diff --git a/Analyses/QuickStart/URD-QuickStart-AxialMesoderm.Rmd b/Analyses/QuickStart/URD-QuickStart-AxialMesoderm.Rmd index 3dedec9..0cd2ab9 100644 --- a/Analyses/QuickStart/URD-QuickStart-AxialMesoderm.Rmd +++ b/Analyses/QuickStart/URD-QuickStart-AxialMesoderm.Rmd @@ -270,8 +270,8 @@ We can then plot any metadata or gene expression on the dendrogram recovered by plotTree(axial.tree, "stage", title="Developmental Stage") plotTree(axial.tree, "GSC", title="GSC (early prechordal plate marker)") plotTree(axial.tree, "NOTO", title="NOTO (early notochord marker)") -plotTree(axial.tree, "HE1A", title="HE1A (prechordal plate differentiation marker") -plotTree(axial.tree, "COL8A1A", title="COL8A1A (notochord differentiation marker") +plotTree(axial.tree, "HE1A", title="HE1A (prechordal plate differentiation marker)") +plotTree(axial.tree, "COL8A1A", title="COL8A1A (notochord differentiation marker)") ``` Additionally, we can refer back to the tSNE representation to see where the branchpoint