?(v=b,b=null):(u=f.yyleng,s=f.yytext,o=f.yylineno,m=f.yylloc,c>0&&c--);break;case 2:if(E=this.productions_[A[1]][1],F.$=n[n.length-E],F._$={first_line:i[i.length-(E||1)].first_line,last_line:i[i.length-1].last_line,first_column:i[i.length-(E||1)].first_column,last_column:i[i.length-1].last_column},y&&(F._$.range=[i[i.length-(E||1)].range[0],i[i.length-1].range[1]]),w=this.performAction.apply(F,[s,u,o,p.yy,A[1],n,i].concat(d)),"undefined"!=typeof w)return w;E&&(r=r.slice(0,-1*E*2),n=n.slice(0,-1*E),i=i.slice(0,-1*E)),r.push(this.productions_[A[1]][0]),n.push(F.$),i.push(F._$),k=a[r[r.length-2]][r[r.length-1]],r.push(k);break;case 3:return!0}}return!0}},m=function(){var t={EOF:1,parseError:function(t,e){if(!this.yy.parser)throw new Error(t);this.yy.parser.parseError(t,e)},setInput:function(t,e){return this.yy=e||this.yy||{},this._input=t,this._more=this._backtrack=this.done=!1,this.yylineno=this.yyleng=0,this.yytext=this.matched=this.match="",this.conditionStack=["INITIAL"],this.yylloc={first_line:1,first_column:0,last_line:1,last_column:0},this.options.ranges&&(this.yylloc.range=[0,0]),this.offset=0,this},input:function(){var t=this._input[0];this.yytext+=t,this.yyleng++,this.offset++,this.match+=t,this.matched+=t;var e=t.match(/(?:\r\n?|\n).*/g);return e?(this.yylineno++,this.yylloc.last_line++):this.yylloc.last_column++,this.options.ranges&&this.yylloc.range[1]++,this._input=this._input.slice(1),t},unput:function(t){var e=t.length,r=t.split(/(?:\r\n?|\n)/g);this._input=t+this._input,this.yytext=this.yytext.substr(0,this.yytext.length-e),this.offset-=e;var n=this.match.split(/(?:\r\n?|\n)/g);this.match=this.match.substr(0,this.match.length-1),this.matched=this.matched.substr(0,this.matched.length-1),r.length-1&&(this.yylineno-=r.length-1);var i=this.yylloc.range;return this.yylloc={first_line:this.yylloc.first_line,last_line:this.yylineno+1,first_column:this.yylloc.first_column,last_column:r?(r.length===n.length?this.yylloc.first_column:0)+n[n.length-r.length].length-r[0].length:this.yylloc.first_column-e},this.options.ranges&&(this.yylloc.range=[i[0],i[0]+this.yyleng-e]),this.yyleng=this.yytext.length,this},more:function(){return this._more=!0,this},reject:function(){return this.options.backtrack_lexer?(this._backtrack=!0,this):this.parseError("Lexical error on line "+(this.yylineno+1)+". You can only invoke reject() in the lexer when the lexer is of the backtracking persuasion (options.backtrack_lexer = true).\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},less:function(t){this.unput(this.match.slice(t))},pastInput:function(){var t=this.matched.substr(0,this.matched.length-this.match.length);return(t.length>20?"...":"")+t.substr(-20).replace(/\n/g,"")},upcomingInput:function(){var t=this.match;return t.length<20&&(t+=this._input.substr(0,20-t.length)),(t.substr(0,20)+(t.length>20?"...":"")).replace(/\n/g,"")},showPosition:function(){var t=this.pastInput(),e=new Array(t.length+1).join("-");return t+this.upcomingInput()+"\n"+e+"^"},test_match:function(t,e){var r,n,i;if(this.options.backtrack_lexer&&(i={yylineno:this.yylineno,yylloc:{first_line:this.yylloc.first_line,last_line:this.last_line,first_column:this.yylloc.first_column,last_column:this.yylloc.last_column},yytext:this.yytext,match:this.match,matches:this.matches,matched:this.matched,yyleng:this.yyleng,offset:this.offset,_more:this._more,_input:this._input,yy:this.yy,conditionStack:this.conditionStack.slice(0),done:this.done},this.options.ranges&&(i.yylloc.range=this.yylloc.range.slice(0))),n=t[0].match(/(?:\r\n?