diff --git a/openapi/swagger/fs/usr/share/nginx/html/helper/data_model.png b/openapi/swagger/fs/usr/share/nginx/html/helper/data_model.png deleted file mode 100644 index 0ca8ac6d..00000000 Binary files a/openapi/swagger/fs/usr/share/nginx/html/helper/data_model.png and /dev/null differ diff --git a/openapi/swagger/fs/usr/share/nginx/html/helper/data_model.svg b/openapi/swagger/fs/usr/share/nginx/html/helper/data_model.svg new file mode 100644 index 00000000..74d42961 --- /dev/null +++ b/openapi/swagger/fs/usr/share/nginx/html/helper/data_model.svg @@ -0,0 +1,1257 @@ + + + + + + + + + + + + + + + + + + + + + +Metadata stored in relational database + + + + + + + +Study + + + + + + + +Samples + + + + + + + +Libraries/Preparations + + + + + + + +Measurements + + + + + + + +Omics Metadata + + + + + + + +Measurementsmetadata + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +Indexed data stored in columnar database + + + + + + + +Files copied to ODM S3 bucket + + + + + + + +Non-​indexed experiment data and its descriptione.g. supplementary files, reports, images, h5 filesDiseaseAgeSample IDSample_1Sample_25054diabetescancerAssay TypeRINmRNALibrary IDLibrary_1Library_29.28.5mRNA + + + + + + + +Context of experimente.g. aim, experimental design + + + + + + + +Biological attributese.g. tissue, disease, treatment + + + + + + + +(Optional) Sample preparation libraries + + + + + + + +Processed omics datae.g. tabular data or vcf, and its description e.g. assay type, normalisation, instrument + + + + + + + +Attachment + + + + + + + +Attachment + + + + + + + +Omics Metadata + + + + + + + +Attachmentmetadata + + + + + + + + + + + + + + + +Cells + + + + + + + + + + + + + + + +(Optional) For single-​cell data percent_mitoCell TypeCell IDCell_1Cell_2adipocyteNK0.3544981010.655132133Cell_1Cell_2Gene ID-1.7888Gene NamePRSS1SPINK1ENSG00000204983ENSG00000164266-0.5665-0.11810.3693 diff --git a/openapi/swagger/fs/usr/share/nginx/html/helper/index.html b/openapi/swagger/fs/usr/share/nginx/html/helper/index.html index 2f7b8e71..3693ff74 100644 --- a/openapi/swagger/fs/usr/share/nginx/html/helper/index.html +++ b/openapi/swagger/fs/usr/share/nginx/html/helper/index.html @@ -1,5 +1,5 @@