This repository was archived by the owner on Oct 29, 2023. It is now read-only.
This repository was archived by the owner on Oct 29, 2023. It is now read-only.
Update ShardedBAMWriting to be compatible with parallel BAM reading. #214
Description
WriteBAMTransform used by ShardedBAMWriting assumes that it receives reads in order.
Add a group by and a sort operation so that input reads can be read from multiple BAM shards in parallel.