From 25dc5a5e7569e39c694785c0e64d880d8e6a708f Mon Sep 17 00:00:00 2001
From: jhudsl-robot <null>
Date: Fri, 6 Jun 2025 19:38:40 +0000
Subject: [PATCH 1/4] =?UTF-8?q?=F0=9F=94=84=20Synced=20local=20'.github/wo?=
 =?UTF-8?q?rkflows/'=20with=20remote=20'.github/workflows/'?=
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Content-Type: text/plain; charset=UTF-8
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release-renderAction
---
 .github/workflows/check-url-2.yml  | 121 +++++++++++++++++
 .github/workflows/check-url.yml    |  25 +++-
 .github/workflows/pull_request.yml | 210 +++++++++--------------------
 .github/workflows/render-all.yml   | 149 +++++++++-----------
 4 files changed, 272 insertions(+), 233 deletions(-)
 create mode 100644 .github/workflows/check-url-2.yml

diff --git a/.github/workflows/check-url-2.yml b/.github/workflows/check-url-2.yml
new file mode 100644
index 00000000..1ff59879
--- /dev/null
+++ b/.github/workflows/check-url-2.yml
@@ -0,0 +1,121 @@
+name: Periodic URL Check 2
+
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '0 0 1 * *'
+
+jobs:
+  set-up:
+    name: Load user automation choices
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+        with:
+          fetch-depth: 0
+
+        # Use the yaml-env-action action.
+      - name: Load environment from YAML
+        uses: doughepi/yaml-env-action@v1.0.0
+        with:
+            files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence.
+    outputs:
+      toggle_url_check_periodically: "${{ env.URL_CHECK_PERIODICALLY }}"
+
+  url-check:
+    name: Check URLs
+    needs: set-up
+    if: ${{needs.set-up.outputs.toggle_url_check_periodically == 'true'}}
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+
+    # Delete the branch if this has been run before
+    - name: Delete branch locally and remotely
+      run: git push origin --delete preview-spell-error || echo "No branch to delete"
+
+    # Make the branch fresh
+    - name: Make the branch fresh
+      run: |
+        git config --global --add safe.directory $GITHUB_WORKSPACE
+        git config --global user.name 'github-actions[bot]'
+        git config --global user.email 'github-actions[bot]@users.noreply.github.com'
+
+        echo branch doesnt exist
+        git checkout -b preview-spell-error || echo branch exists
+        git push --set-upstream origin preview-spell-error || echo echo branch exists remotely
+      shell: bash
+
+    - name: Run the check
+      uses: ottrproject/ottr-reports@main
+      id: check_results
+      continue-on-error: true
+      with:
+        check_spelling: false
+        spelling_error_min: 1
+        check_urls: true
+        url_error_min: 1
+        check_quiz_form: false
+        quiz_error_min: 1
+        sort_dictionary: false
+
+    - name: Declare file path and time
+      id: check-report
+      run: |
+        error_num=$(cat check_reports/url_checks.tsv | wc -l)
+        error_num="$((error_num-1))"
+        echo "error_num=$error_num" >> $GITHUB_OUTPUT
+        echo "error_url=https://github.com/${GITHUB_REPOSITORY}/blob/preview-spell-error/check_reports/url_checks.tsv" >> $GITHUB_OUTPUT
+      shell: bash
+
+    - name: Stop if failure
+      if: steps.check_results.outcome == 'failure'
+      run: exit 1
+
+    - name: Print out error variables
+      run: |
+        echo ${{ steps.check-report.outputs.error_url }}
+        echo ${{ steps.check-report.outputs.error_num }}
+
+      # Commit file
+    - name: Commit tocless bookdown files
+      if: ${{ steps.check-report.outputs.error_num >= 1 }}
+      env:
+        GH_PAT: ${{ secrets.GH_PAT }}
+      run: |
+        git add --force check_reports/url_checks.tsv
+        git commit -m 'Add spell check file' || echo "No changes to commit"
+        git push --set-upstream origin preview-spell-error || echo echo branch exists remotely
+
+    - name: Find issues
+      id: find-issue
+      env:
+        GH_PAT: ${{ secrets.GH_PAT }}
+      run: |
+        echo "$GITHUB_REPOSITORY"
+        curl -o find_issue.R https://raw.githubusercontent.com/ottrproject/ottr-reports/main/scripts/find_issue.R
+        issue_exists=$(Rscript --vanilla find_issue.R --repo $GITHUB_REPOSITORY --git_pat $GH_PAT)
+        echo URL issue exists: $issue_exists
+        echo "issue_existence=$issue_exists" >> $GITHUB_OUTPUT
+
+    - name: If too many URL errors, then make an issue
+      if: ${{ steps.check-report.outputs.error_num >= 1 && steps.find-issue.outputs.issue_existence == 0}}
+      uses: JasonEtco/create-an-issue@v2
+      with:
+        filename: .github/ISSUE_TEMPLATE/url-error.md
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        FILE_URL: ${{ steps.check-report.outputs.error_url }}
+        ERROR_NUM: ${{ steps.check-report.outputs.error_num }}
+
+    - name: If no URL errors than delete the branch we made
+      if: ${{ steps.check-report.outputs.error_num < 1 }}
+      run: |
+        git config --system --add safe.directory "$GITHUB_WORKSPACE"
+        git push origin --delete preview-spell-error || echo "No branch to delete"
diff --git a/.github/workflows/check-url.yml b/.github/workflows/check-url.yml
index a4370498..6cfef1a6 100644
--- a/.github/workflows/check-url.yml
+++ b/.github/workflows/check-url.yml
@@ -26,7 +26,7 @@ jobs:
   url-check:
     name: Check URLs
     needs: set-up
-    if: ${{needs.set-up.outputs.toggle_url_check_periodically == 'yes'}}
+    if: ${{needs.set-up.outputs.toggle_url_check_periodically == 'true'}}
     runs-on: ubuntu-latest
     container:
       image: jhudsl/base_ottr:main
@@ -54,12 +54,17 @@ jobs:
       shell: bash
 