|\n).*/g),n&&(this.yylineno+=n.length),this.yylloc={first_line:this.yylloc.last_line,last_line:this.yylineno+1,first_column:this.yylloc.last_column,last_column:n?n[n.length-1].length-n[n.length-1].match(/\r?\n?/)[0].length:this.yylloc.last_column+t[0].length},this.yytext+=t[0],this.match+=t[0],this.matches=t,this.yyleng=this.yytext.length,this.options.ranges&&(this.yylloc.range=[this.offset,this.offset+=this.yyleng]),this._more=!1,this._backtrack=!1,this._input=this._input.slice(t[0].length),this.matched+=t[0],r=this.performAction.call(this,this.yy,this,e,this.conditionStack[this.conditionStack.length-1]),this.done&&this._input&&(this.done=!1),r)return r;if(this._backtrack){for(var a in i)this[a]=i[a];return!1}return!1},next:function(){if(this.done)return this.EOF;this._input||(this.done=!0);var t,e,r,n;this._more||(this.yytext="",this.match="");for(var i=this._currentRules(),a=0;ae[0].length)){if(e=r,n=a,this.options.backtrack_lexer){if(t=this.test_match(r,i[a]),t!==!1)return t;if(this._backtrack){e=!1;continue}return!1}if(!this.options.flex)break}return e?(t=this.test_match(e,i[n]),t!==!1?t:!1):""===this._input?this.EOF:this.parseError("Lexical error on line "+(this.yylineno+1)+". Unrecognized text.\n"+this.showPosition(),{text:"",token:null,line:this.yylineno})},lex:function(){var t=this.next();return t?t:this.lex()},begin:function(t){this.conditionStack.push(t)},popState:function(){var t=this.conditionStack.length-1;return t>0?this.conditionStack.pop():this.conditionStack[0]},_currentRules:function(){return this.conditionStack.length&&this.conditionStack[this.conditionStack.length-1]?this.conditions[this.conditionStack[this.conditionStack.length-1]].rules:this.conditions.INITIAL.rules},topState:function(t){return t=this.conditionStack.length-1-Math.abs(t||0),t>=0?this.conditionStack[t]:"INITIAL"},pushState:function(t){this.begin(t)},stateStackSize:function(){return this.conditionStack.length},options:{"case-insensitive":!0},performAction:function(t,e,r,n){switch(r){case 0:return 9;case 1:break;case 2:break;case 3:break;case 4:break;case 5:return this.begin("ID"),10;case 6:return this.begin("ALIAS"),33;case 7:return this.popState(),this.popState(),this.begin("LINE"),12;case 8:return this.popState(),this.popState(),9;case 9:return this.begin("LINE"),18;case 10:return this.begin("LINE"),20;case 11:return this.begin("LINE"),21;case 12:return this.begin("LINE"),22;case 13:return this.popState(),13;case 14:return 19;case 15:return 30;case 16:return 31;case 17:return 26;case 18:return 23;case 19:return 16;case 20:return 4;case 21:return 29;case 22:return 9;case 23:return 33;case 24:return 36;case 25:return 37;case 26:return 34;case 27:return 35;case 28:return 38;case 29:return 39;case 30:return 40;case 31:return 9;case 32:return"INVALID"}},rules:[/^(?:[\n]+)/i,/^(?:\s+)/i,/^(?:((?!\n)\s)+)/i,/^(?:#[^\n]*)/i,/^(?:%[^\n]*)/i,/^(?:participant\b)/i,/^(?:[^\->:\n,;]+?(?=((?!\n)\s)+as(?!\n)\s|[#\n;]|$))/i,/^(?:as\b)/i,/^(?:(?:))/i,/^(?:loop\b)/i,/^(?:opt\b)/i,/^(?:alt\b)/i,/^(?:else\b)/i,/^(?:[^#\n;]*)/i,/^(?:end\b)/i,/^(?:left of\b)/i,/^(?:right of\b)/i,/^(?:over\b)/i,/^(?:note\b)/i,/^(?:title\b)/i,/^(?:sequenceDiagram\b)/i,/^(?:,)/i,/^(?:;)/i,/^(?:[^\->:\n,;]+)/i,/^(?:->>)/i,/^(?:-->>)/i,/^(?:->)/i,/^(?:-->)/i,/^(?:-[x])/i,/^(?:--[x])/i,/^(?::[^#\n;]+)/i,/^(?:$)/i,/^(?:.)