From fc6fa072c986f0983af161244b3c713f07170481 Mon Sep 17 00:00:00 2001
From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com>
Date: Mon, 11 Aug 2025 06:48:28 +0000
Subject: [PATCH 1/3] Update dependency org.openapi.generator to v7.14.0

---
 gradle/libs.versions.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/gradle/libs.versions.toml b/gradle/libs.versions.toml
index c0408be5..345d50b0 100644
--- a/gradle/libs.versions.toml
+++ b/gradle/libs.versions.toml
@@ -1,7 +1,7 @@
 # https://docs.gradle.org/current/userguide/platforms.html#sub::toml-dependencies-format
 
 [versions]
-openapiGenerator = "7.13.0"
+openapiGenerator = "7.14.0"
 
 [plugins]
 openapi-generator = { id = "org.openapi.generator", version.ref = "openapiGenerator" }

From 52be2b1373cdd6b1554c3e8e3e954cc169bee145 Mon Sep 17 00:00:00 2001
From: Kunitsyn Oleg <oleg.kunitsyn@genestack.com>
Date: Mon, 11 Aug 2025 09:03:50 +0200
Subject: [PATCH 2/3] [ODM-12752] Improve dependencies in tasks

---
 build.gradle.kts | 31 ++++++++++++++++---------------
 1 file changed, 16 insertions(+), 15 deletions(-)

diff --git a/build.gradle.kts b/build.gradle.kts
index 1eced74f..a120dcbd 100644
--- a/build.gradle.kts
+++ b/build.gradle.kts
@@ -33,7 +33,21 @@ val sourceFileList = KotlinPath(sourceDirectory)
     .map { layout.projectDirectory.file("${sourceDirectory}/${it.name}") }
 
 tasks {
+    val downloadSpec by registering(DownloadSpecification::class) {
+        version.set(processorsControllerVersion)
+        registryUsername.set(System.getenv("NEXUS_USER"))
+        registryPassword.set(System.getenv("NEXUS_PASSWORD"))
+        releaseRegistryUrl.set(System.getenv("RAW_REGISTRY_RELEASES"))
+        snapshotRegistryUrl.set(System.getenv("RAW_REGISTRY_SNAPSHOTS"))
+        outputFile.set(layout.projectDirectory.file(processorsControllerFilePath))
+    }
+    val mergeSpecifications by registering(MergeSpecifications::class) {
+        dependsOn(downloadSpec)
+        inputFiles = sourceFileList
+        outputFile = layout.projectDirectory.file(mergedFilePath)
+    }
     val generateOdmApiPython by registering(GenerateTask::class) {
+        dependsOn(mergeSpecifications)
         generatorName.set("python")
         inputSpec.set(mergedFilePath)
         outputDir.set("$rootDir/generated/python")
@@ -47,6 +61,7 @@ tasks {
         )
     }
     val generateOdmApiR by registering(GenerateTask::class) {
+        dependsOn(mergeSpecifications)
         generatorName.set("r")
         inputSpec.set(mergedFilePath)
         outputDir.set("$rootDir/generated/r")
@@ -60,6 +75,7 @@ tasks {
         )
     }
     val generateOdmApiPostmanCollection by registering(GenerateTask::class) {
+        dependsOn(mergeSpecifications)
         generatorName.set("postman-collection")
         inputSpec.set(mergedFilePath)
         outputDir.set("$rootDir/generated/postman-collection")
@@ -72,22 +88,7 @@ tasks {
 //            "disallowAdditionalPropertiesIfNotPresent" to "true"
         )
     }
-    val downloadSpec by registering(DownloadSpecification::class) {
-        version.set(processorsControllerVersion)
-        registryUsername.set(System.getenv("NEXUS_USER"))
-        registryPassword.set(System.getenv("NEXUS_PASSWORD"))
-        releaseRegistryUrl.set(System.getenv("RAW_REGISTRY_RELEASES"))
-        snapshotRegistryUrl.set(System.getenv("RAW_REGISTRY_SNAPSHOTS"))
-        outputFile.set(layout.projectDirectory.file(processorsControllerFilePath))
-    }
-    val mergeSpecifications by registering(MergeSpecifications::class) {
-        dependsOn(downloadSpec)
-        inputFiles = sourceFileList
-        outputFile = layout.projectDirectory.file(mergedFilePath)
-    }
-
     val generateAll by registering(GradleBuild::class) {
-        dependsOn(mergeSpecifications)
         file("$rootDir/generated").deleteRecursively()
         tasks = listOf(
             generateOdmApiPython.name,

From 12713da0610c5c9b5870a93d4e810e56bea3a824 Mon Sep 17 00:00:00 2001
From: Kunitsyn Oleg <oleg.kunitsyn@genestack.com>
Date: Mon, 11 Aug 2025 09:40:45 +0200
Subject: [PATCH 3/3] [ODM-12752] Add workaround for library bump

---
 build.gradle.kts | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/build.gradle.kts b/build.gradle.kts
index a120dcbd..80d225e4 100644
--- a/build.gradle.kts
+++ b/build.gradle.kts
@@ -56,7 +56,11 @@ tasks {
         gitRepoId.set("openapi")
         nameMappings.set(mapOf("genestack:accession" to "genestackaccession"))
         configOptions = mapOf(
-            "packageVersion" to openApiVersion
+            "packageVersion" to openApiVersion,
+            // Workaround for https://github.com/OpenAPITools/openapi-generator/issues/21619
+            // The second version asks for license, which we can't provide due to unavailability of
+            // "licenseName" and "licenseUrl" fields in the specification for python generator.
+            "poetry1" to "true"
 //            "disallowAdditionalPropertiesIfNotPresent" to "true"
         )
     }