     - name: Run the check
-      uses: jhudsl/ottr-reports@main
+      uses: ottrproject/ottr-reports@main
       id: check_results
       continue-on-error: true
       with:
-        check_type: urls
-        error_min: 1
+        check_spelling: false
+        spelling_error_min: 1
+        check_urls: true
+        url_error_min: 1
+        check_quiz_form: false
+        quiz_error_min: 1
+        sort_dictionary: false
 
     - name: Declare file path and time
       id: check-report
@@ -79,13 +84,23 @@ jobs:
         echo ${{ steps.check-report.outputs.error_url }}
         echo ${{ steps.check-report.outputs.error_num }}
 
+      # Commit file
+    - name: Commit tocless bookdown files
+      if: ${{ steps.check-report.outputs.error_num >= 1 }}
+      env:
+        GH_PAT: ${{ secrets.GH_PAT }}
+      run: |
+        git add --force check_reports/url_checks.tsv
+        git commit -m 'Add spell check file' || echo "No changes to commit"
+        git push --set-upstream origin preview-spell-error || echo echo branch exists remotely
+
     - name: Find issues
       id: find-issue
       env:
         GH_PAT: ${{ secrets.GH_PAT }}
       run: |
         echo "$GITHUB_REPOSITORY"
-        curl -o find_issue.R https://raw.githubusercontent.com/jhudsl/ottr-reports/main/scripts/find_issue.R
+        curl -o find_issue.R https://raw.githubusercontent.com/ottrproject/ottr-reports/main/scripts/find_issue.R
         issue_exists=$(Rscript --vanilla find_issue.R --repo $GITHUB_REPOSITORY --git_pat $GH_PAT)
         echo URL issue exists: $issue_exists
         echo "issue_existence=$issue_exists" >> $GITHUB_OUTPUT
diff --git a/.github/workflows/pull_request.yml b/.github/workflows/pull_request.yml
index 2e122ba7..9b3ece7a 100644
--- a/.github/workflows/pull_request.yml
+++ b/.github/workflows/pull_request.yml
@@ -1,5 +1,5 @@
 # Candace Savonen 2021
-# Updated Jan 2023
+# Updated May 2025
 
 name: Pull Request
 
@@ -17,7 +17,6 @@ jobs:
         uses: actions/checkout@v4
         with:
           fetch-depth: 0
-          token: ${{ secrets.GH_PAT }}
 
         # Use the yaml-env-action action.
       - name: Load environment from YAML
@@ -39,58 +38,58 @@ jobs:
           branch_name='preview-${{ github.event.pull_request.number }}'
           echo branch doesnt exist
           git checkout -b $branch_name || echo branch exists
-          git push --set-upstream origin $branch_name || echo echo branch exists remotely
+          git push --set-upstream origin $branch_name || echo branch exists remotely
         shell: bash
 
 
     outputs:
+      toggle_website: "${{ env.RENDER_WEBSITE }}"
       toggle_spell_check: "${{ env.SPELL_CHECK }}"
+      spell_error_min: "${{ env.SPELL_ERROR_MIN }}"
       toggle_style_code: "${{ env.STYLE_CODE }}"
       toggle_url_check: "${{ env.URL_CHECKER }}"
+      url_error_min: "${{ env.URL_ERROR_MIN }}"
       toggle_quiz_check: "${{ env.CHECK_QUIZZES }}"
+      quiz_error_min: "${{ env.QUIZ_ERROR_MIN }}"
+      toggle_md_linter: "${{ env.MARKDOWN_LINTER }}"
+      toggle_readability: "${{ env.READABILITY_REPORT }}"
       toggle_render_preview: "${{ env.RENDER_PREVIEW }}"
+      toggle_dictionary_sort: "${{ env.DICTIONARY_SORT }}"
       rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}"
 
 ########################## Make the error reports ##############################
-  spell-check:
-    name: Check spelling
+  ottr-reports:
+    name: Run Reports
     needs: yaml-check
-    if: ${{needs.yaml-check.outputs.toggle_spell_check == 'yes'}}
-    uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main
-    with:
-      check_type: spelling
-      error_min: 3
-      gh_pat: secrets.GH_PAT
-      branch_name: ${GITHUB_HEAD_REF}
-
-  url-check:
-    name: Check URLs
-    needs: yaml-check
-    if: ${{needs.yaml-check.outputs.toggle_url_check == 'yes'}}
-    uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main
-    with:
-      check_type: urls
-      error_min: 0
-      gh_pat: secrets.GH_PAT
-      branch_name: ${GITHUB_HEAD_REF}
-
-  quiz-check:
-    name: Check quiz formatting
-    if: ${{needs.yaml-check.outputs.toggle_quiz_check == 'yes'}}
-    needs: yaml-check
-    uses: jhudsl/ottr-reports/.github/workflows/report-maker.yml@main
-    with:
-      check_type: quiz_format
-      error_min: 0
-      gh_pat: secrets.GH_PAT
-      branch_name: ${GITHUB_HEAD_REF}
+    if: ${{needs.yaml-check.outputs.toggle_spell_check == 'true' || needs.yaml-check.outputs.toggle_url_check == 'true' || needs.yaml-check.outputs.toggle_quiz_check == 'true'}}
+    runs-on: ubuntu-latest
+    permissions:
+      pull-requests: write
+
+    steps:
+    - name: Checkout Actions Repository
+      uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - name: Run Reports
+      id: run-reports
+      uses: ottrproject/ottr-reports@main
+      with:
+        check_spelling: ${{needs.yaml-check.outputs.toggle_spell_check}}
+        spelling_error_min: ${{needs.yaml-check.outputs.spell_error_min}}
+        check_urls: ${{needs.yaml-check.outputs.toggle_url_check}}
+        url_error_min: ${{needs.yaml-check.outputs.url_error_min}}
+        check_quiz_form: ${{needs.yaml-check.outputs.toggle_quiz_check}}
+        quiz_error_min: ${{needs.yaml-check.outputs.quiz_error_min}}
+        sort_dictionary: ${{needs.yaml-check.outputs.toggle_dictionary_sort}}
 
 ############################# Style the code ###################################
   style-code:
     name: Style code
     needs: yaml-check
     runs-on: ubuntu-latest
-    if: ${{needs.yaml-check.outputs.toggle_style_code == 'yes'}}
+    if: ${{needs.yaml-check.outputs.toggle_style_code == 'true'}}
     container:
       image: jhudsl/base_ottr:main
 
@@ -101,130 +100,53 @@ jobs:
           fetch-depth: 0
 
       - name: Run styler
-        run: Rscript -e "styler::style_file(list.files(pattern = 'Rmd$', recursive = TRUE, full.names = TRUE));warnings()"
+        run: Rscript -e "styler::style_file(list.files(pattern = '(R|q)md$', recursive = FALSE, full.names = TRUE));warnings()"
 
       - name: Commit styled files
         run: |
           git config --system --add safe.directory "$GITHUB_WORKSPACE"
-          git add \*.Rmd
-          git commit -m 'Style Rmds' || echo "No changes to commit"
+          git add \*md
+          git commit -m 'Style *mds' || echo "No changes to commit"
           git push origin || echo "No changes to commit"
 
-############################# Render Preview ###################################
+############################# Readability Report ###################################
 
-  render-preview:
-    name: Render preview
+  readability-report:
+    name: Readability report
     needs: yaml-check
     runs-on: ubuntu-latest
-    container:
-      image: ${{needs.yaml-check.outputs.rendering_docker_image}}
-    if: ${{needs.yaml-check.outputs.toggle_render_preview == 'yes'}}
+    if: ${{needs.yaml-check.outputs.toggle_readability == 'true'}}
 
     steps:
-      - name: Checkout files
+      - name: Checkout repo
         uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
-      # Set up git checkout
-      - name: Set up git checkout
-        run: |
-          git config --global --add safe.directory $GITHUB_WORKSPACE
-          git config --global user.name 'github-actions[bot]'
-          git config --global user.email 'github-actions[bot]@users.noreply.github.com'
-
-          branch_name='preview-${{ github.event.pull_request.number }}'
-          git fetch --all
-          git checkout $branch_name
-          git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
-        shell: bash
-
-      # Run bookdown rendering
-      - name: Run bookdown render
-        id: bookdown
-        run: Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all')"
-
-      # Run TOC-less version
-      # Rendered content for Leanpub and Coursera is very similar.
-      # This job creates a shared scaffold for both.
-      - name: Run TOC-less version of render
-        id: tocless
-        run: Rscript -e "ottrpal::render_without_toc()"
-
-      # This checks on the steps before it and makes sure that they completed.
-      # If the renders didn't complete we don't want to commit the file changes
-      - name: Check on render steps
-        if: steps.bookdown.outcome != 'success' || steps.tocless.outcome != 'success'
-        run: |
-          echo Bookdown status ${{steps.bookdown.outcome}}
-          echo Toc-less status ${{steps.tocless.outcome}}
-          exit 1
-
-      - name: Website preview for download
-        run: zip website-preview.zip docs/* -r
-
-      # Commit the rendered bookdown files
-      - name: Commit rendered bookdown files to preview branch
-        id: commit
-        run: |
-          branch_name='preview-${{ github.event.pull_request.number }}'
-          git diff origin/main -- docs >/dev/null && changes=true || changes=false
-          echo "changes=$changes" >> $GITHUB_OUTPUT
-          git add . --force
-          git commit -m 'Render preview' || echo "No changes to commit"
-          git pull --rebase --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours
-          git push --force || echo "No changes to commit"
-        shell: bash
-
-      - name: Find Comment
-        uses: peter-evans/find-comment@v2
-        id: fc
+      - name: Readability report
+        uses: Rebilly/lexi@v2
         with:
-          issue-number: ${{ github.event.pull_request.number }}
-          comment-author: 'github-actions[bot]'
-          body-includes: latest commit
+          github-token: ${{ secrets.GH_PAT }}
+          glob: '**/*.md'
 
