From 0621f2dde555d2ee2b4fa43241a77d63d88d5842 Mon Sep 17 00:00:00 2001
From: DylanAdlard <dylan.adlard@lmh.ox.ac.uk>
Date: Mon, 15 Dec 2025 12:57:07 +0200
Subject: [PATCH] minor

---
 .github/workflows/gui-build.yml | 7 ++++---
 README.md                       | 4 ++--
 2 files changed, 6 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/gui-build.yml b/.github/workflows/gui-build.yml
index f65beca..d38475c 100644
--- a/.github/workflows/gui-build.yml
+++ b/.github/workflows/gui-build.yml
@@ -22,8 +22,8 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install -r requirements.txt
-          python -m pip install pyinstaller matplotlib scipy
+          python -m pip install .
+          python -m pip install pyinstaller
 
       - name: Build macOS app
         run: |
@@ -61,7 +61,8 @@ jobs:
 
       - name: Install dependencies
         run: |
-          python -m pip install -r requirements.txt --upgrade pip setuptools wheel
+          python -m pip install --upgrade pip setuptools wheel
+          pip install .
           pip install pyinstaller
 
       - name: Build Windows exe
diff --git a/README.md b/README.md
index 718eca9..efc690e 100644
--- a/README.md
+++ b/README.md
@@ -65,7 +65,7 @@ or
 
 A single column/array of observed MIC values.
 
-#### Example (from `demo_files/input.txt`)
+#### Example (from `demo_files/censored.txt`)
 
 ```text
 MIC     observations
@@ -147,7 +147,7 @@ Once installed, you can call the CLI.
 Example using demo files:
 
 ```bash
-ecoffitter   --input demo_files/input.txt   --params demo_files/params.txt   --outfile demo_files/output.txt
+ecoffitter   --input demo_files/censored.txt   --params demo_files/params.txt   --outfile demo_files/output.txt
 ```
 
 Instead of using a parameter file, you can also specify parameters directly.