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gselzergselzer
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De-opify some algorithms
These are TBD and are not currently used by anyone, so we can re-opify them later!
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4 files changed

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‎src/main/java/net/imglib2/algorithm/edge/SubpixelEdgelDetection.java‎

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@@ -74,7 +74,7 @@ public class SubpixelEdgelDetection
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* Note: The input image type must be a signed type! Otherwise gradient
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* computation will not work.
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*
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* @implNote op name='image.subpixelEdgels', type=Function
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* @implNote op name='features.subpixelEdgels', type=Function
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* @param input
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* input image
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* @param factory

‎src/main/java/net/imglib2/algorithm/hough/HoughTransforms.java‎

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@@ -106,7 +106,6 @@ private static int defaultRho( final Dimensions dimensions )
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* Returns the size of the vote space output image given an input
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* {@link RandomAccessibleInterval}.
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*
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* @implNote op names='features.hough.getVotespaceSize', type=Function
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* @param dimensions
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* - the {@link Dimensions} over which the Hough Line Transform
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* will be run
@@ -121,7 +120,6 @@ public static long[] getVotespaceSize( final Dimensions dimensions )
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* Returns the size of the vote space output image given an input
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* {@link RandomAccessibleInterval}.
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*
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* @implNote op names='features.hough.getVotespaceSize', type=Function
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* @param dimensions
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* - the {@link Dimensions} over which the Hough Line Transform
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* will be run
@@ -138,7 +136,6 @@ public static long[] getVotespaceSize( final Dimensions dimensions, final int nT
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* Returns the size of the voteSpace output image given desired {@code nRho}
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* and {@code nTheta} values.
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*
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* @implNote op names='features.hough.getVotespaceSize', type=Function
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* @param nRho
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* - the number of bins for rho resolution
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* @param nTheta
@@ -153,7 +150,6 @@ public static long[] getVotespaceSize( final int nRho, final int nTheta )
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/**
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* Pick vote space peaks with a {@link LocalExtrema}.
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*
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* @implNote op names='features.hough.pickPeaks', type=Function
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* @param voteSpace
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* - the {@link RandomAccessibleInterval} containing the output
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* of a Hough Transform vote
@@ -175,7 +171,6 @@ public static < T extends IntegerType< T > > List< Point > pickLinePeaks(
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/**
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* Pick vote space peaks with a {@link LocalExtrema}.
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*
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* @implNote op names='features.hough.pickPeaks', type=Function
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* @param voteSpace
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* - the {@link RandomAccessibleInterval} containing the output
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* of a Hough Transform vote
@@ -207,8 +202,6 @@ public static < T extends Comparable< T > > List< Point > pickLinePeaks(
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* Runs a Hough Line Tranform on an image and populates the vote space
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* parameter with the results.
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*
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* @implNote op names='features.hough.voteLines',
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* type=Computer
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* @param input
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* - the {@link RandomAccessibleInterval} to run the Hough Line
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* Transform over
@@ -235,7 +228,6 @@ public static < T extends Comparable< T >, U extends IntegerType< U > > void vot
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* are stored
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* @param nTheta
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* - the number of bins for theta resolution
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* @implNote op name='features.hough.voteLines', type=Computer2
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*/
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public static < T extends Comparable< T >, U extends IntegerType< U > > void voteLines(
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final RandomAccessibleInterval< T > input,
@@ -280,7 +272,6 @@ private static <T> T getTypeFromInterval( RandomAccessibleInterval< T > rai )
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* - the number of bins for theta resolution
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* @param nRho
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* - the number of bins for rho resolution
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* @implNote op names='features.hough.voteLines', type=Computer2
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*/
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public static < T extends Comparable< T >, U extends IntegerType< U > > void voteLines(
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final RandomAccessibleInterval< T > input,
@@ -308,7 +299,6 @@ public static < T extends Comparable< T >, U extends IntegerType< U > > void vot
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* @param threshold
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* - the minimum value allowed by the populator. Any input less
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* than this value will be disregarded by the populator.
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* @implNote op name='features.hough.voteLines', type=Computer2
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*/
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public static < T extends Comparable< T >, U extends IntegerType< U > > void voteLines(
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final RandomAccessibleInterval< T > input,
@@ -376,7 +366,6 @@ public static < T extends Comparable< T >, U extends IntegerType< U > > void vot
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* above the minimum value allowed by the populator. Any input
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* less than or equal to this value will be disregarded by the
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* populator.
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* @implNote op name='features.hough.voteLines', type=Computer2
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*/
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public static < T, U extends IntegerType< U > > void voteLines(
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final RandomAccessibleInterval< T > input,
@@ -442,7 +431,6 @@ public static < T, U extends IntegerType< U > > void voteLines(
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* y-intercept value. Used with {@link HoughTransforms#getSlope} to create
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* line equations.
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*
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* @implNote op name='features.hough.intercept', type=Function
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* @param rho
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* - the {@code rho} of the line
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* @param theta
@@ -461,7 +449,6 @@ public static double getIntercept( final long rho, final long theta )
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* value. Used with {@link HoughTransforms#getIntercept} to create line
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* equations.
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*
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* @implNote op name='features.hough.slope', type=Function
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* @param theta
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* - the {@code theta} of the line
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* @return {@code double} - the y-intercept of the line

