From 17c65e9837a7d7a4eb4681c87515198398dfa918 Mon Sep 17 00:00:00 2001 From: Anton Nekrutenko Date: Fri, 4 Dec 2015 17:42:11 -0500 Subject: [PATCH] Moving taxonomy tools to legacy --- .../taxonomy/find_diag_hits/.shed.yml | 0 .../taxonomy/find_diag_hits/find_diag_hits.py | 0 .../taxonomy/find_diag_hits/find_diag_hits.xml | 0 .../find_diag_hits/test-data/find_diag_hits.tabular | 0 .../find_diag_hits/test-data/taxonomyGI.taxonomy | 0 .../taxonomy/find_diag_hits/tool_dependencies.xml | 0 .../taxonomy/gi2taxonomy/.shed.yml | 0 .../taxonomy/gi2taxonomy/gi2taxonomy.py | 0 .../taxonomy/gi2taxonomy/gi2taxonomy.xml | 0 .../gi2taxonomy/test-data/taxonomy2gi-input.tabular | 0 .../test-data/taxonomy2gi-output.tabular | 0 .../taxonomy/gi2taxonomy/tool_dependencies.xml | 0 .../taxonomy/kraken2tax/.shed.yml | 0 .../taxonomy/kraken2tax/kraken2tax.xml | 0 .../kraken2tax/test-data/kraken2tax-test1.txt | 0 .../taxonomy/kraken2tax/test-data/kraken2tax.txt | 0 .../kraken2tax/tool-data/ncbi_taxonomy.loc.sample | 0 .../kraken2tax/tool_data_table_conf.xml.sample | 0 .../taxonomy/kraken2tax/tool_dependencies.xml | 0 .../taxonomy/lca_wrapper/.shed.yml | 0 .../taxonomy/lca_wrapper/lca.py | 0 .../taxonomy/lca_wrapper/lca.xml | 0 .../lca_wrapper/test-data/lca_input.taxonomy | 0 .../lca_wrapper/test-data/lca_input2.taxonomy | 0 .../lca_wrapper/test-data/lca_input3.taxonomy | 0 .../lca_wrapper/test-data/lca_output.taxonomy | 0 .../lca_wrapper/test-data/lca_output2.taxonomy | 0 .../lca_wrapper/test-data/lca_output3.taxonomy | 0 .../taxonomy/lca_wrapper/tool_dependencies.xml | 0 .../taxonomy/poisson2test/.shed.yml | 0 .../taxonomy/poisson2test/poisson2test.py | 0 .../taxonomy/poisson2test/poisson2test.xml | 0 .../poisson2test/test-data/poisson2test1.tabular | 0 .../test-data/poisson2test1_out.tabular | 0 .../poisson2test/test-data/poisson2test2.tabular | 0 .../test-data/poisson2test2_out.tabular | 0 .../taxonomy/poisson2test/tool_dependencies.xml | 0 .../taxonomy/t2ps/.shed.yml | 0 {tool_collections => legacy}/taxonomy/t2ps/t2ps.tgz | Bin .../taxonomy/t2ps/t2ps_autoscale.png | Bin .../taxonomy/t2ps/t2ps_autoscale_tree.png | Bin .../taxonomy/t2ps/t2ps_heatmap.png | Bin .../taxonomy/t2ps/t2ps_ideal.png | Bin .../taxonomy/t2ps/t2ps_ideal_ssp.png | Bin .../taxonomy/t2ps/t2ps_missing_nodes.png | Bin .../taxonomy/t2ps/t2ps_node_label.png | Bin .../taxonomy/t2ps/t2ps_wrapper.py | 0 .../taxonomy/t2ps/t2ps_wrapper.xml | 0 .../taxonomy/t2ps/tool_dependencies.xml | 0 .../taxonomy/t2t_report/.shed.yml | 0 .../taxonomy/t2t_report/t2t_report.xml | 0 .../t2t_report/test-data/t2t_report.tabular | 0 .../t2t_report/test-data/taxonomyGI.taxonomy | 0 .../taxonomy/t2t_report/tool_dependencies.xml | 0 54 files changed, 0 insertions(+), 0 deletions(-) rename {tool_collections => legacy}/taxonomy/find_diag_hits/.shed.yml (100%) rename {tool_collections => legacy}/taxonomy/find_diag_hits/find_diag_hits.py (100%) rename {tool_collections => 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