diff --git a/packages/cli-tools/src/commands/prune.ts b/packages/cli-tools/src/commands/prune.ts
new file mode 100644
index 000000000..6fd6bff44
--- /dev/null
+++ b/packages/cli-tools/src/commands/prune.ts
@@ -0,0 +1,51 @@
+import ora from 'ora';
+import {preparePrune as preparePruneServices} from '../services/prune.prepare.services';
+import {prune as pruneServices} from '../services/prune.services';
+import type {PruneFilesFn, PruneFileStorage, PruneParams, PruneResult} from '../types/prune';
+
+export const prune = async ({
+  params,
+  pruneFn
+}: {
+  params: PruneParams;
+  pruneFn: PruneFilesFn;
+}): Promise<PruneResult> => {
+  const prepareResult = await preparePrune(params);
+
+  if (prepareResult.result === 'skipped') {
+    return {result: 'skipped'};
+  }
+
+  const {files} = prepareResult;
+
+  await pruneServices({files, pruneFn});
+
+  return {result: 'pruned', files};
+};
+
+const preparePrune = async (
+  params: Omit<PruneParams, 'uploadFn'>
+): Promise<{result: 'skipped'} | {result: 'to-prune'; files: PruneFileStorage[]}> => {
+  const spinner = ora('Preparing deploy...').start();
+
+  try {
+    const {files: sourceFiles} = await preparePruneServices(params);
+
+    spinner.stop();
+
+    if (sourceFiles.length === 0) {
+      console.log('');
+      console.log('👍  No stale assets found. Satellite is already clean.');
+
+      return {result: 'skipped'};
+    }
+
+    return {
+      result: 'to-prune',
+      files: sourceFiles
+    };
+  } catch (err: unknown) {
+    spinner.stop();
+    throw err;
+  }
+};
diff --git a/packages/cli-tools/src/index.ts b/packages/cli-tools/src/index.ts
index c29a11a81..62031cbcd 100644
--- a/packages/cli-tools/src/index.ts
+++ b/packages/cli-tools/src/index.ts
@@ -1,12 +1,14 @@
 export * from './commands/build';
 export * from './commands/deploy';
 export * from './commands/generate';
+export * from './commands/prune';
 export * from './commands/publish';
 export * from './constants/deploy.constants';
 export {ListAssets} from './types/assets';
 export type * from './types/deploy';
 export type * from './types/pkg';
 export type * from './types/proposal';
+export type * from './types/prune';
 export type * from './types/publish';
 export * from './utils/args.utils';
 export * from './utils/cmd.utils';
diff --git a/packages/cli-tools/src/services/prune.prepare.services.ts b/packages/cli-tools/src/services/prune.prepare.services.ts
new file mode 100644
index 000000000..a40fa4f64
--- /dev/null
+++ b/packages/cli-tools/src/services/prune.prepare.services.ts
@@ -0,0 +1,43 @@
+import type {CliConfig} from '@junobuild/config';
+import type {Asset} from '@junobuild/storage';
+import {join} from 'node:path';
+import {DEPLOY_DEFAULT_IGNORE, DEPLOY_DEFAULT_SOURCE} from '../constants/deploy.constants';
+import type {ListAssets} from '../types/assets';
+import type {PreparePruneOptions, PruneFileStorage} from '../types/prune';
+import {listSourceFilesForPrune} from '../utils/prune.utils';
+
+export const preparePrune = async ({
+  config,
+  listAssets,
+  assertSourceDirExists
+}: {
+  config: CliConfig;
+  listAssets: ListAssets;
+} & PreparePruneOptions): Promise<{files: PruneFileStorage[]}> => {
+  const {source = DEPLOY_DEFAULT_SOURCE, ignore = DEPLOY_DEFAULT_IGNORE} = config;
+
+  const sourceAbsolutePath = join(process.cwd(), source);
+
+  assertSourceDirExists?.(sourceAbsolutePath);
+