-      - name: Build components of the comment
-        id: build-components
-        run: |
-          course_name=$(head -n 1 _bookdown.yml | cut -d'"' -f 2| tr " " "-")
-          bookdown_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/docs/index.html")
-          tocless_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/docs/no_toc/index.html")
-          docx_link=$(echo "https://github.com/$GITHUB_REPOSITORY/raw/preview-${{ github.event.pull_request.number }}/docs/$course_name.docx")
-          zip_link=$(echo "https://github.com/$GITHUB_REPOSITORY/raw/preview-${{ github.event.pull_request.number }}/website-preview.zip")
-          echo "zip_link=$zip_link" >> $GITHUB_OUTPUT
-          echo "bookdown_link=$bookdown_link" >> $GITHUB_OUTPUT
-          echo "tocless_link=$tocless_link" >> $GITHUB_OUTPUT
-          echo "docx_link=$docx_link" >> $GITHUB_OUTPUT
-          echo "time=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
-          echo "commit_id=$GITHUB_SHA" >> $GITHUB_OUTPUT
-          echo ${{steps.commit.outputs.changes}}
-
-      - name: Create or update comment
-        if: steps.commit.outputs.changes == 'true'
-        uses: peter-evans/create-or-update-comment@v2
-        with:
-          comment-id: ${{ steps.fc.outputs.comment-id }}
-          issue-number: ${{ github.event.pull_request.number }}
-          body: |
-            Re-rendered previews from the latest commit:
-            - :eyes: Quick [preview of course website here](${{ steps.build-components.outputs.bookdown_link }}) \*
-            - :microscope: Comprehensive [download of the course website here](${{ steps.build-components.outputs.zip_link }})
-            - Download the [.docx file](${{ steps.build-components.outputs.docx_link }})
-
-            \* note not all html features will be properly displayed in the "quick preview" but it will give you a rough idea.
-
-            _Updated at ${{ steps.build-components.outputs.time }} with changes from the latest commit ${{ steps.build-components.outputs.commit_id }}_
-          edit-mode: replace
-
-      - name: Comment if no changes
-        if: steps.commit.outputs.changes == 'false'
-        uses: peter-evans/create-or-update-comment@v2
-        with:
-          comment-id: ${{ steps.fc.outputs.comment-id }}
-          issue-number: ${{ github.event.pull_request.number }}
-          body: |
-            The latest commit did not produce rendering changes.
+############################# Render Preview ###################################
+  render-preview:
+    name: Render preview
+    needs: yaml-check
+    runs-on: ubuntu-latest
+    if: ${{needs.yaml-check.outputs.toggle_render_preview == 'true'}}
+    permissions:
+      pull-requests: write
+      contents: write
 
-            _Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_
-          edit-mode: replace
+    steps:
+    - name: Checkout repo
+      uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - name: Run render
+      uses: ottrproject/ottr-preview@main
+      with:
+        toggle_website: ${{needs.yaml-check.outputs.toggle_website}}
+        docker_image: ${{needs.yaml-check.outputs.rendering_docker_image}}
diff --git a/.github/workflows/render-all.yml b/.github/workflows/render-all.yml
index d1fa46ae..e404e09b 100644
--- a/.github/workflows/render-all.yml
+++ b/.github/workflows/render-all.yml
@@ -1,5 +1,5 @@
-
-# Candace Savonen Apr 2021
+# Candace Savonen 2021
+# Updated April 2025
 
 name: Render all output courses
 
@@ -8,7 +8,8 @@ on:
   push:
     branches: [ main, staging ]
     paths:
-      - '**.Rmd'
+      - '*.qmd'
+      - '*.Rmd'
       - assets/*
       - quizzes/*
 
@@ -27,20 +28,17 @@ jobs:
         with:
             files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence.
     outputs:
-      toggle_bookdown: "${{ env.RENDER_BOOKDOWN }}"
+      toggle_website: "${{ env.RENDER_WEBSITE }}"
       toggle_coursera: "${{ env.RENDER_COURSERA }}"
       toggle_leanpub: "${{ env.RENDER_LEANPUB }}"
       make_book_txt: "${{ env.MAKE_BOOK_TXT }}"
       rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}"
       toggle_quiz_check: "${{ env.CHECK_QUIZZES }}"
 
-  render-bookdown:
-    name: Render bookdown
+  render-course:
+    name: Render course preview
     needs: yaml-check
     runs-on: ubuntu-latest
-    container:
-      image: ${{needs.yaml-check.outputs.rendering_docker_image}}
-    if: ${{needs.yaml-check.outputs.toggle_bookdown == 'yes'}}
 
     steps:
       - name: checkout
@@ -49,50 +47,22 @@ jobs:
           fetch-depth: 0
           token: ${{ secrets.GH_PAT }}
 
-      - name: Login as github actions bot
-        run: |
-          git config --global --add safe.directory $GITHUB_WORKSPACE
-          git config --global user.name 'github-actions[bot]'
-          git config --global user.email 'github-actions[bot]@users.noreply.github.com'
-
-      # We want a fresh run of the renders each time
-      - name: Delete old docs/*
-        run: rm -rf docs/*
-
-      # Run bookdown rendering
-      - name: Run bookdown render
-        id: bookdown
-        run: |
-          Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all');
-          file.copy(from = 'assets', to = 'docs/assets', overwrite = TRUE)"
-
-      # This checks on the steps before it and makes sure that they completed.
-      # If the renders didn't complete we don't want to commit the file changes
-      - name: Check on render step
-        if: steps.bookdown.outcome != 'success'
-        run: |
-          echo Bookdown status ${{steps.bookdown.outcome}}
-          exit 1
-
-      # Commit the rendered bookdown files
-      - name: Commit rendered bookdown files
-        env:
-          GH_PAT: ${{ secrets.GH_PAT }}
-        run: |
-          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
-          git fetch origin
-          git add --force docs/*
-          git commit -m 'Render bookdown' || echo "No changes to commit"
-          git pull --allow-unrelated-histories --strategy-option=ours
-          git push -u origin main  || echo "No changes to push"
+      - name: Run render
+        id: render
+        uses: ottrproject/ottr-preview@main
+        with:
+          toggle_website: ${{needs.yaml-check.outputs.toggle_website}}
+          preview: false
+          token: ${{ secrets.GH_PAT }}
+          docker_image: ${{needs.yaml-check.outputs.rendering_docker_image}}
 