/i],conditions:{LINE:{rules:[2,3,13],inclusive:!1},ALIAS:{rules:[2,3,7,8],inclusive:!1},ID:{rules:[2,3,6],inclusive:!1},INITIAL:{rules:[0,1,3,4,5,9,10,11,12,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32],inclusive:!0}}};return t}();return g.lexer=m,t.prototype=g,g.Parser=t,new t}();"undefined"!=typeof t&&"undefined"!=typeof r&&(r.parser=i,r.Parser=i.Parser,r.parse=function(){return i.parse.apply(i,arguments)},r.main=function(e){e[1]||(console.log("Usage: "+e[0]+" FILE"),n.exit(1));var i=t("fs").readFileSync(t("path").normalize(e[1]),"utf8");return r.parser.parse(i)},"undefined"!=typeof e&&t.main===e&&r.main(n.argv.slice(1)))}).call(this,t("_process"))},{_process:3,fs:1,path:2}],123:[function(t,e,r){(function(e){"use strict";var n={},i=[],a=[],s=t("../../logger"),o=new s.Log;r.addActor=function(t,e,r){var i=n[t];i&&e===i.name&&null==r||(null==r&&(r=e),n[t]={name:e,description:r})},r.addMessage=function(t,e,r,n){i.push({from:t,to:e,message:r,answer:n})},r.addSignal=function(t,e,r,n){o.debug("Adding message from="+t+" to="+e+" message="+r+" type="+n),i.push({from:t,to:e,message:r,type:n})},r.getMessages=function(){return i},r.getActors=function(){return n},r.getActor=function(t){return n[t]},r.getActorKeys=function(){return Object.keys(n)},r.clear=function(){n={},i=[]},r.LINETYPE={SOLID:0,DOTTED:1,NOTE:2,SOLID_CROSS:3,DOTTED_CROSS:4,SOLID_OPEN:5,DOTTED_OPEN:6,LOOP_START:10,LOOP_END:11,ALT_START:12,ALT_ELSE:13,ALT_END:14,OPT_START:15,OPT_END:16},r.ARROWTYPE={FILLED:0,OPEN:1},r.PLACEMENT={LEFTOF:0,RIGHTOF:1,OVER:2},r.addNote=function(t,e,n){var s={actor:t,placement:e,message:n},o=[].concat(t,t);a.push(s),i.push({from:o[0],to:o[1],message:n,type:r.LINETYPE.NOTE,placement:e})},r.parseError=function(t,r){e.mermaidAPI.parseError(t,r)},r.apply=function(t){if(t instanceof Array)t.forEach(function(t){r.apply(t)});else switch(t.type){case"addActor":r.addActor(t.actor,t.actor,t.description);break;case"addNote":r.addNote(t.actor,t.placement,t.text);break;case"addMessage":r.addSignal(t.from,t.to,t.msg,t.signalType);break;case"loopStart":r.addSignal(void 0,void 0,t.loopText,t.signalType);break;case"loopEnd":r.addSignal(void 0,void 0,void 0,t.signalType);break;case"optStart":r.addSignal(void 0,void 0,t.optText,t.signalType);break;case"optEnd":r.addSignal(void 0,void 0,void 0,t.signalType);break;case"altStart":r.addSignal(void 0,void 0,t.altText,t.signalType);break;case"else":r.addSignal(void 0,void 0,t.altText,t.signalType);break;case"altEnd":r.addSignal(void 0,void 0,void 0,t.signalType)}}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"../../logger":126}],124:[function(t,e,r){"use strict";var n=t("./parser/sequenceDiagram").parser;n.yy=t("./sequenceDb");var i=t("./svgDraw"),a=t("../../d3"),s=t("../../logger"),o=new s.Log,u={diagramMarginX:50,diagramMarginY:10,actorMargin:50,width:150,height:65,boxMargin:10,boxTextMargin:5,noteMargin:10,messageMargin:35,mirrorActors:!1,bottomMarginAdj:1};r.bounds={data:{startx:void 0,stopx:void 0,starty:void 0,stopy:void 0},verticalPos:0,list:[],init:function(){this.list=[],this.data={startx:void 0,stopx:void 0,starty:void 0,stopy:void 0},this.verticalPos=0},updateVal:function(t,e,r,n){"undefined"==typeof t[e]?t[e]=r:t[e]=n(r,t[e])},updateLoops:function(t,e,n,i){var