+  // 1. Scan local build output
+  const localPaths = listSourceFilesForPrune({sourceAbsolutePath, ignore});
+
+  const stale = await filterFilesToPrune({localPaths, listAssets});
+
+  return {files: stale.map(({fullPath}) => ({fullPath}))};
+};
+
+const filterFilesToPrune = async ({
+  localPaths,
+  listAssets
+}: {
+  localPaths: Set<string>;
+  listAssets: ListAssets;
+}): Promise<Asset[]> => {
+  // 2. Fetch all live assets (paginated)
+  const existingAssets = await listAssets({});
+
+  // 3. Compute stale = live_assets − local_files
+  return existingAssets.filter(({fullPath}) => !localPaths.has(fullPath));
+};
diff --git a/packages/cli-tools/src/services/prune.services.ts b/packages/cli-tools/src/services/prune.services.ts
new file mode 100644
index 000000000..d7362a312
--- /dev/null
+++ b/packages/cli-tools/src/services/prune.services.ts
@@ -0,0 +1,20 @@
+import ora from 'ora';
+import type {PruneFilesFn, PruneFileStorage} from '../types/prune';
+
+export const prune = async ({
+  files,
+  pruneFn
+}: {
+  files: PruneFileStorage[];
+  pruneFn: PruneFilesFn;
+}) => {
+  const deleteSpinner = ora(`Deleting ${files.length} stale asset(s)...`).start();
+
+  try {
+    await pruneFn({files});
+  } finally {
+    deleteSpinner.stop();
+  }
+
+  console.log(`\n✔ Pruned ${files.length} stale asset(s).`);
+};
diff --git a/packages/cli-tools/src/types/prune.ts b/packages/cli-tools/src/types/prune.ts
new file mode 100644
index 000000000..18e65a8a4
--- /dev/null
+++ b/packages/cli-tools/src/types/prune.ts
@@ -0,0 +1,14 @@
+import type {AssetsParams, PrepareAssetsOptions} from './assets';
+import type {PrepareDeployOptions} from './deploy';
+
+export type PreparePruneOptions = PrepareAssetsOptions;
+
+export type PruneParams = PrepareDeployOptions & AssetsParams;
+
+export interface PruneFileStorage {
+  fullPath: string;
+}
+
+export type PruneFilesFn = (params: {files: PruneFileStorage[]}) => Promise<void>;
+
+export type PruneResult = {result: 'pruned'; files: PruneFileStorage[]} | {result: 'skipped'};
diff --git a/packages/cli-tools/src/utils/prune.utils.ts b/packages/cli-tools/src/utils/prune.utils.ts
new file mode 100644
index 000000000..f8d5100d8
--- /dev/null
+++ b/packages/cli-tools/src/utils/prune.utils.ts
@@ -0,0 +1,28 @@
+import type {SatelliteConfig} from '@junobuild/config';
+import {minimatch} from 'minimatch';
+import {fullPath} from './assets.utils';
+import {files} from './fs.utils';
+
+/**
+ * Scans the local source directory and returns a Set of fullPaths that are present.
+ * Throws if the directory cannot be read.
+ */
+export const listSourceFilesForPrune = ({
+  sourceAbsolutePath,
+  ignore
+}: {sourceAbsolutePath: string} & Required<Pick<SatelliteConfig, 'ignore'>>): Set<string> => {
+  const allFiles = files(sourceAbsolutePath);
+  const filteredFiles = allFiles.filter((file) => shouldBeIncluded({file, ignore}));
+  return new Set(filteredFiles.map((file) => fullPath({file, sourceAbsolutePath})));
+};
+
+/**
+ * Returns true if the file should be excluded based on the ignore patterns.
+ */
+const isIgnored = ({file, ignore}: {file: string; ignore: string[]}): boolean =>
+  ignore.some((pattern) => minimatch(file, pattern, {matchBase: true}));
+
+/**
+ * Returns true if the file should be included for deletion.
+ */
+const shouldBeIncluded = (params: {file: string; ignore: string[]}): boolean => !isIgnored(params);