   render-tocless:
     name: Render TOC-less version for Leanpub or Coursera
-    needs: [yaml-check, render-bookdown]
+    needs: [yaml-check, render-course]
     runs-on: ubuntu-latest
     container:
       image: ${{needs.yaml-check.outputs.rendering_docker_image}}
-    if: ${{needs.yaml-check.outputs.toggle_coursera == 'yes' || needs.yaml-check.outputs.toggle_leanpub == 'yes'}}
+    if: ${{needs.yaml-check.outputs.toggle_coursera == 'true' || needs.yaml-check.outputs.toggle_leanpub == 'true'}}
 
     steps:
       - name: checkout
@@ -106,32 +76,41 @@ jobs:
           git config --global --add safe.directory $GITHUB_WORKSPACE
           git config --global user.name 'github-actions[bot]'
           git config --global user.email 'github-actions[bot]@users.noreply.github.com'
+          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
+          git fetch origin
+          git pull --rebase --allow-unrelated-histories --strategy-option=ours
 
       # Rendered content for Leanpub and Coursera is very similar.
       # This job creates a shared scaffold for both.
-      - name: Run TOC-less version of render
-        id: tocless
+      - name: Run TOC-less version of render -- Rmd version
+        if: ${{needs.yaml-check.outputs.toggle_website == 'rmd' }}
+        id: tocless_rmd
         run: Rscript -e "ottrpal::render_without_toc()"
 
+      - name: Run TOC-less version of render -- quarto version
+        id: tocless_quarto
+        if: ${{needs.yaml-check.outputs.toggle_website == 'quarto' }}
+        run: |
+          Rscript -e "quarto::quarto_render('.', metadata = list(sidebar = F, toc = F),
+          quarto_args = c('--output-dir', 'docs/no_toc/'))"
+
       # Commit the TOC-less version files
       - name: Commit tocless bookdown files
         env:
           GH_PAT: ${{ secrets.GH_PAT }}
         run: |
-          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
-          git fetch origin
           git add --force docs/no_toc*
           git commit -m 'Render toc-less' || echo "No changes to commit"
-          git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours
-          git push -u origin main  || echo "No changes to push"
+          git status docs/no_toc*
+          git push --force -u origin main  || echo "No changes to push"
 
   render-leanpub:
     name: Finish Leanpub prep
     needs: [yaml-check, render-tocless]
     runs-on: ubuntu-latest
     container:
-      image: jhudsl/ottrpal:main
-    if: ${{needs.yaml-check.outputs.toggle_leanpub == 'yes'}}
+      image: jhudsl/base_ottr:dev
+    if: ${{needs.yaml-check.outputs.toggle_leanpub == 'true'}}
 
     steps:
       - name: checkout
@@ -145,6 +124,10 @@ jobs:
           git config --global --add safe.directory $GITHUB_WORKSPACE
           git config --global user.name 'github-actions[bot]'
           git config --global user.email 'github-actions[bot]@users.noreply.github.com'
+          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
+          git fetch origin
+          git pull --rebase --allow-unrelated-histories --strategy-option=ours
+          ls docs/no_toc
 
       # Create screenshots
       - name: Run the screenshot creation
@@ -153,11 +136,12 @@ jobs:
           rm -rf resources/chapt_screen_images
 
           # Make new screenshots
-          curl -o make_screenshots.R https://raw.githubusercontent.com/jhudsl/ottr-reports/main/scripts/make_screenshots.R
-          chapt_urls=$(Rscript --vanilla make_screenshots.R \
-            --git_pat ${{ secrets.GH_PAT }} \
-            --repo $GITHUB_REPOSITORY \
-            --output_dir resources/chapt_screen_images)
+          chapt_urls=$(Rscript -e " \
+           Sys.setenv(CHROMOTE_CHROME = '/usr/bin/vivaldi'); \
+           ottrpal::make_screenshots( \
+            token = '${{ secrets.GH_PAT }}', \
+            repo = '$GITHUB_REPOSITORY' )" \
+            )
 
       # We want a fresh run of the renders each time
       - name: Delete manuscript/
@@ -165,41 +149,38 @@ jobs:
           GH_PAT: ${{ secrets.GH_PAT }}
         run: |
           rm -rf manuscript/
-          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
-          git fetch origin
           git add .
           git commit -m 'Delete manuscript folder' || echo "No changes to commit"
-          git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours
           git push -u origin main || echo "No changes to push"
 
-      - name: Run ottrpal::bookdown_to_embed_leanpub
-        if: ${{ needs.yaml-check.outputs.toggle_quiz_check == 'no'}}
+      - name: Run ottrpal::bookdown_to_embed_leanpub -- No Quiz
+        if: ${{ needs.yaml-check.outputs.toggle_quiz_check != 'true'}}
         run: |
-          Rscript -e "ottrpal::bookdown_to_embed_leanpub(
+          Rscript -e "ottrpal::website_to_embed_leanpub(
             render = FALSE, \
             chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \
-            make_book_txt = as.logical('${{needs.yaml-check.outputs.make_book_txt}}'), \
+            make_book_txt = as.logical('${{needs.yaml-check.outputs.make_book_txt == 'true'}}'), \
             quiz_dir = NULL)"
 
-      - name: Run ottrpal::bookdown_to_embed_leanpub
-        if: ${{ needs.yaml-check.outputs.toggle_quiz_check == 'yes'}}
+      - name: Run ottrpal::bookdown_to_embed_leanpub -- with Quiz
+        if: ${{ needs.yaml-check.outputs.toggle_quiz_check == 'true'}}
         run: |
-          Rscript -e "ottrpal::bookdown_to_embed_leanpub(
+          Rscript -e "ottrpal::website_to_embed_leanpub(
             render = FALSE, \
             chapt_img_key = 'resources/chapt_screen_images/chapter_urls.tsv', \
-            make_book_txt = as.logical('${{needs.yaml-check.outputs.make_book_txt}}'))"
+            make_book_txt = as.logical('${{needs.yaml-check.outputs.make_book_txt == 'true'}}'))"
 
