diff --git a/assembly_stats/canu.tsv b/assembly_stats/canu.tsv index 49a27b8..9240415 100644 --- a/assembly_stats/canu.tsv +++ b/assembly_stats/canu.tsv @@ -1,2 +1,2 @@ -Assembly # contigs (>= 0 bp) # contigs (>= 1000 bp) # contigs (>= 5000 bp) # contigs (>= 10000 bp) # contigs (>= 25000 bp) # contigs (>= 50000 bp) Total length (>= 0 bp) Total length (>= 1000 bp) Total length (>= 5000 bp) Total length (>= 10000 bp) Total length (>= 25000 bp) Total length (>= 50000 bp) # contigs Largest contig Total length Estimated reference length GC (%) N50 NG50 N75 NG75 L50 LG50 L75 LG75 # N's per 100 kbp -Canu 10 10 10 5 2 2 189520 189520 189520 145564 105666 105666 10 55538 189520 229883 43.81 50128 14962 10429 8915 2 3 5 8 0.00 +Assembly # contigs (>= 0 bp) # contigs (>= 1000 bp) # contigs (>= 5000 bp) # contigs (>= 10000 bp) # contigs (>= 25000 bp) # contigs (>= 50000 bp) Total length (>= 0 bp) Total length (>= 1000 bp) Total length (>= 5000 bp) Total length (>= 10000 bp) Total length (>= 25000 bp) Total length (>= 50000 bp) # contigs Largest contig Total length Reference length GC (%) Reference GC (%) N50 NG50 N75 NG75 L50 LG50 L75 LG75 # misassemblies # misassembled contigs Misassembled contigs length # local misassemblies # scaffold gap size misassemblies # unaligned mis. contigs # unaligned contigs Unaligned length Genome fraction (%) Duplication ratio # N's per 100 kbp # mismatches per 100 kbp # indels per 100 kbp Largest alignment Total aligned length NA50 NGA50 NA75 NGA75 LA50 LGA50 LA75 LGA75 +Canu 10 10 10 5 2 2 189520 189520 189520 145564 105666 105666 10 55538 189520 229880 43.81 44.99 50128 14962 10429 8915 2 3 5 8 6 4 130535 0 0 0 1 + 0 part 6943 68.321 1.162 0.00 152.81 965.90 32674 182565 22858 14507 8944 4648 4 5 8 12 diff --git a/assembly_stats/miniasm.tsv b/assembly_stats/miniasm.tsv index 2103d1a..37373ea 100644 --- a/assembly_stats/miniasm.tsv +++ b/assembly_stats/miniasm.tsv @@ -1,2 +1,2 @@ -Assembly # contigs (>= 0 bp) # contigs (>= 1000 bp) # contigs (>= 5000 bp) # contigs (>= 10000 bp) # contigs (>= 25000 bp) # contigs (>= 50000 bp) Total length (>= 0 bp) Total length (>= 1000 bp) Total length (>= 5000 bp) Total length (>= 10000 bp) Total length (>= 25000 bp) Total length (>= 50000 bp) # contigs Largest contig Total length Estimated reference length GC (%) N50 NG50 N75 NG75 L50 LG50 L75 LG75 # N's per 100 kbp -Miniasm 7 7 7 5 3 1 192885 192885 192885 178413 139255 74073 7 74073 192885 229883 44.86 34878 30304 23341 15817 2 3 4 5 0.00 +Assembly # contigs (>= 0 bp) # contigs (>= 1000 bp) # contigs (>= 5000 bp) # contigs (>= 10000 bp) # contigs (>= 25000 bp) # contigs (>= 50000 bp) Total length (>= 0 bp) Total length (>= 1000 bp) Total length (>= 5000 bp) Total length (>= 10000 bp) Total length (>= 25000 bp) Total length (>= 50000 bp) # contigs Largest contig Total length Reference length GC (%) Reference GC (%) N50 NG50 N75 NG75 L50 LG50 L75 LG75 # unaligned contigs Unaligned length # N's per 100 kbp NGA50 +Miniasm 7 7 7 5 3 1 192885 192885 192885 178413 139255 74073 7 74073 192885 229880 44.86 44.99 34878 30304 23341 15817 2 3 4 5 7 + 0 part 192885 0.00 -