From e71f8c851aeeacd7225c8dd2e7b23f238bb2401e Mon Sep 17 00:00:00 2001 From: darsoo Date: Wed, 30 Jul 2025 14:18:02 +0200 Subject: [PATCH 1/6] Update check.R --- R/check.R | 1 + 1 file changed, 1 insertion(+) diff --git a/R/check.R b/R/check.R index 2ce4119..2a66475 100644 --- a/R/check.R +++ b/R/check.R @@ -156,6 +156,7 @@ rcmd_check_with_notes <- function(pkgDir, `no-check-unit-tests` = TRUE, # unit tests are called in previous step `no-check-formatting` = TRUE, # follow gDR style guides `no-check-CRAN` = TRUE, # may cause random error in CI + `no-check-description` = TRUE, # to prevent missing `fnd` NOTE `no-check-version-num` = TRUE, `no-check-R-ver` = TRUE ) From e1aeff2b33f9746c7a64b47e61b76e2a93f6e05d Mon Sep 17 00:00:00 2001 From: darsoo Date: Wed, 30 Jul 2025 15:36:33 +0200 Subject: [PATCH 2/6] Update check.R --- R/check.R | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/R/check.R b/R/check.R index 2a66475..8c01291 100644 --- a/R/check.R +++ b/R/check.R @@ -251,7 +251,7 @@ checkPackage <- function(pkgName, if (!skip_pkgdown) { message("Pkgdown") - pkgdown::build_site( + pkgdown::build_reference( pkg = pkgDir, override = list(destination = tempfile()), preview = FALSE From 0534afe0be78463c98c2a204abf8799e8fdfcde6 Mon Sep 17 00:00:00 2001 From: darsoo Date: Thu, 31 Jul 2025 10:05:02 +0200 Subject: [PATCH 3/6] Update run_tests.R --- inst/scripts/run_tests.R | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/inst/scripts/run_tests.R b/inst/scripts/run_tests.R index eb5b2fb..182b428 100644 --- a/inst/scripts/run_tests.R +++ b/inst/scripts/run_tests.R @@ -7,6 +7,7 @@ LIB_DIR <- args[4] FAIL_ON <- args[5] BIOC_CHECK <- args[6] RUN_EXAMPLES <- as.logical(args[7]) +CHECK_VIGNETTES <- as.logical(args[8]) # Load libraries stopifnot(dir.exists(LIB_DIR)) @@ -25,5 +26,7 @@ gDRstyle::checkPackage( PKG_SUBDIR, FAIL_ON, BIOC_CHECK, - RUN_EXAMPLES + RUN_EXAMPLES, + CHECK_VIGNETTES, + CHECK_VIGNETTES ) From 3c943d9e833ef757ae3839b760d940b058d50f7e Mon Sep 17 00:00:00 2001 From: darsoo Date: Sun, 3 Aug 2025 22:58:19 +0200 Subject: [PATCH 4/6] Update DESCRIPTION --- DESCRIPTION | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index a406e81..52f618d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: gDRstyle Type: Package Title: A package with style requirements for the gDR suite -Version: 1.7.2 -Date: 2025-05-26 +Version: 1.7.3 +Date: 2025-08-03 Authors@R: c( person("Allison", "Vuong", role=c("aut")), person("Dariusz", "Scigocki", role=c("aut")), From 0d98d32cf21b22bd3145ba79b10419d98ee8eca3 Mon Sep 17 00:00:00 2001 From: darsoo Date: Mon, 4 Aug 2025 00:50:27 +0200 Subject: [PATCH 5/6] Update run_tests.R --- inst/scripts/run_tests.R | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/inst/scripts/run_tests.R b/inst/scripts/run_tests.R index 182b428..8f5de98 100644 --- a/inst/scripts/run_tests.R +++ b/inst/scripts/run_tests.R @@ -21,12 +21,12 @@ invisible( # Check package gDRstyle::checkPackage( - PKG_NAME, - REPO_DIR, - PKG_SUBDIR, - FAIL_ON, - BIOC_CHECK, - RUN_EXAMPLES, - CHECK_VIGNETTES, - CHECK_VIGNETTES + pkgName = PKG_NAME, + repoDir = REPO_DIR, + subdir = PKG_SUBDIR, + fail_on = FAIL_ON, + bioc_check = BIOC_CHECK, + run_examples = RUN_EXAMPLES, + build_vignettes = CHECK_VIGNETTES, + check_vignettes = CHECK_VIGNETTES ) From a9e73bd1e8a06c8418c76d7a734c2c150c3548e7 Mon Sep 17 00:00:00 2001 From: darsoo Date: Mon, 4 Aug 2025 08:17:05 +0200 Subject: [PATCH 6/6] Update NEWS.md --- NEWS.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/NEWS.md b/NEWS.md index 0221547..e8f1b47 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,6 @@ +## gDRstyle 1.7.3 - 2025-08-04 +* added support for skipping vignette building in `run_tests.sh` + ## gDRstyle 1.7.2 - 2025-05-26 * add check for `pkgdown` in the `checkPackage` function