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Update README.md #23

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james-edward-hart Oct 28, 2024
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james-edward-hart Oct 28, 2024
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -332,8 +332,8 @@ export BCFTOOLS_PLUGINS="$HOME/bin"

Install the GRCh37 human genome reference, cytoband and chain file
```
wget -O- ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz | \
gzip -d > $HOME/GRCh37/human_g1k_v37.fasta
wget --continue 'ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz' -O $HOME/GRCh37/human_g1k_v37.fasta.gz
gzip -d $HOME/GRCh37/human_g1k_v37.fasta.gz
samtools faidx $HOME/GRCh37/human_g1k_v37.fasta
bwa index $HOME/GRCh37/human_g1k_v37.fasta
wget -P $HOME/GRCh37 http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/cytoBand.txt.gz
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