Merge pull request #57 from hanslovsky/remove-imagej-common-dependency

Remove imagej-common dependency

Author: hanslovsky

pom.xml

@@ -227,12 +227,6 @@ Jean-Yves Tinevez and Michael Zinsmaier.</license.copyrightOwners>
 			<artifactId>imglib2-realtransform</artifactId>
 		</dependency>
 
-		<!-- ImageJ dependencies -->
-		<dependency>
-			<groupId>net.imagej</groupId>
-			<artifactId>imagej-common</artifactId>
-		</dependency>
-
 		<!-- Third-party dependencies -->
 		<dependency>
 			<groupId>gov.nist.math</groupId>

src/main/java/net/imglib2/algorithm/dog/DogDetection.java

@@ -37,7 +37,6 @@
 import java.util.concurrent.ExecutorService;
 import java.util.concurrent.Executors;
 
-import net.imagej.space.LinearSpace;
 import net.imglib2.Interval;
 import net.imglib2.Point;
 import net.imglib2.RandomAccessible;
@@ -78,16 +77,6 @@ public static enum ExtremaType
 	 **/
 	private ExecutorService executorService;
 
-	public < I extends RandomAccessibleInterval< T > & LinearSpace< ? > > DogDetection(
-			final I input,
-			final double sigmaSmaller,
-			final double sigmaLarger,
-			final ExtremaType extremaType,
-			final double minPeakValue )
-	{
-		this( Views.extendMirrorSingle( input ), input, getcalib( input ), sigmaSmaller, sigmaLarger, extremaType, minPeakValue, true );
-	}
-
 	public DogDetection(
 			final RandomAccessibleInterval< T > input,
 			final double[] calibration,
@@ -97,7 +86,7 @@ public DogDetection(
 			final double minPeakValue,
 			final boolean normalizeMinPeakValue )
 	{
-		this( Views.extendMirrorSingle( input ), input, calibration, sigmaSmaller, sigmaLarger, extremaType, minPeakValue, true );
+		this( Views.extendMirrorSingle( input ), input, calibration, sigmaSmaller, sigmaLarger, extremaType, minPeakValue, normalizeMinPeakValue );
 	}
 
 	/**
@@ -314,14 +303,6 @@ public void setExecutorService( final ExecutorService service )
 		this.executorService = service;
 	}
 
-	private static double[] getcalib( final LinearSpace< ? > calib )
-	{
-		final double[] c = new double[ calib.numDimensions() ];
-		for ( int d = 0; d < c.length; ++d )
-			c[ d ] = calib.axis( d ).scale();
-		return c;
-	}
-
 	private static class DogComputationType< F extends RealType< F > & NativeType< F > >
 	{
 		private final F type;