what is tip.walk.files?

[wangzitiner]

Hello!

I'm trying my own data using the code on this website. But I didn't find "tip.walk.files" anywhere before it was used. Thus, my process stopped here. I want to know how to make this file. Could you please help me?

Process walks from cluster

Get list of walk files

tip.walk.files <- list.files(path = "walks/dm-8-tm-40-80/", pattern = ".rds", full.names = T)

Which tips were walked?

tips.walked <- setdiff(unique(object@group.ids$ZF6S-Cluster-Num), NA)

Run through each tip, load the walks, and process them into visitation frequency for that tip.

for (tip in tips.walked) {

Get the files for that tip

tip.files <- grep(paste0("walks-", tip, "-"), tip.walk.files, value=T)
if (length(tip.files) > 0) {
# Read the files into a list of lists, and do a non-recursive unlist to combine into one list.
these.walks <- unlist(lapply(tip.files, readRDS), recursive = F)
object <<- processRandomWalks(object, walks=these.walks, walks.name=tip, verbose=F)
}
}