‎src/main/java/net/imglib2/algorithm/util/Grids.java‎

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@@ -213,7 +213,6 @@ public static void forEachOffset(
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* Get all blocks of size {@code blockSize} contained within an interval
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* specified by {@code dimensions} and their positions within a cell grid.
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*
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* @implNote op name='grid.partition', type=Function
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* @param dimensions
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* @param blockSize
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* @return list of blocks as specified by {@link Interval} and the position
@@ -230,7 +229,6 @@ public static List< Pair< Interval, long[] > > collectAllContainedIntervalsWithG
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* specified by {@code min}, {@code max} and their positions within a cell
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* grid.
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*
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* @implNote op name='grid.partition', type=Function
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* @param min
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* @param max
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* @param blockSize
@@ -247,7 +245,6 @@ public static List< Pair< Interval, long[] > > collectAllContainedIntervalsWithG
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* Get all blocks of size {@code blockSize} contained within an interval
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* specified by {@code dimensions} and their positions within a cell grid.
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*
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* @implNote op name='grid.partition', type=Function
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* @param dimensions
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* @param blockSize
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* @return list of blocks as specified by {@link Interval}
@@ -263,7 +260,6 @@ public static List< Interval > collectAllContainedIntervals( final long[] dimens
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* specified by {@code min}, {@code max} and their positions within a cell
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* grid.
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*
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* @implNote op name='grid.partition', type=Function
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* @param min
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* @param max
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* @param blockSize
@@ -279,7 +275,6 @@ public static List< Interval > collectAllContainedIntervals( final long[] min, f
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* Get all blocks of size {@code blockSize} contained within an interval
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* specified by {@code dimensions}.
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*
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* @implNote op name='grid.partition', type=Function
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* @param dimensions
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* @param blockSize
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* @return list of blocks defined by minimum
@@ -294,7 +289,6 @@ public static List< long[] > collectAllOffsets( final long[] dimensions, final i
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* Get all blocks of size {@code blockSize} contained within an interval
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* specified by {@code dimensions}.
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*
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* @implNote op name='grid.partition', type=Function
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* @param dimensions
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* @param blockSize
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* @param func
@@ -312,7 +306,6 @@ public static < T > List< T > collectAllOffsets( final long[] dimensions, final
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* Get all blocks of size {@code blockSize} contained within an interval
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* specified by {@code min} and {@code max}.
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*
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* @implNote op name='grid.partition', type=Function
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* @param min
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* @param max
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* @param blockSize
@@ -328,7 +321,6 @@ public static List< long[] > collectAllOffsets( final long[] min, final long[] m
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* Get all blocks of size {@code blockSize} contained within an interval
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* specified by {@code min} and {@code max}.
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*
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* @implNote op name='grid.partition', type=Function
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* @param min
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* @param max
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* @param blockSize
@@ -474,7 +466,6 @@ public static Function< long[], Pair< Interval, long[] > > croppedIntervalAndGri
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* into a {@link Pair} of {@link Interval} and {@link long[]} that specify
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* the block and its position in grid coordinates.
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*
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* @implNote op name='grid.partition', type=Function
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* @param min
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* minimum of the grid
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* @param max

‎src/main/java/net/imglib2/algorithm/util/ParallelizeOverBlocks.java‎

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Original file line numberDiff line numberDiff line change
@@ -61,7 +61,6 @@ public class ParallelizeOverBlocks
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*
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* Submit blocked tasks and wait for execution.
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*
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* @implNote op name='grid.parallelize', type=Function
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* @param func
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* {@link Function} to be applied to each block as specified by
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* first parameter {@link Interval}.
@@ -89,7 +88,6 @@ public static < T > List< T > parallelizeAndWait(
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*
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* Submit blocked tasks and wait for execution.
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*
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* @implNote op name='grid.parallelizeAsync', type=Function
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* @param func
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* {@link Function} to be applied to each block as specified by
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* first parameter {@link Interval}.
@@ -114,7 +112,6 @@ public static < T > List< Future< List< T > > > parallelize(
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*
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* Submit blocked tasks and wait for execution.
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*
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* @implNote op name='grid.parallelize', type=Function
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* @param func
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* {@link Function} to be applied to each block as specified by
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* first parameter {@link Interval}.
@@ -148,7 +145,6 @@ public static < T > List< T > parallelizeAndWait(
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*
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* Submit blocked tasks and wait for execution.
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*
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* @implNote op name='grid.parallelizeAsync', type=Function
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* @param func
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* {@link Function} to be applied to each block as specified by
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* first parameter {@link Interval}.
@@ -181,7 +177,6 @@ public static < T > List< Future< List< T > > > parallelize(
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*
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* Submit blocked tasks and wait for execution.
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*
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* @implNote op name='grid.parallelize', type=Function
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* @param func
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* {@link Function} to be applied to each block as specified by
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* first parameter {@link Interval}.
@@ -211,7 +206,6 @@ public static < T > List< T > parallelizeAndWait(
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*
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* Submit blocked tasks and wait for execution.
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*
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* @implNote op name='grid.parallelizeAsync', type=Function
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* @param func
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* {@link Function} to be applied to each block as specified by
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* first parameter {@link Interval}.

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