Skip to content

Is pulsar-check expected to work currently? #377

@hexylena

Description

@hexylena
INFO:pulsar.client.manager:Setting Pulsar client class to standard, non-caching variant.
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/t/script.py] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/dataset_0.dat] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/dataset_0_files/input_subdir/extra] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/metadata/12312231231231.dat] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/w/config.txt] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/m/metadata_test123] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/idx/seq/human_full_seqs] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/idx/bwa/human.fa.fai] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/idx/bwa/human.fa] (action_type: [transfer])
DEBUG:pulsar.client.client:Uploading path [/tmp/pulsar-check-client.grb4stz_/w/config.txt] (action_type: [message])
Traceback (most recent call last):
  File "/mnt/pulsar/venv/lib/python3.10/site-packages/pulsar/client/test/check.py", line 318, in run
    assert result_status["returncode"] == 4, f"Expected exit code of 4, got {result_status['returncode']} - {std_streams_debug}"
AssertionError: Expected exit code of 4, got 127 - actual stdout [], actual stderr [/mnt/pulsar/files/staging/123456/command.sh: line 112: python: command not found
]
Traceback (most recent call last):
  File "/mnt/pulsar/venv/bin/pulsar-check", line 8, in <module>
    sys.exit(main())
  File "/mnt/pulsar/venv/lib/python3.10/site-packages/pulsar/client/test/check.py", line 607, in main
    run(options)
  File "/mnt/pulsar/venv/lib/python3.10/site-packages/pulsar/client/test/check.py", line 318, in run
    assert result_status["returncode"] == 4, f"Expected exit code of 4, got {result_status['returncode']} - {std_streams_debug}"
AssertionError: Expected exit code of 4, got 127 - actual stdout [], actual stderr [/mnt/pulsar/files/staging/123456/command.sh: line 112: python: command not found
]

I keep seeing this and figured i'd report it in case it's useful. python3 would've worked, or if the venv was included on path since that includes a python

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions