Extract splice junctions from long-read RNA-seq aligned bam

[Youpu-Chen]

Dear regtools team,

Thank you for developing this great tool!

I am using this tool to extract splice junctions from PacBio ISO-seq data, but the output from junction annotate missed a certain amount of splice junctions in long-read data,

So, I was wondering whether this tool could be applied to long-read data?

Hongpu,
Best regars.

[Youpu-Chen]

Hi there, now long-read based bam from minimap2 outputed ts instead of XS tag. Is there any update pipeline?