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update basic dependencies and pre-commit-config
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.pre-commit-config.yaml

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repos:
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- repo: https://github.com/psf/black
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rev: 22.6.0
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rev: 25.9.0
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hooks:
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- id: black
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- repo: https://github.com/PyCQA/flake8
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rev: 5.0.4
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rev: 7.3.0
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hooks:
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- id: flake8
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- repo: https://github.com/PyCQA/isort
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rev: 5.10.1
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rev: 6.0.0
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hooks:
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- id: isort

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