GCHP 14.5.0 execution failure with NetCDF file processing

[John-z1998]

Your name

YuanweiZhong

Your affiliation

Jinan university

What happened? What did you expect to happen?

When attempting to run GCHP 14.5.0 with MPI, the simulation terminates abruptly during processing of a NetCDF file.

What are the steps to reproduce the bug?

After compiling and setting up the run directory, when running GCHP as a batch job or interactively, the bug appears.

Please attach any relevant configuration and log files.

1.GCHP log file
gchp_log.txt

2.setCommonRunSettings.sh
setCommonRunSettings.txt

3.batch job run script
batchjob_script.txt

4.batch job log
batchjob_log.txt

5.gchp environment file
gchp_env.txt

What GCHP version were you using?

14.5.0

What environment were you running GCHP on?

Local cluster

What compiler and version were you using?

intel 2021.3.0

What MPI library and version were you using?

intelmpi 2021.3.0

Will you be addressing this bug yourself?

No

Additional information

No response

[lizziel]

Hi @John-z1998, here are few things to try. I am curious if one of these solves the isues.

1. Check whether the file OutputDir/GEOSChem.DefaultCollection.20190701_0000z.nc4 exists in your run directory. Let me know if it does and what its permissions are.
2. Try a new run with duration 1 hr and set both diagnostic duration and frequency to 1 hr in setCommonRunSettings.sh. Also specify memory in the run script as 90GB. Then run again (no need to recompile) and see if it still has the issue.

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[lizziel]

Hi @John-z1998, were you able to test out any of the suggestions?

[John-z1998]

Thank you very much for your advice, OutputDir/GEOSChem.DefaultCollection.20190701_0000z.nc4 exists, its permissions is - rw - r - r -, I now is testing.