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Missing hydrogen bound to triple-bonded carbon parameters? #8

@mattwthompson

Description

@mattwthompson

I'm not finding triple bond parameters ... am I doing something wrong in my setup here? yes I was, misreading the SMIRKS completely!

I'm using this file, manually downloaded instead of provided via the package, but the parameters in each file should be the same. I don't see why this parameter isn't getting assigned in the case of a triple bonded carbon hydrogen bound to a triple-bonded carbon.

In [1]: from openff.toolkit import ForceField, Molecule

In [2]: [
   ...:     *ForceField(
   ...:         "openff-2.1.0.offxml",
   ...:         load_plugins=True,
   ...:     )
   ...:     .label_molecules(Molecule.from_smiles("C#C").to_topology())[0]["vdW"]
   ...:     .values()
   ...: ]  # 4 atoms, so expect 4 parameters
/Users/mattthompson/micromamba/envs/openff-interchange-dev/lib/python3.11/site-packages/smirnoff99frosst/smirnoff99frosst.py:11: UserWarning: Module openff was already imported from None, but /Users/mattthompson/software/openff-interchange is being added to sys.path
  from pkg_resources import resource_filename
Out[2]:
[<vdWType with smirks: [#6X2:1]  epsilon: 0.21 kilocalorie / mole  id: n15  rmin_half: 1.908 angstrom  >,
 <vdWType with smirks: [#6X2:1]  epsilon: 0.21 kilocalorie / mole  id: n15  rmin_half: 1.908 angstrom  >,
 <vdWType with smirks: [#1:1]-[#6X2]  epsilon: 0.015 kilocalorie / mole  id: n10  rmin_half: 1.459 angstrom  >,
 <vdWType with smirks: [#1:1]-[#6X2]  epsilon: 0.015 kilocalorie / mole  id: n10  rmin_half: 1.459 angstrom  >]

In [3]: [
   ...:     *ForceField(
   ...:         "de-force-1.0.1.offxml",
   ...:         load_plugins=True,
   ...:     )
   ...:     .label_molecules(Molecule.from_smiles("C#C").to_topology())[0]["DoubleExponential"]
   ...:     .values()
   ...: ]  # only 2 parameters?
Out[3]:
[<DoubleExponentialType with smirks: [#6:1]  r_min: 3.92573627772 angstrom  epsilon: 0.09288982710453 kilocalorie / mole  >,
 <DoubleExponentialType with smirks: [#6:1]  r_min: 3.92573627772 angstrom  epsilon: 0.09288982710453 kilocalorie / mole  >]

In [4]: [
   ...:     *ForceField(
   ...:         "de-force-1.0.1.offxml",
   ...:         load_plugins=True,
   ...:     )
   ...:     .label_molecules(Molecule.from_smiles("C=C").to_topology())[0]["DoubleExponential"]
   ...:     .values()
   ...: ]  # but this gives the expected 6
Out[4]:
[<DoubleExponentialType with smirks: [#6:1]  r_min: 3.92573627772 angstrom  epsilon: 0.09288982710453 kilocalorie / mole  >,
 <DoubleExponentialType with smirks: [#6:1]  r_min: 3.92573627772 angstrom  epsilon: 0.09288982710453 kilocalorie / mole  >,
 <DoubleExponentialType with smirks: [#1:1]-[#6X3]  r_min: 2.780924935117 angstrom  epsilon: 0.01933806046098 kilocalorie / mole  >,
 <DoubleExponentialType with smirks: [#1:1]-[#6X3]  r_min: 2.780924935117 angstrom  epsilon: 0.01933806046098 kilocalorie / mole  >,
 <DoubleExponentialType with smirks: [#1:1]-[#6X3]  r_min: 2.780924935117 angstrom  epsilon: 0.01933806046098 kilocalorie / mole  >,
 <DoubleExponentialType with smirks: [#1:1]-[#6X3]  r_min: 2.780924935117 angstrom  epsilon: 0.01933806046098 kilocalorie / mole  >]

In [5]: [
   ...:     parameter.smirks
   ...:     for parameter in ForceField("de-force-1.0.1.offxml", load_plugins=True)[
   ...:         "DoubleExponential"
   ...:     ].parameters
   ...: ]
Out[5]:
['[#1:1]-[#6X4]',
 '[#1:1]-[#6X4]-[#7,#8,#9,#16,#17,#35]',
 '[#1:1]-[#6X3]',
 '[#1:1]-[#6X3]~[#7,#8,#9,#16,#17,#35]',
 '[#1:1]-[#6X3](~[#7,#8,#9,#16,#17,#35])~[#7,#8,#9,#16,#17,#35]',
 '[#1:1]-[#7]',
 '[#1:1]-[#8]',
 '[#6:1]',  # <-- the parameter exists in memory just fine
 '[#6X4:1]',
 '[#8:1]',
 '[#8X2H0+0:1]',
 '[#8X2H1+0:1]',
 '[#7:1]',
 '[#17:1]',
 '[#35:1]',
 '[#1]-[#8X2H2+0:1]-[#1]',
 '[#1:1]-[#8X2H2+0]-[#1]']
Click for output of `micromamba list`
List of packages in environment: "/Users/mattthompson/micromamba/envs/openff-interchange-dev"

Name                           Version       Build                       Channel    
────────────────────────────────────────────────────────────────────────────────────────
ambertools                     23.3          py311hb11241e_6             conda-forge
annotated-types                0.6.0         pyhd8ed1ab_0                conda-forge
anyio                          4.1.0         pyhd8ed1ab_0                conda-forge
appnope                        0.1.3         pyhd8ed1ab_0                conda-forge
argon2-cffi                    23.1.0        pyhd8ed1ab_0                conda-forge
argon2-cffi-bindings           21.2.0        py311h2725bcf_4             conda-forge