       # Commit the rendered Leanpub files
       - name: Commit rendered Leanpub files
         env:
           GH_PAT: ${{ secrets.GH_PAT }}
         run: |
-          mkdir -p manuscript
-          git add --force manuscript/*
-          git add --force resources/*
-          git add --force docs/*
+          git add --force manuscript/* || "No files to add"
+          git add --force resources/* || "No files to add"
+          git add --force docs/* || "No files to add"
           git commit -m 'Render Leanpub' || echo "No changes to commit"
-          git pull --allow-unrelated-histories --strategy-option=ours
+          git status docs/*
+          git pull --rebase --allow-unrelated-histories --strategy-option=ours --autostash
           git push --force --set-upstream origin main || echo "No changes to push"
 
   render-coursera:
@@ -208,7 +189,7 @@ jobs:
     runs-on: ubuntu-latest
     container:
       image: ${{needs.yaml-check.outputs.rendering_docker_image}}
-    if: ${{needs.yaml-check.outputs.toggle_coursera == 'yes'}}
+    if: ${{needs.yaml-check.outputs.toggle_coursera == 'true'}}
 
     steps:
       - name: checkout
@@ -222,27 +203,27 @@ jobs:
           git config --global --add safe.directory $GITHUB_WORKSPACE
           git config --global user.name 'github-actions[bot]'
           git config --global user.email 'github-actions[bot]@users.noreply.github.com'
+          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
+          git fetch origin
+          git pull --rebase --allow-unrelated-histories --strategy-option=ours
 
       # Run Coursera version
       - name: Convert Leanpub quizzes to Coursera
-        if: needs.yaml-check.outputs.toggle_leanpub == 'yes' && needs.yaml-check.outputs.toggle_quiz_check == 'yes'
+        if: needs.yaml-check.outputs.toggle_leanpub == 'true' && needs.yaml-check.outputs.toggle_quiz_check == 'true'
         id: coursera
         run: Rscript -e "ottrpal::convert_coursera_quizzes()"
 
-      # Commit the rendered bookdown files
+      # Commit the rendered files
       # Only commit coursera quizzes if the directory is present
       - name: Commit rendered Coursera files
         env:
           GH_PAT: ${{ secrets.GH_PAT }}
         run: |
-          git remote set-url origin https://${GH_PAT}@github.com/${GITHUB_REPOSITORY}
-          git fetch origin
           if [ -d 'coursera_quizzes' ]; then
             git add --force coursera_quizzes/*
           fi
-          git add --force manuscript/*
           git add --force resources/*
           git add --force docs/*
           git commit -m 'Render Coursera quizzes' || echo "No changes to commit"
-          git pull --rebase --allow-unrelated-histories --strategy-option=ours
-          git push -u origin main  || echo "No changes to push"
+          git status
+          git push --force -u origin main  || echo "No changes to push"

From d819559633b277a289eb1f9187a9cda3fa46dd35 Mon Sep 17 00:00:00 2001
From: jhudsl-robot <null>
Date: Fri, 6 Jun 2025 19:38:40 +0000
Subject: [PATCH 2/4] =?UTF-8?q?=F0=9F=94=84=20Synced=20local=20'assets/sty?=
 =?UTF-8?q?le.css'=20with=20remote=20'assets/style.css'?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

release-renderAction
---
 assets/style.css | 211 ++++++++++-------------------------------------
 1 file changed, 44 insertions(+), 167 deletions(-)
 mode change 100644 => 100755 assets/style.css

diff --git a/assets/style.css b/assets/style.css
old mode 100644
new mode 100755
index e7cc0f0a..587dd945
--- a/assets/style.css
+++ b/assets/style.css
@@ -1,7 +1,9 @@
-@import url('https://fonts.googleapis.com/css?family=Abril+Fatface|Arimo:400,400i,700,700i|Tinos:400,400i,700,700i&display=swap');
+/* variables are set in style_config_default.css */
+
+@import url('https://fonts.googleapis.com/css?family=Abril+Fatface|Karla:400,400i,700,700i|Lora:400,400i,700,700i&display=swap');
 
 p.caption {
-  color: #777;
+  color: var(--caption-color);
   margin-top: 10px;
 }
 p code {
@@ -43,18 +45,19 @@ pre code {
 /* ------------Links------------------ */
 
 .book .book-body .page-wrapper .page-inner section.normal a {
-  color: #00C1D5;
+  color: var(--link-color);
+  text-decoration: underline;
 }
 
 
 /*------------- Body and header text---------------- */
 
 .book.font-family-1 {
-  font-family: Arial, 'Arimo', sans-serif;
+  font-family: 'Karla', arial, sans-serif;
 }
 
 h1, h2, h3, h4 {
-  font-family: 'Times New Roman', 'Tinos', serif;
+  font-family: 'Lora', arial, sans-serif;
 }
 
 
@@ -69,16 +72,16 @@ h1, h2, h3, h4 {
 }
 
 .title {
-  font-family: 'Times New Roman', 'Tinos', serif;
+  font-family: 'Lora';
   font-size: 4em !important;
-  color: #1B365D;
+  color: var(--accent-color);
   margin-top: 0.275em !important;
   margin-bottom: 0.35em !important;
 }
 