a=this,s=0;this.list.forEach(function(o){s++;var c=a.list.length-s+1;a.updateVal(o,"startx",t-c*u.boxMargin,Math.min),a.updateVal(o,"starty",e-c*u.boxMargin,Math.min),a.updateVal(o,"stopx",n+c*u.boxMargin,Math.max),a.updateVal(o,"stopy",i+c*u.boxMargin,Math.max),a.updateVal(r.bounds.data,"startx",t-c*u.boxMargin,Math.min),a.updateVal(r.bounds.data,"starty",e-c*u.boxMargin,Math.min),a.updateVal(r.bounds.data,"stopx",n+c*u.boxMargin,Math.max),a.updateVal(r.bounds.data,"stopy",i+c*u.boxMargin,Math.max)})},insert:function(t,e,n,i){var a,s,o,u;a=Math.min(t,n),o=Math.max(t,n),s=Math.min(e,i),u=Math.max(e,i),this.updateVal(r.bounds.data,"startx",a,Math.min),this.updateVal(r.bounds.data,"starty",s,Math.min),this.updateVal(r.bounds.data,"stopx",o,Math.max), +this.updateVal(r.bounds.data,"stopy",u,Math.max),this.updateLoops(a,s,o,u)},newLoop:function(t){this.list.push({startx:void 0,starty:this.verticalPos,stopx:void 0,stopy:void 0,title:t})},endLoop:function(){var t=this.list.pop();return t},addElseToLoop:function(t){var e=this.list.pop();e.elsey=r.bounds.getVerticalPos(),e.elseText=t,this.list.push(e)},bumpVerticalPos:function(t){this.verticalPos=this.verticalPos+t,this.data.stopy=this.verticalPos},getVerticalPos:function(){return this.verticalPos},getBounds:function(){return this.data}};var c=function(t,e,n,a,s){var o=i.getNoteRect();o.x=e,o.y=n,o.width=s||u.width,o["class"]="note";var c=t.append("g"),l=i.drawRect(c,o),h=i.getTextObj();h.x=e-4,h.y=n-13,h.textMargin=u.noteMargin,h.dy="1em",h.text=a.message,h["class"]="noteText";var d=i.drawText(c,h,o.width-u.noteMargin),f=d[0][0].getBBox().height;!s&&f>u.width?(d.remove(),c=t.append("g"),d=i.drawText(c,h,2*o.width-u.noteMargin),f=d[0][0].getBBox().height,l.attr("width",2*o.width),r.bounds.insert(e,n,e+2*o.width,n+2*u.noteMargin+f)):r.bounds.insert(e,n,e+o.width,n+2*u.noteMargin+f),l.attr("height",f+2*u.noteMargin),r.bounds.bumpVerticalPos(f+2*u.noteMargin)},l=function(t,e,i,a,s){var o,c=t.append("g"),l=e+(i-e)/2,h=c.append("text").attr("x",l).attr("y",a-7).style("text-anchor","middle").attr("class","messageText").text(s.message);o="undefined"!=typeof h[0][0].getBBox?h[0][0].getBBox().width:h[0][0].getBoundingClientRect();var d;if(e===i){d=c.append("path").attr("d","M "+e+","+a+" C "+(e+60)+","+(a-10)+" "+(e+60)+","+(a+30)+" "+e+","+(a+20)),r.bounds.bumpVerticalPos(30);var f=Math.max(o/2,100);r.bounds.insert(e-f,r.bounds.getVerticalPos()-10,i+f,r.bounds.getVerticalPos())}else d=c.append("line"),d.attr("x1",e),d.attr("y1",a),d.attr("x2",i),d.attr("y2",a),r.bounds.insert(e,r.bounds.getVerticalPos()-10,i,r.bounds.getVerticalPos());s.type===n.yy.LINETYPE.DOTTED||s.type===n.yy.LINETYPE.DOTTED_CROSS||s.type===n.yy.LINETYPE.DOTTED_OPEN?(d.style("stroke-dasharray","3, 3"),d.attr("class","messageLine1")):d.attr("class","messageLine0");var 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}\n"));if(""!==n||""!==h||""!==d){var p=document.createElement("style");p.setAttribute("type","text/css"),p.setAttribute("title","mermaid-svg-internal-css"),p.innerHTML="/* */\n",t.insertBefore(p,t.firstChild)}};r.cloneCssStyles=s},{"./logger":126}]},{},[127])(127)}); diff --git a/docs/authors.html b/docs/authors.html new file mode 100644 index 0000000..2e38e4c --- /dev/null +++ b/docs/authors.html @@ -0,0 +1,100 @@ + + + + + + + + +Authors • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