arpack                         3.8.0         nompi_hb44a6d1_101          conda-forge
arrow                          1.3.0         pyhd8ed1ab_0                conda-forge
asttokens                      2.4.1         pyhd8ed1ab_0                conda-forge
astunparse                     1.6.3         pyhd8ed1ab_0                conda-forge
async-lru                      2.0.4         pyhd8ed1ab_0                conda-forge
attrs                          23.1.0        pyh71513ae_1                conda-forge
babel                          2.14.0        pyhd8ed1ab_0                conda-forge
beautifulsoup4                 4.12.2        pyha770c72_0                conda-forge
biopython                      1.81          py311he705e18_1             conda-forge
black                          23.12.1       py311h6eed73b_0             conda-forge
bleach                         6.1.0         pyhd8ed1ab_0                conda-forge
blosc                          1.21.5        heccf04b_0                  conda-forge
brotli                         1.1.0         h0dc2134_1                  conda-forge
brotli-bin                     1.1.0         h0dc2134_1                  conda-forge
brotli-python                  1.1.0         py311hdf8f085_1             conda-forge
bson                           0.5.9         py_0                        conda-forge
bzip2                          1.0.8         h10d778d_5                  conda-forge
c-ares                         1.23.0        h10d778d_0                  conda-forge
c-blosc2                       2.11.3        h354e526_0                  conda-forge
ca-certificates                2023.11.17    h8857fd0_0                  conda-forge
cached-property                1.5.2         hd8ed1ab_1                  conda-forge
cached_property                1.5.2         pyha770c72_1                conda-forge
cachetools                     5.3.2         pyhd8ed1ab_0                conda-forge
cctools_osx-64                 973.0.1       hcc6d90d_13                 conda-forge
certifi                        2023.11.17    pyhd8ed1ab_0                conda-forge
cffi                           1.16.0        py311hc0b63fd_0             conda-forge
cfgv                           3.3.1         pyhd8ed1ab_0                conda-forge
cftime                         1.6.3         py311hc9a392d_0             conda-forge
charset-normalizer             3.3.2         pyhd8ed1ab_0                conda-forge
clang                          14.0.6        h694c41f_1                  conda-forge
clang-14                       14.0.6        default_hdb78580_1          conda-forge
clang_osx-64                   14.0.6        h3113cd8_6                  conda-forge
clangxx                        14.0.6        default_hdb78580_1          conda-forge
clangxx_osx-64                 14.0.6        h6f97653_6                  conda-forge
click                          8.1.7         unix_pyh707e725_0           conda-forge
cmake                          3.28.1        h7c85d92_0                  conda-forge
colorama                       0.4.6         pyhd8ed1ab_0                conda-forge
comm                           0.1.4         pyhd8ed1ab_0                conda-forge
compiler-rt                    14.0.6        h613da45_0                  conda-forge
compiler-rt_osx-64             14.0.6        hab78ec2_0                  conda-forge
contourpy                      1.2.0         py311h7bea37d_0             conda-forge
coverage                       7.3.3         py311he705e18_0             conda-forge
cycler                         0.12.1        pyhd8ed1ab_0                conda-forge
debugpy                        1.8.0         py311hdf8f085_1             conda-forge
decorator                      5.1.1         pyhd8ed1ab_0                conda-forge
defusedxml                     0.7.1         pyhd8ed1ab_0                conda-forge
distlib                        0.3.8         pyhd8ed1ab_0                conda-forge
entrypoints                    0.4           pyhd8ed1ab_0                conda-forge
exceptiongroup                 1.2.0         pyhd8ed1ab_0                conda-forge
execnet                        2.0.2         pyhd8ed1ab_0                conda-forge
executing                      2.0.1         pyhd8ed1ab_0                conda-forge
fasteners                      0.17.3        pyhd8ed1ab_0                conda-forge
fftw                           3.3.10        nompi_h4fa670e_108          conda-forge
filelock                       3.13.1        pyhd8ed1ab_0                conda-forge
flake8                         7.0.0         pyhd8ed1ab_0                conda-forge
