diff --git a/README.md b/README.md index 7ec3610d..16ad4982 100644 --- a/README.md +++ b/README.md @@ -51,6 +51,7 @@ For more information on different installation options, refer to the [documentation](https://gagneurlab-drop.readthedocs.io/en/latest/installation.html) ## What's new +Version 1.6.1 fixes issues due to the new way to import functions in txdbmaker and GenomeInfoDb with the new BioC release 3.22 and above. Version 1.6.0 contains a fix to a bug in the counting of the aberrant expression module ⚠️ . In addition, it contains a fix to the assignment of variants to genes in the MAE module. Please do not use v1.5.0. diff --git a/docs/source/conf.py b/docs/source/conf.py index 70efa72c..d73186a2 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -23,7 +23,7 @@ author = 'Michaela Müller' # The full version, including alpha/beta/rc tags -release_ = '1.6.0' +release_ = '1.6.1' diff --git a/drop/cli.py b/drop/cli.py index 6e3d4219..3d61406b 100644 --- a/drop/cli.py +++ b/drop/cli.py @@ -17,7 +17,7 @@ @click.group(invoke_without_command=True) @click_log.simple_verbosity_option(logger) -@click.version_option("1.6.0", prog_name='drop') +@click.version_option('1.6.1',prog_name='drop') def main(): ctx = click.get_current_context() diff --git a/setup.cfg b/setup.cfg index e2046bfc..8097d37c 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,6 +1,6 @@ [bumpversion] -current_version = 1.6.0 +current_version = 1.6.1 commit = True [bumpversion:file:setup.py] diff --git a/setup.py b/setup.py index b4217231..ebc37967 100644 --- a/setup.py +++ b/setup.py @@ -12,7 +12,7 @@ 'pandas>=3.0', ] -extra_files = [] +extra_files: list[str] = [] for (path, directories, filenames) in os.walk('drop/'): directories[:] = [d for d in directories if not d.startswith('.')] filenames[:] = [f for f in filenames if not f.startswith('.') and not f.endswith('.Rproj')] @@ -21,7 +21,7 @@ setuptools.setup( name="drop", - version="1.6.0", + version="1.6.1", author="Vicente A. Yépez, Michaela Müller, Nicholas H. Smith, Ata Jadid Ahari, Daniela Klaproth-Andrade, Luise Schuller, Ines Scheller, Christian Mertes , Julien Gagneur ", author_email="yepez@in.tum.de", description="Detection of RNA Outlier Pipeline",