Authors

+
+ +
    +
  • +

    Devin Pastoor. Author, maintainer. +

    +
    • +
+ +
+ +
+ + +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/index.html b/docs/index.html new file mode 100644 index 0000000..41a03c5 --- /dev/null +++ b/docs/index.html @@ -0,0 +1,86 @@ + + + + + + + +data sets for pharmacometric analysis and visualization • PKPDdatasets + + + + + + +
+
+ + + +
+
+ + + + +
+
+

+ README

+

datasets for PKPD style usage

+
+
+
+ + + +
+ + +
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/jquery.sticky-kit.min.js b/docs/jquery.sticky-kit.min.js new file mode 100644 index 0000000..e2a3c6d --- /dev/null +++ b/docs/jquery.sticky-kit.min.js @@ -0,0 +1,9 @@ +/* + Sticky-kit v1.1.2 | WTFPL | Leaf Corcoran 2015 | http://leafo.net +*/ +(function(){var b,f;b=this.jQuery||window.jQuery;f=b(window);b.fn.stick_in_parent=function(d){var A,w,J,n,B,K,p,q,k,E,t;null==d&&(d={});t=d.sticky_class;B=d.inner_scrolling;E=d.recalc_every;k=d.parent;q=d.offset_top;p=d.spacer;w=d.bottoming;null==q&&(q=0);null==k&&(k=void 0);null==B&&(B=!0);null==t&&(t="is_stuck");A=b(document);null==w&&(w=!0);J=function(a,d,n,C,F,u,r,G){var v,H,m,D,I,c,g,x,y,z,h,l;if(!a.data("sticky_kit")){a.data("sticky_kit",!0);I=A.height();g=a.parent();null!=k&&(g=g.closest(k)); +if(!g.length)throw"failed to find stick parent";v=m=!1;(h=null!=p?p&&a.closest(p):b("
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+
+ + + +
+ +
+
+
+