fonttools                      4.46.0        py311he705e18_0             conda-forge
fqdn                           1.5.1         pyhd8ed1ab_0                conda-forge
freetype                       2.12.1        h60636b9_2                  conda-forge
gawk                           5.3.0         h2c496e9_0                  conda-forge
gettext                        0.21.1        h8a4c099_0                  conda-forge
gfortran_impl_osx-64           11.4.0        h2a33dde_1                  conda-forge
gfortran_osx-64                11.4.0        h18f7dce_1                  conda-forge
gmp                            6.3.0         h93d8f39_0                  conda-forge
griddataformats                1.0.2         pyhd8ed1ab_0                conda-forge
gromacs                        2023.3        nompi_he8275da_103          conda-forge
gsd                            3.2.0         py311h4a70a88_0             conda-forge
gsl                            2.7           h93259b0_0                  conda-forge
h5py                           3.10.0        nompi_py311hf7b785c_101     conda-forge
hdf4                           4.2.15        h8138101_7                  conda-forge
hdf5                           1.14.3        nompi_h691f4bf_100          conda-forge
icu                            73.2          hf5e326d_0                  conda-forge
identify                       2.5.33        pyhd8ed1ab_0                conda-forge
idna                           3.6           pyhd8ed1ab_0                conda-forge
importlib-metadata             7.0.0         pyha770c72_0                conda-forge
importlib_metadata             7.0.0         hd8ed1ab_0                  conda-forge
importlib_resources            6.1.1         pyhd8ed1ab_0                conda-forge
iniconfig                      2.0.0         pyhd8ed1ab_0                conda-forge
intermol                       0.1.2         pyhd8ed1ab_0                conda-forge
ipdb                           0.13.13       pyhd8ed1ab_0                conda-forge
ipykernel                      6.26.0        pyh3cd1d5f_0                conda-forge
ipython                        8.18.1        pyh707e725_3                conda-forge
ipywidgets                     8.1.1         pyhd8ed1ab_0                conda-forge
isl                            0.25          hb486fe8_0                  conda-forge
isoduration                    20.11.0       pyhd8ed1ab_0                conda-forge
isort                          5.13.2        pyhd8ed1ab_0                conda-forge
jedi                           0.19.1        pyhd8ed1ab_0                conda-forge
jinja2                         3.1.2         pyhd8ed1ab_1                conda-forge
joblib                         1.3.2         pyhd8ed1ab_0                conda-forge
json5                          0.9.14        pyhd8ed1ab_0                conda-forge
jsonpointer                    2.4           py311h6eed73b_3             conda-forge
jsonschema                     4.20.0        pyhd8ed1ab_0                conda-forge
jsonschema-specifications      2023.11.2     pyhd8ed1ab_0                conda-forge
jsonschema-with-format-nongpl  4.20.0        pyhd8ed1ab_0                conda-forge
jupyter-lsp                    2.2.1         pyhd8ed1ab_0                conda-forge
jupyter_client                 8.6.0         pyhd8ed1ab_0                conda-forge
jupyter_core                   5.5.0         py311h6eed73b_0             conda-forge
jupyter_events                 0.9.0         pyhd8ed1ab_0                conda-forge
jupyter_server                 2.12.1        pyhd8ed1ab_0                conda-forge
jupyter_server_terminals       0.5.0         pyhd8ed1ab_0                conda-forge
jupyterlab                     4.0.10        pyhd8ed1ab_0                conda-forge
jupyterlab_pygments            0.3.0         pyhd8ed1ab_0                conda-forge
jupyterlab_server              2.25.2        pyhd8ed1ab_0                conda-forge
jupyterlab_widgets             3.0.9         pyhd8ed1ab_0                conda-forge
khronos-opencl-icd-loader      2023.04.17    hb7f2c08_0                  conda-forge
kim-api                        2.3.0         he814149_1                  conda-forge
kiwisolver                     1.4.5         py311h5fe6e05_1             conda-forge
krb5                           1.21.2        hb884880_0                  conda-forge
lammps                         2023.08.02    cpu_py311_h7e0894f_nompi_8  conda-forge
lcms2                          2.16          ha2f27b4_0                  conda-forge
ld64_osx-64                    609           hfd63004_13                 conda-forge
