Running Conductor locally is not possible because of requirements

[Yu-jinKim]

Running Conductor locally is pretty important for development purposes and is why there is a requirements.txt file in the repo.
Additionally, the packages in resources/home/dnanexus/packages could probably use a refresher.

Using Python3.12.3, I keep getting this error: ModuleNotFoundError: No module named 'pkg_resources'
Proposed fix is a new requirements file:

argcomplete==3.6.3
attrs==25.4.0
awscrt==0.31.1
certifi==2026.1.4
charset-normalizer==3.4.4
coverage==7.13.4
crc32c==2.8
dictdiffer==0.9.0
dxpy==0.404.0
flatten-json==0.1.14
idna==3.11
iniconfig==2.3.0
Jinja2==3.1.6
MarkupSafe==3.0.3
numpy==2.4.2
packaging==26.0
pandas==3.0.0
pluggy==1.6.0
psutil==7.2.2
Pygments==2.19.2
pytest==9.0.2
pytest-cov==7.0.0
pytest-html==4.2.0
pytest-metadata==3.1.1
pytest-mock==3.15.1
pytest-subtests==0.15.0
python-dateutil==2.9.0.post0
requests==2.32.5
setuptools==82.0.0
six==1.17.0
urllib3==2.1.0
websocket-client==1.7.0

Unittests seem to handle the changes fine:

$ pytest resources/home/dnanexus/run_workflows/tests/
=========================================================== test session starts ============================================================
platform linux -- Python 3.12.3, pytest-9.0.2, pluggy-1.6.0
rootdir: /home/kimy/NHS/repos/eggd_conductor
plugins: metadata-3.1.1, html-4.2.0, mock-3.15.1, cov-7.0.0
collected 158 items                                                                                                                        

resources/home/dnanexus/run_workflows/tests/test_assay_handler.py ..........................                                         [ 16%]
resources/home/dnanexus/run_workflows/tests/test_demultiplexing.py .....                                                             [ 19%]
resources/home/dnanexus/run_workflows/tests/test_dx_utils.py ...........                                                             [ 26%]
resources/home/dnanexus/run_workflows/tests/test_manage_dict.py .................................................................... [ 69%]
..........................                                                                                                           [ 86%]
resources/home/dnanexus/run_workflows/tests/test_utils.py ......................                                                     [100%]

============================================================= warnings summary =============================================================
../../venvs/conductor/lib/python3.12/site-packages/dxpy/compat.py:22
  /home/kimy/NHS/venvs/conductor/lib/python3.12/site-packages/dxpy/compat.py:22: DeprecationWarning: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
    sys_encoding = locale.getdefaultlocale()[1] or "UTF-8"

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
====================================================== 158 passed, 1 warning in 4.62s ======================================================