PKPDdatasets

+
+ + +

PKPDdatasets

+ + + + +
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/aht_trial1.html b/docs/reference/aht_trial1.html new file mode 100644 index 0000000..0045250 --- /dev/null +++ b/docs/reference/aht_trial1.html @@ -0,0 +1,136 @@ + + + + + + + + +One-compartment pharmacokinetic data given single oral dose aht_trial1 • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

One-compartment pharmacokinetic data given single oral dose

+
+ + +

A dataset containing dose, plasma concentration and time data, as well as + demographic data of Age, Weight, Gender, and Race for each individual

+ + + 
data(aht_trial1)
+ +

Format

+ +

A data frame with 4300 rows and 9 variables

+ +

Details

+ +

    +
  • ID. Numerical ID (1--50) +
    • +
  • AGE. Time in hours (0--24) +
    • +
  • WEIGHT Amount of drug given, time dependent, in milligrams +
    • +
  • SCREATININE Plasma concentration in mg/L +
    • +
  • AGE Age in years +
    • +
  • WEIGHT. Weight in kg +
    • +
  • GENDER. Male or Female gender identification +
    • +
  • RACE. Ethnicity +
    • +
  • DOSE. Dose given to each individual in milligrams +
    • +

+ + +
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/aht_trial2.html b/docs/reference/aht_trial2.html new file mode 100644 index 0000000..e361adb --- /dev/null +++ b/docs/reference/aht_trial2.html @@ -0,0 +1,144 @@ + + + + + + + + +Anti-hypertensive trial clinical endpoint data aht_trial2 • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

Anti-hypertensive trial clinical endpoint data

+
+ + +

AHT trial data set: Randomized, placebo controlled, Double-blind, parallel study; +Subjects randomized to Placebo and AHT in the ratio 1:1; Dose of AHT studied : 5mg +Primary endpoint: Change from baseline blood pressure (systolic and diastolic) measured at 8 weeks. +Details of the Data Column: ID=Subject ID, Age: Age(years), Weight : Weight(Kg), SCreatinine: Serum Creatinine(mg/dl), +SerumALT: Serum Alanine aminotransferase(IU/L), DelDBP: Change from baseline diastolic blood pressure(mm Hg), +DELSBP: Change from baseline systolic blood pressure (mm Hg), TRT: Treatment, Dose: Dose (microgram,g)

+ + + 
data(aht_trial2)
+ +

Format

+ +

A data frame with 100 rows and 11 variables

+ +

Details

+ +

    +
  • ID. Numerical ID (1--100) +
    • +
  • AGE. Age in Years +
    • +
  • WEIGHT Weight in Kg +
    • +
  • SCREATININE. Serum creatinine in mg/dl +
    • +
  • SERUMALT. Serum Alanine Aminotransferase in IU/L +
    • +
  • GENDER. Male or Female gender identification +
    • +
  • RACE. Ethnicity +
    • +
  • DELDBP. Change from baseline in Diastolic blood pressure, mmHg +
    • +
  • DELSBP. Change from baseline in Systolic blood pressure, mmHg +
    • +
  • TRT. Treatment indicator: Placebo and AHT group +
    • +
  • DOSE. Dose of AHT in ug +
    • +

+ + +
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/dapa_IV_oral.html b/docs/reference/dapa_IV_oral.html new file mode 100644 index 0000000..1bb6b2b --- /dev/null +++ b/docs/reference/dapa_IV_oral.html @@ -0,0 +1,134 @@ + + + + + + + + +IV and oral pharmacokinetic data for daptomycin dapa_IV_oral • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