 .subtitle {
-  font-family: 'Times New Roman', 'Tinos', serif;
-  color: #1B365D;
+  font-family: 'Lora';
+  color: var(--link-color);
 }
 
 
@@ -99,7 +102,7 @@ h1, h2, h3, h4 {
 */
 
 .section.level1 > p:first-of-type:first-letter { /*drop cap for first p beneath level 1 headers only within class .section*/
-  color: #1B365D;
+  color: var(--accent-color);
   float: left;
   font-family: 'Abril Fatface', serif;
   font-size: 7em;
@@ -131,18 +134,18 @@ h1, h2, h3, h4 {
 
 
 .book .book-summary {
-  background: white;
+  background: var(--background-color);
   border-right: none;
 }
 
 /*---color of links in TOC----*/
 
 .book .book-summary a {
-color: #1B365D
+color: var(--accent-color)
 }
 
 .summary{
-  font-family: Arial, 'Arimo', sans-serif;
+  font-family: 'Karla', sans-serif;
 }
 
 /* all TOC list items, basically */
@@ -152,38 +155,20 @@ color: #1B365D
   padding-bottom: 8px;
   padding-left: 15px;
   padding-right: 15px;
-  color: #1B365D;
+  color: var(--accent-color);
 }
 
 .summary a:hover {
-  color: #00C1D5 !important;
+  color: var(--highlight-color) !important;
 }
 
 .book .book-summary ul.summary li.active>a { /*active TOC links*/
-  color: #00C1D5 !important;
+  color: var(--link-color) !important;
   border-left: solid 4px;
-  border-color: #00C1D5;
+  border-color: var(--highlight-color);
   padding-left: 11px !important;
 }
 
-.trapezoid {
-  width: 132px;
-  text-align: center;
-  position: relative;
-    left: 10px;
-  border-right: 50px solid #ffb809;
-  border-bottom: 50px solid #dbdbdb;
-  border-left: 50px solid #b842ca;
-  box-sizing: content-box;
-}
-.trapezoid span {
-  position: absolute;
-  top: 8px;
-  bottom: 5px;
-  left: 5%;
-  color: #dbdbdb;
-}
-
 
 li.appendix span, li.part span { /* for TOC part names */
   margin-top: 1em;
@@ -264,18 +249,11 @@ li.appendix span, li.part span { /* for TOC part names */
   width: 50%;
 }
 
-.click_to_expand_block {
-    padding: 1em;
-    padding-top: .5em;
-    border: 1px grey;
-    background: #E8E8E8;
-    color: black;
-}
 
 /* Sidebar formating --------------------------------------------*/
 /* from r-pkgs.org*/
 
-div.notice, div.warning, div.github, div.dictionary, div.reflection, div.question, div.ethics{
+div.notice, div.warning, div.github, div.dictionary, div.reflection, div.wip {
   padding: 1em;
   margin: 1em 0;
   padding-left: 100px;
@@ -283,162 +261,61 @@ div.notice, div.warning, div.github, div.dictionary, div.reflection, div.questio
   background-repeat: no-repeat;
 }
 
- div.motivations, div.question_box, div.data, div.money, div.plan, div.submit{
-  padding: 1em;
-  padding-left: 100px;
-  min-height: 55px;
-  background-repeat: no-repeat;
-}
-
-div.motivations{
-  background-size: 70px;
-  background-position: 15px center;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/motivations.png");
-  display:flex;
-  align-items:center;
-}
-
-div.question_box{
-  background-size: 70px;
-  background-position: 15px center;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/question_box.png");
-  display:flex;
-  align-items:center;
-}
-
-div.data{
-  background-size: 70px;
-  background-position: 15px center;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/data.png");
-  display:flex;
-  align-items:center;
-}
-
-div.money{
-  background-size: 70px;
-  background-position: 15px center;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/money.png");
-  display:flex;
-  align-items:center;
-}
-
-div.plan{
-  background-size: 70px;
-  background-position: 15px center;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/plan.png");
-  display:flex;
-  align-items:center;
-}
-
-div.submit{
-  background-size: 70px;
-  background-position: 15px center;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/submit.png");
-  display:flex;
-  align-items:center;
-}
-
-div.question{
-  background-size: 70px;
-  background-position: 15px center;
-  background-color: #e8ebee;
-  background-repeat: no-repeat;
-  background-image: url("../assets/box_images/question.png");
-  display:flex;
-  align-items:center;
-  border: 4px #00C1D5;
-  border-style: solid;
-  font-size: 20px;
-  font-weight: bold;
-}
-
-div.ethics{
-  background-size: 70px;
-  background-position: 15px center;
-  background-color: #e8ebee;
-  background-image: url("../assets/box_images/justice.png");
-  border: 4px #b842ca;
-  border-style: solid;
-}
-
-
 div.notice{
+  border: 4px var(--highlight-color);
+  border-style: solid;
   background-size: 70px;
   background-position: 15px center;
-  background-color: #e8ebee;
+  background-color: var(--callout-background-color);
   background-image: url("../assets/box_images/note.png");
-  border: 4px #00C1D5;
-  border-style: solid;
 }
 
+
 div.warning{
+  border: 4px #e0471c;
+  border-style: solid;
   background-size: 70px;
   background-position: 15px center;
-  background-color: #e8ebee;
+  background-color: var(--callout-background-color);
   background-image: url("../assets/box_images/warning.png");
-  border: 4px #e0471c;
-  border-style: solid;
 }
 
 div.github{
-
+  border: 4px #000000;
+  border-style: solid;
   background-size: 70px;
   background-position: 15px center;
-  background-color: #e8ebee;
+  background-color: var(--callout-background-color);
   background-image: url("../assets/box_images/github.png");
-  border: 4px #000000;
-  border-style: solid;
 }
 