lerc                           4.0.0         hb486fe8_0                  conda-forge
libaec                         1.1.2         he965462_1                  conda-forge
libblas                        3.9.0         20_osx64_openblas           conda-forge
libboost                       1.82.0        hf0c313a_6                  conda-forge
libbrotlicommon                1.1.0         h0dc2134_1                  conda-forge
libbrotlidec                   1.1.0         h0dc2134_1                  conda-forge
libbrotlienc                   1.1.0         h0dc2134_1                  conda-forge
libcblas                       3.9.0         20_osx64_openblas           conda-forge
libclang-cpp14                 14.0.6        default_hdb78580_1          conda-forge
libcurl                        8.5.0         h726d00d_0                  conda-forge
libcxx                         16.0.6        hd57cbcb_0                  conda-forge
libdeflate                     1.19          ha4e1b8e_0                  conda-forge
libedit                        3.1.20191231  hed1e85f_2                  conda-forge
libev                          4.33          h10d778d_2                  conda-forge
libexpat                       2.5.0         hf0c8a7f_1                  conda-forge
libffi                         3.4.2         h0d85af4_5                  conda-forge
libgfortran                    5.0.0         13_2_0_h97931a8_1           conda-forge
libgfortran-devel_osx-64       11.4.0        h01aa347_1                  conda-forge
libgfortran5                   13.2.0        h2873a65_1                  conda-forge
libhwloc                       2.9.3         default_h961836e_1009       conda-forge
libiconv                       1.17          hd75f5a5_1                  conda-forge
libidn2                        2.3.4         hb7f2c08_0                  conda-forge
libjpeg-turbo                  3.0.0         h0dc2134_1                  conda-forge
liblapack                      3.9.0         20_osx64_openblas           conda-forge
libllvm14                      14.0.6        hc8e404f_4                  conda-forge
libnetcdf                      4.9.2         nompi_h7760872_113          conda-forge
libnghttp2                     1.58.0        h64cf6d3_1                  conda-forge
libopenblas                    0.3.25        openmp_hfef2a42_0           conda-forge
libpng                         1.6.39        ha978bb4_0                  conda-forge
libsodium                      1.0.18        hbcb3906_1                  conda-forge
libsqlite                      3.44.2        h92b6c6a_0                  conda-forge
libssh2                        1.11.0        hd019ec5_0                  conda-forge
libtiff                        4.6.0         h684deea_2                  conda-forge
libunistring                   0.9.10        h1de35cc_0                  conda-forge
libuv                          1.46.0        h0c2f820_0                  conda-forge
libwebp-base                   1.3.2         h0dc2134_0                  conda-forge
libxcb                         1.15          hb7f2c08_0                  conda-forge
libxml2                        2.12.3        hc0ae0f7_0                  conda-forge
libzip                         1.10.1        hc158999_3                  conda-forge
libzlib                        1.2.13        h8a1eda9_5                  conda-forge
llvm-openmp                    17.0.6        hb6ac08f_0                  conda-forge
llvm-tools                     14.0.6        hc8e404f_4                  conda-forge
lz4-c                          1.9.4         hf0c8a7f_0                  conda-forge
make                           4.3           h22f3db7_1                  conda-forge
markupsafe                     2.1.3         py311h2725bcf_1             conda-forge
matplotlib-base                3.8.2         py311hd316c10_0             conda-forge
matplotlib-inline              0.1.6         pyhd8ed1ab_0                conda-forge
mccabe                         0.7.0         pyhd8ed1ab_0                conda-forge
mda-xdrlib                     0.2.0         pyhd8ed1ab_0                conda-forge
mdanalysis                     2.7.0         py311hab14417_1             conda-forge
mdtraj                         1.9.9         py311h8f92aaa_0             conda-forge
micromamba                     1.5.6         0                           conda-forge
mistune                        3.0.2         pyhd8ed1ab_0                conda-forge
mmtf-python                    1.1.3         pyhd8ed1ab_0                conda-forge
mpc                            1.3.1         h81bd1dd_0                  conda-forge