IV and oral pharmacokinetic data for daptomycin

+
+ + +

A dataset containing simulated dapagliflozin PK. A single IV dose followed by 3 escalating oral doses +

    +
  • ID. Numerical ID (1-24) +
    • +
  • TIME. Nominal Time after first dose (hrs) +
    • +
  • TAD. Time After Dose (hrs) +
    • +
  • COBS. Observed Concentration (ug/L) +
    • +
  • AMT_IV. IV dose amount when given (ug) +
    • +
  • AMT_ORAL. Oral dose amount when given (ug) +
    • +
  • OCC. Occasion, associated with each dosing event +
    • +
  • AGE. Age (years) +
    • +
  • WEIGHT Weight (kg) +
    • +
  • GENDER. Gender flag (female=1, male=0) +
    • +
  • FORMULATION Formulation associated with dose (IV or oral) +
    • +

+ + + 
data(dapa_IV_oral)
+ +

Format

+ +

A data frame with 1536 rows and 11 variables

+ + +
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/index.html b/docs/reference/index.html new file mode 100644 index 0000000..b9f560d --- /dev/null +++ b/docs/reference/index.html @@ -0,0 +1,150 @@ + + + + + + + + +Function reference • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

Function reference

+

version 0.1.0

+
+ +
+

All functions

+

+ + +

One-compartment pharmacokinetic data given single oral dose

+ + +

Anti-hypertensive trial clinical endpoint data

+ + +

IV and oral pharmacokinetic data for daptomycin

+ + +

List datasets available in PKPDdatasets package

+ + +

Simulated anti-inflammatory pain trial

+ + +

PKPDdatasets

+ + +

Print datasets available in PKPDdatasets package

+ + +

One-compartment single IV bolus PKPD

+ + +

One-compartment pharmacokinetic data given single oral dose

+ + +
+
+ + +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/list_datasets.html b/docs/reference/list_datasets.html new file mode 100644 index 0000000..5f899fb --- /dev/null +++ b/docs/reference/list_datasets.html @@ -0,0 +1,108 @@ + + + + + + + + +List datasets available in PKPDdatasets package list_datasets • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

List datasets available in PKPDdatasets package

+
+ + +

List datasets available in PKPDdatasets package

+ + + 
list_datasets()
+ + +

Examples

+ 
list_datasets()
+
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/pain_relief.html b/docs/reference/pain_relief.html new file mode 100644 index 0000000..ed066d5 --- /dev/null +++ b/docs/reference/pain_relief.html @@ -0,0 +1,138 @@ + + + + + + + + +Simulated anti-inflammatory pain trial pain_relief • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

Simulated anti-inflammatory pain trial

+
+ + +

CTM_Nopain is a novel anti-inflammatory agent under preliminary investigation. +A dose-ranging trial was conducted comparing placebo with 3 doses of CTM_Nopain (5mg, 20mg and 80 mg QD). +The maximum tolerated dose is 160 mg per day. +Plasma concentrations (mg/L) of the drug were measured at 0, 0.5, 1, 1.5, 2, 2.5, 3-8 hours. +Pain score (0=no pain, 1=mild, 2=moderate, 3=severe) were obtained at time points when plasma concentration was collected. +A pain score of 2 or more is considered as no pain relief. +The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) +with direct PD effect (Emax model).