-
 div.dictionary{
+  border: 4px var(--highlight-color);
+  border-style: solid;
   background-size: 70px;
   background-position: 15px center;
-  background-color: #e8ebee;
+  background-color: var(--callout-background-color);
   background-image: url("../assets/box_images/dictionary.png");
-  border: 4px black;
-  border-style: solid;
 }
 
-
-div.dictionary_long{
-  padding: 1em;
-  padding-top: 20px;
-  padding-left: 100px;
-  min-height: 180px;
-  background-size: 70px;
-  background-color: #e8ebee;
-  background-image: url("../assets/box_images/dictionary.png");
-  background-repeat: no-repeat;
-  background-position: top 70px left 20px;
-  border: 4px black;
-  border-style: solid;
-}
 div.reflection{
+  border: 4px var(--highlight-color);
+  border-style: solid;
   background-size: 90px;
   background-position: 15px center;
-  background-color: #e8ebee;
+  background-color: var(--callout-background-color);
   background-image: url("../assets/box_images/thinking_face.png");
-  border: 4px #00C1D5;
-  border-style: solid;
 }
 
-div.blackbox{
-  padding: 1em;
-  margin: 1em 0;
-  min-height: 120px;
+div.wip{
   border: 4px #000000;
   border-style: solid;
-  outline: 5px solid #ffb808;
+  background-size: 70px;
+  background-position: 15px center;
+  background-color: #f4d03f;
+  background-image: url("../assets/box_images/under_construction.png");
 }
 
-
 /* .book .book-body .page-wrapper .page-inner section.normal is needed
    to override the styles produced by gitbook, which are ridiculously
    overspecified. Goal of the selectors is to ensure internal "margins"
@@ -558,7 +435,7 @@ a.anchor:hover {
 /* Footer */
 
 .footer {
-  font-family: 'Times New Roman', 'Tinos', serif;
+  font-family: "Lora", serif;
   font-size: .85em;
-  color: #193a5c;
+  color: var(--accent-color);
 }

From 21f4deb1d898a1c06f9a18d5192a98c21b68eabf Mon Sep 17 00:00:00 2001
From: jhudsl-robot <null>
Date: Fri, 6 Jun 2025 19:38:40 +0000
Subject: [PATCH 3/4] =?UTF-8?q?=F0=9F=94=84=20Created=20local=20'assets/st?=
 =?UTF-8?q?yle=5Fconfig=5Fdefault.css'=20from=20remote=20'assets/style=5Fc?=
 =?UTF-8?q?onfig=5Fdefault.css'?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

release-renderAction
---
 assets/style_config_default.css | 8 ++++++++
 1 file changed, 8 insertions(+)
 create mode 100644 assets/style_config_default.css

diff --git a/assets/style_config_default.css b/assets/style_config_default.css
new file mode 100644
index 00000000..1c7f4bdd
--- /dev/null
+++ b/assets/style_config_default.css
@@ -0,0 +1,8 @@
+:root {
+    --link-color: #0b5b9d;
+    --accent-color: #012d72;   /* book title, first letter of chapter, toc text */
+    --highlight-color: #68ace5;   /* toc highlight, callout box borders */
+    --caption-color: #595959;
+    --background-color: white;
+    --callout-background-color: #e8ebee;
+  }
\ No newline at end of file

From 1d4e07164aa1b939b29714011960986566a91060 Mon Sep 17 00:00:00 2001
From: jhudsl-robot <null>
Date: Fri, 6 Jun 2025 19:38:40 +0000
Subject: [PATCH 4/4] =?UTF-8?q?=F0=9F=94=84=20Synced=20local=20'config=5Fa?=
 =?UTF-8?q?utomation.yml'=20with=20remote=20'config=5Fautomation.yml'?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

release-renderAction
---
 config_automation.yml | 36 ++++++++++++++++++++++++++----------
 1 file changed, 26 insertions(+), 10 deletions(-)

diff --git a/config_automation.yml b/config_automation.yml
index 12d9dd08..3c7941e6 100644
--- a/config_automation.yml
+++ b/config_automation.yml
@@ -1,23 +1,39 @@
 
+### Render preview of content with changes (Rmd's and md's are checked)
+render-preview: true
+
 ##### Checks run at pull request #####
 # Check quiz formatting
-check-quizzes: no
+check-quizzes: false
+quiz_error_min: 0
 # Check that urls in the content are not broken
-url-checker: yes
-# Render preview of content with changes (Rmd's and md's are checked)
-render-preview: yes
+url-checker: true
+url_error_min: 0
 # Spell check Rmds and quizzes
-spell-check: yes
+spell-check: true
+spell_error_min: 0
+
+#### Other options
 # Style any R code
-style-code: yes
+style-code: true
+# Would you like your markdown files to be checked for formatting
+markdown-linter: true
+# Would you like a readability report on your markdowns?
+readability-report: true
 # Test build the docker image if any docker-relevant files have been changed
-docker-test: no
+docker-test: false
+# Should URLs be tested periodically?
+url-check-periodically: true
 
 ##### Renderings run upon merge to main branch #####
 # Rendering each platform's content
-render-bookdown: yes
-render-leanpub: yes
-render-coursera: no
+render-website: rmd
+render-leanpub: true
+render-coursera: true
+
+## Automate the creation of Book.txt file? yes/no
+## This is only relevant if render-leanpub is yes, otherwise it will be ignored
+make-book-txt: true
 
 # What docker image should be used for rendering?
 # The default is jhudsl/base_ottr:main