mpfr                           4.2.1         h0c69b56_0                  conda-forge
mpi                            1.0           mpich                       conda-forge
mpich                          4.1.2         hd33e60e_100                conda-forge
mrcfile                        1.4.3         pyhd8ed1ab_0                conda-forge
msgpack-python                 1.0.7         py311h7bea37d_0             conda-forge
munkres                        1.1.4         pyh9f0ad1d_0                conda-forge
mypy                           1.3.0         py311h2725bcf_0             conda-forge
mypy_extensions                1.0.0         pyha770c72_0                conda-forge
nbclient                       0.8.0         pyhd8ed1ab_0                conda-forge
nbconvert-core                 7.12.0        pyhd8ed1ab_0                conda-forge
nbformat                       5.9.2         pyhd8ed1ab_0                conda-forge
nbval                          0.10.0        pyhd8ed1ab_0                conda-forge
ncurses                        6.4           h93d8f39_2                  conda-forge
nest-asyncio                   1.5.8         pyhd8ed1ab_0                conda-forge
netcdf-fortran                 4.6.1         nompi_h383bc5a_103          conda-forge
netcdf4                        1.6.5         nompi_py311hd2be13f_100     conda-forge
networkx                       3.2.1         pyhd8ed1ab_0                conda-forge
nglview                        3.1.1         pyh15ce09e_0                conda-forge
nodeenv                        1.8.0         pyhd8ed1ab_0                conda-forge
notebook-shim                  0.2.3         pyhd8ed1ab_0                conda-forge
numexpr                        2.8.7         py311h1eadf79_4             conda-forge
numpy                          1.26.3        py311hc43a94b_0             conda-forge
ocl_icd_wrapper_apple          1.0.0         hbcb3906_0                  conda-forge
openeye-toolkits               2023.1.1      py311_0                     openeye    
openff-amber-ff-ports          0.0.4         pyhca7485f_0                conda-forge
openff-forcefields             2023.11.0     pyhca7485f_0                conda-forge
openff-interchange-base        0.3.18        pyhd8ed1ab_0                conda-forge
openff-models                  0.1.1         pyhca7485f_0                conda-forge
openff-toolkit-base            0.14.5        pyhd8ed1ab_1                conda-forge
openff-units                   0.2.1         pyh1a96a4e_0                conda-forge
openff-utilities               0.1.12        pyhd8ed1ab_0                conda-forge
openjpeg                       2.5.0         ha4da562_3                  conda-forge
openmm                         8.1.1         py311h2827df7_0_khronos     conda-forge
openssl                        3.2.0         hd75f5a5_1                  conda-forge
overrides                      7.4.0         pyhd8ed1ab_0                conda-forge
packaging                      23.2          pyhd8ed1ab_0                conda-forge
packmol                        20.010        h508aa58_0                  conda-forge
pandas                         2.1.4         py311h1eadf79_0             conda-forge
pandas-stubs                   2.1.4.231227  pyhd8ed1ab_0                conda-forge
pandocfilters                  1.5.0         pyhd8ed1ab_0                conda-forge
panedr                         0.8.0         pyhd8ed1ab_0                conda-forge
parmed                         4.2.2         py311hd39e593_1             conda-forge
parso                          0.8.3         pyhd8ed1ab_0                conda-forge
pathspec                       0.12.1        pyhd8ed1ab_0                conda-forge
patsy                          0.5.4         pyhd8ed1ab_0                conda-forge
pbr                            6.0.0         pyhd8ed1ab_0                conda-forge
perl                           5.32.1        7_h10d778d_perl5            conda-forge
pexpect                        4.8.0         pyh9f0ad1d_2                conda-forge
pickleshare                    0.7.5         py_1003                     conda-forge
pillow                         10.1.0        py311hea5c87a_0             conda-forge
pint                           0.21          pyhd8ed1ab_0                conda-forge
pip                            23.3.2        pyhd8ed1ab_0                conda-forge
pkg-config                     0.29.2        hb849cc2_1008               conda-forge
pkgutil-resolve-name           1.3.10        pyhd8ed1ab_1                conda-forge
platformdirs                   4.1.0         pyhd8ed1ab_0                conda-forge