+ + + 
data(pain_relief)
+ +

Format

+ +

A data frame with 1920 rows and 7 variables

+ +

Details

+ +

    +
  • ARM Factor with 4 levels +
    • +
  • ID. Numerical ID (1-160) +
    • +
  • TIME Time in hours +
    • +
  • CONC Concentration (mg/L) +
    • +
  • PAINRELIEF 0 (no relief) or 1 (relief) +
    • +
  • PAINSCORE categorical pain score +
    • +
  • DOSE Dose Given +
    • +

+ + +
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/print_datasets.html b/docs/reference/print_datasets.html new file mode 100644 index 0000000..9b1080f --- /dev/null +++ b/docs/reference/print_datasets.html @@ -0,0 +1,108 @@ + + + + + + + + +Print datasets available in PKPDdatasets package print_datasets • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

Print datasets available in PKPDdatasets package

+
+ + +

Print datasets available in PKPDdatasets package

+ + + 
print_datasets()
+ + +

Examples

+ 
print_datasets()
+
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/sd_iv_rich_pkpd.html b/docs/reference/sd_iv_rich_pkpd.html new file mode 100644 index 0000000..d2cdfba --- /dev/null +++ b/docs/reference/sd_iv_rich_pkpd.html @@ -0,0 +1,166 @@ + + + + + + + + +One-compartment single IV bolus PKPD sd_iv_rich_pkpd • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

One-compartment single IV bolus PKPD

+
+ + +

A dataset containing simulated PKPD data. A single IV bolus dose was given and rich pharmacokinetic +and pharmacodynamic measurements were taken. Demographic data of Age, Weight, Gender, and Race were collected.

+ + + 
data(sd_iv_rich_pkpd)
+ +

Format

+ +

A data frame with 480 rows and 10 variables

+ +

Details

+ +

The model used is a one-compartment PK model with allometric model of weight on CL (exp 0.75) and volume (exp 1) +with direct PD effect (Emax model).

+

    +
  • ID. Numerical ID (1-100) +
    • +
  • TIME Time in hours (0-12) +
    • +
  • COBS. Plasma concentration in +
    • +
  • EOBS. +
    • +
  • WEIGHT. Weight in kg +
    • +
  • AGE. Age in years +
    • +
  • DOSE. Three dose levels: 1, 10, and 100 mg +
    • +
  • SEX. Male or Female gender identification +
    • +
  • RACE. AfricanAmerican, Caucasian, Others, and Asian races +
    • +
  • AMT. Amount of drug given, time dependent, in milligrams +
    • +

+

Parameters used to simulate data: + + + + + + + + + + + + + + + + + + +
+Parameter Mean
Variance (BSV) +CL (L/hr)
1 0.16 (40%)
+V (L) 10
0.09 (30%) +Residual error: Proportional
0 10%
+Emax 10
sd = 1.4 units +EC50 (mg/L)
2 0.09 (30%)

+ + +
+ +
+ +
+
+

Developed by Devin Pastoor.

+
+ +
+

Site built with pkgdown.

+
+ +
+
+ + + diff --git a/docs/reference/sd_oral_richpk.html b/docs/reference/sd_oral_richpk.html new file mode 100644 index 0000000..188d8dd --- /dev/null +++ b/docs/reference/sd_oral_richpk.html @@ -0,0 +1,136 @@ + + + + + + + + +One-compartment pharmacokinetic data given single oral dose sd_oral_richpk • PKPDdatasets + + + + + + + + + + + + + + + + + + + + + + + + +
+
+ + + +
+ +
+
+
+

One-compartment pharmacokinetic data given single oral dose

+
+ + +

A dataset containing dose, plasma concentration and time data, as well as + demographic data of Age, Weight, Gender, and Race for each individual

+ + + 
data(sd_oral_richpk)
+ +

Format

+ +

A data frame with 4300 rows and 9 variables

+ +

Details

+ +

    +
  • ID. Numerical ID (1--50) +
    • +
  • Time. Time in hours (0--24) +
    • +
  • Amt. Amount of drug given, time dependent, in milligrams +
    • +
  • Conc. Plasma concentration in mg/L +
    • +
  • Age. Age in years +
    • +
  • Weight. Weight in kg +
    • +
  • Gender. Male or Female gender identification +
    • +
  • Race. Ethnicity +
    • +
  • Dose. Dose given to each individual in milligrams +
    • +

+ + +
+ +
+ + +
+ + +