pluggy                         1.3.0         pyhd8ed1ab_0                conda-forge
plumed                         2.8.2         nompi_h514ca54_100          conda-forge
pre-commit                     3.6.0         pyha770c72_0                conda-forge
prometheus_client              0.19.0        pyhd8ed1ab_0                conda-forge
prompt-toolkit                 3.0.42        pyha770c72_0                conda-forge
psutil                         5.9.5         py311h2725bcf_1             conda-forge
pthread-stubs                  0.4           hc929b4f_1001               conda-forge
ptyprocess                     0.7.0         pyhd3deb0d_0                conda-forge
pure_eval                      0.2.2         pyhd8ed1ab_0                conda-forge
py-cpuinfo                     9.0.0         pyhd8ed1ab_0                conda-forge
pycodestyle                    2.11.1        pyhd8ed1ab_0                conda-forge
pycparser                      2.21          pyhd8ed1ab_0                conda-forge
pydantic                       2.5.3         pyhd8ed1ab_0                conda-forge
pydantic-core                  2.14.6        py311h5e0f0e4_1             conda-forge
pyedr                          0.8.0         pyhd8ed1ab_0                conda-forge
pyflakes                       3.2.0         pyhd8ed1ab_0                conda-forge
pygments                       2.17.2        pyhd8ed1ab_0                conda-forge
pyobjc-core                    10.1          py311h9b70068_0             conda-forge
pyobjc-framework-cocoa         10.1          py311h9b70068_0             conda-forge
pyparsing                      3.1.1         pyhd8ed1ab_0                conda-forge
pysocks                        1.7.1         pyha2e5f31_6                conda-forge
pytables                       3.9.2         py311h3cee394_1             conda-forge
pytest                         7.4.4         pyhd8ed1ab_0                conda-forge
pytest-cov                     4.1.0         pyhd8ed1ab_0                conda-forge
pytest-randomly                3.15.0        pyhd8ed1ab_0                conda-forge
pytest-xdist                   3.5.0         pyhd8ed1ab_0                conda-forge
python                         3.11.7        h9f0c242_1_cpython          conda-forge
python-constraint              1.4.0         py_0                        conda-forge
python-dateutil                2.8.2         pyhd8ed1ab_0                conda-forge
python-fastjsonschema          2.19.0        pyhd8ed1ab_0                conda-forge
python-json-logger             2.0.7         pyhd8ed1ab_0                conda-forge
python-tzdata                  2023.3        pyhd8ed1ab_0                conda-forge
python_abi                     3.11          4_cp311                     conda-forge
pytng                          0.3.1         py311h0c3a6a7_0             conda-forge
pytz                           2023.3.post1  pyhd8ed1ab_0                conda-forge
pyyaml                         6.0.1         py311h2725bcf_1             conda-forge
pyzmq                          25.1.2        py311h889d6d6_0             conda-forge
readline                       8.2           h9e318b2_1                  conda-forge
referencing                    0.32.0        pyhd8ed1ab_0                conda-forge
requests                       2.31.0        pyhd8ed1ab_0                conda-forge
rfc3339-validator              0.1.4         pyhd8ed1ab_0                conda-forge
rfc3986-validator              0.1.1         pyh9f0ad1d_0                conda-forge
rhash                          1.4.4         h0dc2134_0                  conda-forge
rpds-py                        0.13.2        py311h5e0f0e4_0             conda-forge
scikit-learn                   1.3.2         py311h66081b9_2             conda-forge
scipy                          1.11.4        py311he0bea55_0             conda-forge
seaborn                        0.13.0        hd8ed1ab_0                  conda-forge
seaborn-base                   0.13.0        pyhd8ed1ab_0                conda-forge
send2trash                     1.8.2         pyhd1c38e8_0                conda-forge
setuptools                     68.2.2        pyhd8ed1ab_0                conda-forge
sigtool                        0.1.3         h88f4db0_0                  conda-forge
six                            1.16.0        pyh6c4a22f_0                conda-forge
smirnoff-plugins               2023.08.0     pyhd8ed1ab_0                conda-forge
smirnoff99frosst               1.1.0         pyh44b312d_0                conda-forge
snakeviz                       2.2.0         pyhd8ed1ab_0                conda-forge
snappy                         1.1.10        h225ccf5_0                  conda-forge
sniffio                        1.3.0         pyhd8ed1ab_0                conda-forge
soupsieve                      2.5           pyhd8ed1ab_1                conda-forge
stack_data                     0.6.2         pyhd8ed1ab_0                conda-forge
statsmodels                    0.14.1        py311hc9a392d_0             conda-forge
tapi                           1100.0.11     h879752b_0                  conda-forge
terminado                      0.18.0        pyh31c8845_0                conda-forge
threadpoolctl                  3.2.0         pyha21a80b_0                conda-forge
tidynamics                     1.1.2         pyhd8ed1ab_0                conda-forge
tinycss2                       1.2.1         pyhd8ed1ab_0                conda-forge
tk                             8.6.13        h1abcd95_1                  conda-forge
toml                           0.10.2        pyhd8ed1ab_0                conda-forge
tomli                          2.0.1         pyhd8ed1ab_0                conda-forge
tornado                        6.3.3         py311h2725bcf_1             conda-forge
tqdm                           4.66.1        pyhd8ed1ab_0                conda-forge
traitlets                      5.14.0        pyhd8ed1ab_0                conda-forge
tuna                           0.5.11        pyhd8ed1ab_0                conda-forge
types-docutils                 0.20.0.3      pyhd8ed1ab_0                conda-forge
types-python-dateutil          2.8.19.14     pyhd8ed1ab_0                conda-forge
types-pytz                     2023.3.1.1    pyhd8ed1ab_0                conda-forge
types-setuptools               69.0.0.0      pyhd8ed1ab_0                conda-forge
typing-extensions              4.9.0         hd8ed1ab_0                  conda-forge
typing_extensions              4.9.0         pyha770c72_0                conda-forge
typing_utils                   0.1.0         pyhd8ed1ab_0                conda-forge
tzdata                         2023c         h71feb2d_0                  conda-forge
ukkonen                        1.0.1         py311h5fe6e05_4             conda-forge
uri-template                   1.3.0         pyhd8ed1ab_0                conda-forge
urllib3                        2.1.0         pyhd8ed1ab_0                conda-forge
virtualenv                     20.25.0       pyhd8ed1ab_0                conda-forge
voro                           0.4.6         h940c156_0                  conda-forge
wcwidth                        0.2.12        pyhd8ed1ab_0                conda-forge
webcolors                      1.13          pyhd8ed1ab_0                conda-forge
webencodings                   0.5.1         pyhd8ed1ab_2                conda-forge
websocket-client               1.7.0         pyhd8ed1ab_0                conda-forge
wget                           1.20.3        hd3787cc_1                  conda-forge
wheel                          0.42.0        pyhd8ed1ab_0                conda-forge
widgetsnbextension             4.0.9         pyhd8ed1ab_0                conda-forge
xmltodict                      0.13.0        pyhd8ed1ab_0                conda-forge
xorg-kbproto                   1.0.7         h35c211d_1002               conda-forge
xorg-libice                    1.1.1         h0dc2134_0                  conda-forge
xorg-libsm                     1.2.4         h0dc2134_0                  conda-forge
xorg-libx11                    1.8.7         hbd0b022_0                  conda-forge
xorg-libxau                    1.0.11        h0dc2134_0                  conda-forge
xorg-libxdmcp                  1.1.3         h35c211d_0                  conda-forge
xorg-libxext                   1.3.4         hb7f2c08_2                  conda-forge
xorg-libxt                     1.3.0         h0dc2134_1                  conda-forge
xorg-xextproto                 7.3.0         hb7f2c08_1003               conda-forge
xorg-xproto                    7.0.31        h35c211d_1007               conda-forge
xz                             5.2.6         h775f41a_0                  conda-forge
yaml                           0.2.5         h0d85af4_2                  conda-forge
zeromq                         4.3.5         h93d8f39_0                  conda-forge
zipp                           3.17.0        pyhd8ed1ab_0                conda-forge
zlib                           1.2.13        h8a1eda9_5                  conda-forge
zlib-ng                        2.0.7         hb7f2c08_0                  conda-forge
zstd                           1.5.5         h829000d_0                  conda-forge

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